`View the original notebook on nbviewer `__ Importing Jupyter Notebooks as Modules ====================================== It is a common problem that people want to import code from Jupyter Notebooks. This is made difficult by the fact that Notebooks are not plain Python files, and thus cannot be imported by the regular Python machinery. Fortunately, Python provides some fairly sophisticated `hooks `__ into the import machinery, so we can actually make Jupyter notebooks importable without much difficulty, and only using public APIs. .. code:: python import io, os, sys, types .. code:: python from IPython import get_ipython from IPython.nbformat import current from IPython.core.interactiveshell import InteractiveShell Import hooks typically take the form of two objects: 1. a Module **Loader**, which takes a module name (e.g. ``'IPython.display'``), and returns a Module 2. a Module **Finder**, which figures out whether a module might exist, and tells Python what **Loader** to use .. code:: python def find_notebook(fullname, path=None): """find a notebook, given its fully qualified name and an optional path This turns "foo.bar" into "foo/bar.ipynb" and tries turning "Foo_Bar" into "Foo Bar" if Foo_Bar does not exist. """ name = fullname.rsplit('.', 1)[-1] if not path: path = [''] for d in path: nb_path = os.path.join(d, name + ".ipynb") if os.path.isfile(nb_path): return nb_path # let import Notebook_Name find "Notebook Name.ipynb" nb_path = nb_path.replace("_", " ") if os.path.isfile(nb_path): return nb_path Notebook Loader --------------- Here we have our Notebook Loader. It's actually quite simple - once we figure out the filename of the module, all it does is: 1. load the notebook document into memory 2. create an empty Module 3. execute every cell in the Module namespace Since IPython cells can have extended syntax, the IPython transform is applied to turn each of these cells into their pure-Python counterparts before executing them. If all of your notebook cells are pure-Python, this step is unnecessary. .. code:: python class NotebookLoader(object): """Module Loader for Jupyter Notebooks""" def __init__(self, path=None): self.shell = InteractiveShell.instance() self.path = path def load_module(self, fullname): """import a notebook as a module""" path = find_notebook(fullname, self.path) print ("importing Jupyter notebook from %s" % path) # load the notebook object with io.open(path, 'r', encoding='utf-8') as f: nb = current.read(f, 'json') # create the module and add it to sys.modules # if name in sys.modules: # return sys.modules[name] mod = types.ModuleType(fullname) mod.__file__ = path mod.__loader__ = self mod.__dict__['get_ipython'] = get_ipython sys.modules[fullname] = mod # extra work to ensure that magics that would affect the user_ns # actually affect the notebook module's ns save_user_ns = self.shell.user_ns self.shell.user_ns = mod.__dict__ try: for cell in nb.worksheets[0].cells: if cell.cell_type == 'code' and cell.language == 'python': # transform the input to executable Python code = self.shell.input_transformer_manager.transform_cell(cell.input) # run the code in themodule exec(code, mod.__dict__) finally: self.shell.user_ns = save_user_ns return mod The Module Finder ----------------- The finder is a simple object that tells you whether a name can be imported, and returns the appropriate loader. All this one does is check, when you do: .. code:: python import mynotebook it checks whether ``mynotebook.ipynb`` exists. If a notebook is found, then it returns a NotebookLoader. Any extra logic is just for resolving paths within packages. .. code:: python class NotebookFinder(object): """Module finder that locates Jupyter Notebooks""" def __init__(self): self.loaders = {} def find_module(self, fullname, path=None): nb_path = find_notebook(fullname, path) if not nb_path: return key = path if path: # lists aren't hashable key = os.path.sep.join(path) if key not in self.loaders: self.loaders[key] = NotebookLoader(path) return self.loaders[key] Register the hook ----------------- Now we register the ``NotebookFinder`` with ``sys.meta_path`` .. code:: python sys.meta_path.append(NotebookFinder()) After this point, my notebooks should be importable. Let's look at what we have in the CWD: .. code:: python ls nbpackage So I should be able to ``import nbimp.mynotebook``. Aside: displaying notebooks ~~~~~~~~~~~~~~~~~~~~~~~~~~~ Here is some simple code to display the contents of a notebook with syntax highlighting, etc. .. code:: python from pygments import highlight from pygments.lexers import PythonLexer from pygments.formatters import HtmlFormatter from IPython.display import display, HTML formatter = HtmlFormatter() lexer = PythonLexer() # publish the CSS for pygments highlighting display(HTML(""" """ % formatter.get_style_defs() )) .. code:: python def show_notebook(fname): """display a short summary of the cells of a notebook""" with io.open(fname, 'r', encoding='utf-8') as f: nb = current.read(f, 'json') html = [] for cell in nb.worksheets[0].cells: html.append("

%s cell

" % cell.cell_type) if cell.cell_type == 'code': html.append(highlight(cell.input, lexer, formatter)) else: html.append("
%s
" % cell.source) display(HTML('\n'.join(html))) show_notebook(os.path.join("nbpackage", "mynotebook.ipynb")) So my notebook has a heading cell and some code cells, one of which contains some IPython syntax. Let's see what happens when we import it .. code:: python from nbpackage import mynotebook Hooray, it imported! Does it work? .. code:: python mynotebook.foo() Hooray again! Even the function that contains IPython syntax works: .. code:: python mynotebook.has_ip_syntax() Notebooks in packages --------------------- We also have a notebook inside the ``nb`` package, so let's make sure that works as well. .. code:: python ls nbpackage/nbs Note that the ``__init__.py`` is necessary for ``nb`` to be considered a package, just like usual. .. code:: python show_notebook(os.path.join("nbpackage", "nbs", "other.ipynb")) .. code:: python from nbpackage.nbs import other other.bar(5) So now we have importable notebooks, from both the local directory and inside packages. I can even put a notebook inside IPython, to further demonstrate that this is working properly: .. code:: python import shutil from IPython.utils.path import get_ipython_package_dir utils = os.path.join(get_ipython_package_dir(), 'utils') shutil.copy(os.path.join("nbpackage", "mynotebook.ipynb"), os.path.join(utils, "inside_ipython.ipynb") ) and import the notebook from ``IPython.utils`` .. code:: python from IPython.utils import inside_ipython inside_ipython.whatsmyname() This approach can even import functions and classes that are defined in a notebook using the ``%%cython`` magic. `View the original notebook on nbviewer `__