One-Prompt-Medical-Image-Segmentation/Makefile

# Makefile for One-Prompt Medical Image Segmentation
# Common commands for development, testing, and training

.PHONY: help install install-dev test lint format clean train eval docs

# Default target
help:
	@echo "Available commands:"
	@echo "  install      Install production dependencies"
	@echo "  install-dev  Install development dependencies"
	@echo "  test         Run unit tests"
	@echo "  lint         Run code linting"
	@echo "  format       Format code with black and isort"
	@echo "  clean        Clean temporary files"
	@echo "  train        Run training script"
	@echo "  eval         Run evaluation script"
	@echo "  docs         Build documentation"

# Installation
install:
	pip install -r requirements.txt
	pip install -e .

install-dev:
	pip install -r requirements.txt
	pip install -r requirements-dev.txt
	pip install -e .
	pre-commit install

# Testing
test:
	pytest tests/ -v --cov=src/oneprompt_seg --cov-report=html

test-quick:
	pytest tests/ -v -x

# Linting and formatting
lint:
	flake8 src/ tests/
	mypy src/

format:
	black src/ tests/ scripts/
	isort src/ tests/ scripts/

# Cleaning
clean:
	find . -type f -name "*.pyc" -delete
	find . -type d -name "__pycache__" -delete
	find . -type d -name ".pytest_cache" -delete
	find . -type d -name ".mypy_cache" -delete
	rm -rf build/ dist/ *.egg-info/
	rm -rf .coverage htmlcov/

# Training and evaluation
train:
	python scripts/train.py --config configs/default.yaml

train-polyp:
	python scripts/train.py \
		-net oneprompt \
		-mod one_adpt \
		-exp_name polyp_training \
		-dataset polyp \
		-data_path ./data/polyp

eval:
	python scripts/val.py --config configs/default.yaml

# Documentation
docs:
	cd docs && make html

docs-clean:
	cd docs && make clean