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152 lines
3.4 KiB
152 lines
3.4 KiB
[build-system]
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requires = ["setuptools>=61.0", "wheel"]
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build-backend = "setuptools.build_meta"
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[project]
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name = "oneprompt-seg"
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version = "1.0.0"
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description = "One-Prompt to Segment All Medical Images"
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readme = "README.md"
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license = {text = "MIT"}
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authors = [
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{name = "One-Prompt Team", email = "oneprompt@example.com"}
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]
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keywords = [
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"medical imaging",
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"image segmentation",
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"deep learning",
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"pytorch",
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"computer vision"
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]
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classifiers = [
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"Development Status :: 4 - Beta",
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"Intended Audience :: Science/Research",
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"Intended Audience :: Healthcare Industry",
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"License :: OSI Approved :: MIT License",
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"Operating System :: OS Independent",
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"Programming Language :: Python :: 3",
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"Programming Language :: Python :: 3.8",
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"Programming Language :: Python :: 3.9",
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"Programming Language :: Python :: 3.10",
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"Programming Language :: Python :: 3.11",
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"Topic :: Scientific/Engineering :: Artificial Intelligence",
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"Topic :: Scientific/Engineering :: Medical Science Apps.",
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]
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requires-python = ">=3.8"
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dependencies = [
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"torch>=1.10.0",
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"torchvision>=0.11.0",
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"numpy>=1.19.0",
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"pandas>=1.3.0",
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"Pillow>=8.0.0",
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"scikit-image>=0.18.0",
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"scikit-learn>=0.24.0",
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"monai>=0.8.0",
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"einops>=0.4.0",
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"tensorboardX>=2.4.0",
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"tqdm>=4.60.0",
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"python-dateutil>=2.8.0",
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"PyYAML>=5.4.0",
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"matplotlib>=3.3.0",
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"seaborn>=0.11.0",
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"opencv-python>=4.5.0",
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]
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[project.optional-dependencies]
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dev = [
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"pytest>=6.0.0",
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"pytest-cov>=2.12.0",
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"black>=21.0.0",
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"isort>=5.9.0",
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"flake8>=3.9.0",
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"mypy>=0.900",
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"pre-commit>=2.13.0",
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]
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docs = [
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"sphinx>=4.0.0",
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"sphinx-rtd-theme>=0.5.0",
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"sphinx-autodoc-typehints>=1.12.0",
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]
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[project.urls]
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Homepage = "https://github.com/oneprompt/One-Prompt-Medical-Image-Segmentation"
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Documentation = "https://oneprompt-seg.readthedocs.io"
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Repository = "https://github.com/oneprompt/One-Prompt-Medical-Image-Segmentation"
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Issues = "https://github.com/oneprompt/One-Prompt-Medical-Image-Segmentation/issues"
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[project.scripts]
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oneprompt-train = "scripts.train:main"
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oneprompt-val = "scripts.val:main"
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[tool.setuptools.packages.find]
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where = ["src"]
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[tool.setuptools.package-data]
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"*" = ["*.yaml", "*.yml", "*.json"]
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# Black configuration
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[tool.black]
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line-length = 88
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target-version = ['py38', 'py39', 'py310', 'py311']
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include = '\.pyi?$'
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extend-exclude = '''
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/(
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\.git
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| \.mypy_cache
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| \.pytest_cache
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| \.venv
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| build
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| dist
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| __pycache__
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)/
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'''
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# isort configuration
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[tool.isort]
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profile = "black"
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line_length = 88
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skip_gitignore = true
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known_first_party = ["oneprompt_seg"]
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known_third_party = ["torch", "torchvision", "numpy", "pandas", "monai"]
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# pytest configuration
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[tool.pytest.ini_options]
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testpaths = ["tests"]
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python_files = ["test_*.py"]
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python_functions = ["test_*"]
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addopts = "-v --tb=short"
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filterwarnings = [
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"ignore::DeprecationWarning",
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"ignore::UserWarning",
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]
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# mypy configuration
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[tool.mypy]
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python_version = "3.8"
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warn_return_any = true
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warn_unused_configs = true
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ignore_missing_imports = true
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exclude = [
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"build",
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"dist",
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"docs",
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]
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# Coverage configuration
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[tool.coverage.run]
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source = ["src/oneprompt_seg"]
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branch = true
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omit = [
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"*/tests/*",
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"*/__pycache__/*",
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]
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[tool.coverage.report]
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exclude_lines = [
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"pragma: no cover",
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"def __repr__",
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"raise AssertionError",
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"raise NotImplementedError",
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"if __name__ == .__main__.:",
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]
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