/*********************************************************************** * Software License Agreement (BSD License) * * Copyright 2008-2009 Marius Muja (mariusm@cs.ubc.ca). All rights reserved. * Copyright 2008-2009 David G. Lowe (lowe@cs.ubc.ca). All rights reserved. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions * are met: * * 1. Redistributions of source code must retain the above copyright * notice, this list of conditions and the following disclaimer. * 2. Redistributions in binary form must reproduce the above copyright * notice, this list of conditions and the following disclaimer in the * documentation and/or other materials provided with the distribution. * * THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR * IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. * IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, * INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF * THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. *************************************************************************/ #define FLANN_FIRST_MATCH #include "flann.h" struct FLANNParameters DEFAULT_FLANN_PARAMETERS = { FLANN_INDEX_KDTREE, 32, 0.0f, 0, -1, 0, 4, 4, 32, 11, FLANN_CENTERS_RANDOM, 0.2f, 0.9f, 0.01f, 0, 0.1f, FLANN_LOG_NONE, 0 }; using namespace flann; flann::IndexParams create_parameters(FLANNParameters* p) { flann::IndexParams params; params["algorithm"] = p->algorithm; params["checks"] = p->checks; params["cb_index"] = p->cb_index; params["eps"] = p->eps; if (p->algorithm == FLANN_INDEX_KDTREE) { params["trees"] = p->trees; } if (p->algorithm == FLANN_INDEX_KDTREE_SINGLE) { params["trees"] = p->trees; params["leaf_max_size"] = p->leaf_max_size; } #ifdef FLANN_USE_CUDA if (p->algorithm == FLANN_INDEX_KDTREE_CUDA) { params["leaf_max_size"] = p->leaf_max_size; } #endif if (p->algorithm == FLANN_INDEX_KMEANS) { params["branching"] = p->branching; params["iterations"] = p->iterations; params["centers_init"] = p->centers_init; } if (p->algorithm == FLANN_INDEX_AUTOTUNED) { params["target_precision"] = p->target_precision; params["build_weight"] = p->build_weight; params["memory_weight"] = p->memory_weight; params["sample_fraction"] = p->sample_fraction; } if (p->algorithm == FLANN_INDEX_HIERARCHICAL) { params["branching"] = p->branching; params["centers_init"] = p->centers_init; params["trees"] = p->trees; params["leaf_max_size"] = p->leaf_max_size; } if (p->algorithm == FLANN_INDEX_LSH) { params["table_number"] = p->table_number_; params["key_size"] = p->key_size_; params["multi_probe_level"] = p->multi_probe_level_; } params["log_level"] = p->log_level; params["random_seed"] = p->random_seed; return params; } flann::SearchParams create_search_params(FLANNParameters* p) { flann::SearchParams params; params.checks = p->checks; params.eps = p->eps; params.sorted = p->sorted; params.max_neighbors = p->max_neighbors; params.cores = p->cores; return params; } void update_flann_parameters(const IndexParams& params, FLANNParameters* flann_params) { if (has_param(params,"algorithm")) { flann_params->algorithm = get_param<flann_algorithm_t>(params,"algorithm"); } if (has_param(params,"trees")) { flann_params->trees = get_param<int>(params,"trees"); } if (has_param(params,"leaf_max_size")) { flann_params->leaf_max_size = get_param<int>(params,"leaf_max_size"); } if (has_param(params,"branching")) { flann_params->branching = get_param<int>(params,"branching"); } if (has_param(params,"iterations")) { flann_params->iterations = get_param<int>(params,"iterations"); } if (has_param(params,"centers_init")) { flann_params->centers_init = get_param<flann_centers_init_t>(params,"centers_init"); } if (has_param(params,"target_precision")) { flann_params->target_precision = get_param<float>(params,"target_precision"); } if (has_param(params,"build_weight")) { flann_params->build_weight = get_param<float>(params,"build_weight"); } if (has_param(params,"memory_weight")) { flann_params->memory_weight = get_param<float>(params,"memory_weight"); } if (has_param(params,"sample_fraction")) { flann_params->sample_fraction = get_param<float>(params,"sample_fraction"); } if (has_param(params,"table_number")) { flann_params->table_number_ = get_param<unsigned int>(params,"table_number"); } if (has_param(params,"key_size")) { flann_params->key_size_ = get_param<unsigned int>(params,"key_size"); } if (has_param(params,"multi_probe_level")) { flann_params->multi_probe_level_ = get_param<unsigned int>(params,"multi_probe_level"); } if (has_param(params,"log_level")) { flann_params->log_level = get_param<flann_log_level_t>(params,"log_level"); } if (has_param(params,"random_seed")) { flann_params->random_seed = get_param<long>(params,"random_seed"); } } void init_flann_parameters(FLANNParameters* p) { if (p != NULL) { flann_log_verbosity(p->log_level); if (p->random_seed>0) { seed_random(p->random_seed); } } } void flann_log_verbosity(int level) { flann::log_verbosity(level); } flann_distance_t flann_distance_type = FLANN_DIST_EUCLIDEAN; int flann_distance_order = 3; void flann_set_distance_type(flann_distance_t distance_type, int order) { flann_distance_type = distance_type; flann_distance_order = order; } flann_distance_t flann_get_distance_type() { return flann_distance_type; } int flann_get_distance_order() { return flann_distance_order; } template<typename Distance> flann_index_t __flann_build_index(typename Distance::ElementType* dataset, int rows, int cols, float* speedup, FLANNParameters* flann_params, Distance d = Distance()) { typedef typename Distance::ElementType ElementType; try { init_flann_parameters(flann_params); if (flann_params == NULL) { throw FLANNException("The flann_params argument must be non-null"); } IndexParams params = create_parameters(flann_params); Index<Distance>* index = new Index<Distance>(Matrix<ElementType>(dataset,rows,cols), params, d); index->buildIndex(); if (flann_params->algorithm==FLANN_INDEX_AUTOTUNED) { IndexParams params = index->getParameters(); update_flann_parameters(params,flann_params); SearchParams search_params = get_param<SearchParams>(params,"search_params"); *speedup = get_param<float>(params,"speedup"); flann_params->checks = search_params.checks; flann_params->eps = search_params.eps; flann_params->cb_index = get_param<float>(params,"cb_index",0.0); } return index; } catch (std::runtime_error& e) { Logger::error("Caught exception: %s\n",e.what()); return NULL; } } template<typename T> flann_index_t _flann_build_index(T* dataset, int rows, int cols, float* speedup, FLANNParameters* flann_params) { if (flann_distance_type==FLANN_DIST_EUCLIDEAN) { return __flann_build_index<L2<T> >(dataset, rows, cols, speedup, flann_params); } else if (flann_distance_type==FLANN_DIST_MANHATTAN) { return __flann_build_index<L1<T> >(dataset, rows, cols, speedup, flann_params); } else if (flann_distance_type==FLANN_DIST_MINKOWSKI) { return __flann_build_index<MinkowskiDistance<T> >(dataset, rows, cols, speedup, flann_params, MinkowskiDistance<T>(flann_distance_order)); } else if (flann_distance_type==FLANN_DIST_HIST_INTERSECT) { return __flann_build_index<HistIntersectionDistance<T> >(dataset, rows, cols, speedup, flann_params); } else if (flann_distance_type==FLANN_DIST_HELLINGER) { return __flann_build_index<HellingerDistance<T> >(dataset, rows, cols, speedup, flann_params); } else if (flann_distance_type==FLANN_DIST_CHI_SQUARE) { return __flann_build_index<ChiSquareDistance<T> >(dataset, rows, cols, speedup, flann_params); } else if (flann_distance_type==FLANN_DIST_KULLBACK_LEIBLER) { return __flann_build_index<KL_Divergence<T> >(dataset, rows, cols, speedup, flann_params); } else { Logger::error( "Distance type unsupported in the C bindings, use the C++ bindings instead\n"); return NULL; } } flann_index_t flann_build_index(float* dataset, int rows, int cols, float* speedup, FLANNParameters* flann_params) { return _flann_build_index<float>(dataset, rows, cols, speedup, flann_params); } flann_index_t flann_build_index_float(float* dataset, int rows, int cols, float* speedup, FLANNParameters* flann_params) { return _flann_build_index<float>(dataset, rows, cols, speedup, flann_params); } flann_index_t flann_build_index_double(double* dataset, int rows, int cols, float* speedup, FLANNParameters* flann_params) { return _flann_build_index<double>(dataset, rows, cols, speedup, flann_params); } flann_index_t flann_build_index_byte(unsigned char* dataset, int rows, int cols, float* speedup, FLANNParameters* flann_params) { return _flann_build_index<unsigned char>(dataset, rows, cols, speedup, flann_params); } flann_index_t flann_build_index_int(int* dataset, int rows, int cols, float* speedup, FLANNParameters* flann_params) { return _flann_build_index<int>(dataset, rows, cols, speedup, flann_params); } template <typename Distance> int __flann_add_points(flann_index_t index_ptr, typename Distance::ElementType* points, int rows, int columns, float rebuild_threshold) { typedef typename Distance::ElementType ElementType; try { if (index_ptr==NULL) { throw FLANNException("Invalid index"); } Index<Distance>* index = (Index<Distance>*)index_ptr; index->addPoints(Matrix<ElementType>(points, rows, columns), rebuild_threshold); return 0; } catch (std::runtime_error& e) { Logger::error("Caught exception: %s\n",e.what()); return -1; } return -1; } template <typename T> int _flann_add_points(flann_index_t index_ptr, T* points, int rows, int columns, float rebuild_threshold) { if (flann_distance_type==FLANN_DIST_EUCLIDEAN) { return __flann_add_points<L2<T> >(index_ptr, points, rows, columns, rebuild_threshold); } else if (flann_distance_type==FLANN_DIST_MANHATTAN) { return __flann_add_points<L1<T> >(index_ptr, points, rows, columns, rebuild_threshold); } else if (flann_distance_type==FLANN_DIST_MINKOWSKI) { return __flann_add_points<MinkowskiDistance<T> >(index_ptr, points, rows, columns, rebuild_threshold); } else if (flann_distance_type==FLANN_DIST_HIST_INTERSECT) { return __flann_add_points<HistIntersectionDistance<T> >(index_ptr, points, rows, columns, rebuild_threshold); } else if (flann_distance_type==FLANN_DIST_HELLINGER) { return __flann_add_points<HellingerDistance<T> >(index_ptr, points, rows, columns, rebuild_threshold); } else if (flann_distance_type==FLANN_DIST_CHI_SQUARE) { return __flann_add_points<ChiSquareDistance<T> >(index_ptr, points, rows, columns, rebuild_threshold); } else if (flann_distance_type==FLANN_DIST_KULLBACK_LEIBLER) { return __flann_add_points<KL_Divergence<T> >(index_ptr, points, rows, columns, rebuild_threshold); } else { Logger::error( "Distance type unsupported in the C bindings, use the C++ bindings instead\n"); return 0; } } int flann_add_points(flann_index_t index_ptr, float* points, int rows, int columns, float rebuild_threshold) { return _flann_add_points<float>(index_ptr, points, rows, columns, rebuild_threshold); } int flann_add_points_float(flann_index_t index_ptr, float* points, int rows, int columns, float rebuild_threshold) { return _flann_add_points<float>(index_ptr, points, rows, columns, rebuild_threshold); } int flann_add_points_double(flann_index_t index_ptr, double* points, int rows, int columns, float rebuild_threshold) { return _flann_add_points<double>(index_ptr, points, rows, columns, rebuild_threshold); } int flann_add_points_byte(flann_index_t index_ptr, unsigned char* points, int rows, int columns, float rebuild_threshold) { return _flann_add_points<unsigned char>(index_ptr, points, rows, columns, rebuild_threshold); } int flann_add_points_int(flann_index_t index_ptr, int* points, int rows, int columns, float rebuild_threshold) { return _flann_add_points<int>(index_ptr, points, rows, columns, rebuild_threshold); } template <typename Distance> int __flann_remove_point(flann_index_t index_ptr, unsigned int point_id_uint) { size_t point_id(point_id_uint); try { if (index_ptr==NULL) { throw FLANNException("Invalid index"); } Index<Distance>* index = (Index<Distance>*)index_ptr; index->removePoint(point_id); return 0; } catch (std::runtime_error& e) { Logger::error("Caught exception: %s\n",e.what()); return -1; } return -1; } template <typename T> int _flann_remove_point(flann_index_t index_ptr, unsigned int point_id) { if (flann_distance_type==FLANN_DIST_EUCLIDEAN) { return __flann_remove_point<L2<T> >(index_ptr, point_id); } else if (flann_distance_type==FLANN_DIST_MANHATTAN) { return __flann_remove_point<L1<T> >(index_ptr, point_id); } else if (flann_distance_type==FLANN_DIST_MINKOWSKI) { return __flann_remove_point<MinkowskiDistance<T> >(index_ptr, point_id); } else if (flann_distance_type==FLANN_DIST_HIST_INTERSECT) { return __flann_remove_point<HistIntersectionDistance<T> >(index_ptr, point_id); } else if (flann_distance_type==FLANN_DIST_HELLINGER) { return __flann_remove_point<HellingerDistance<T> >(index_ptr, point_id); } else if (flann_distance_type==FLANN_DIST_CHI_SQUARE) { return __flann_remove_point<ChiSquareDistance<T> >(index_ptr, point_id); } else if (flann_distance_type==FLANN_DIST_KULLBACK_LEIBLER) { return __flann_remove_point<KL_Divergence<T> >(index_ptr, point_id); } else { Logger::error( "Distance type unsupported in the C bindings, use the C++ bindings instead\n"); return 0; } } int flann_remove_point(flann_index_t index_ptr, unsigned int point_id) { return _flann_remove_point<float>(index_ptr, point_id); } int flann_remove_point_float(flann_index_t index_ptr, unsigned int point_id) { return _flann_remove_point<float>(index_ptr, point_id); } int flann_remove_point_double(flann_index_t index_ptr, unsigned int point_id) { return _flann_remove_point<double>(index_ptr, point_id); } int flann_remove_point_byte(flann_index_t index_ptr, unsigned int point_id) { return _flann_remove_point<unsigned char>(index_ptr, point_id); } int flann_remove_point_int(flann_index_t index_ptr, unsigned int point_id) { return _flann_remove_point<int>(index_ptr, point_id); } template <typename Distance> typename Distance::ElementType* __flann_get_point(flann_index_t index_ptr, unsigned int point_id_uint) { size_t point_id(point_id_uint); try { if (index_ptr==NULL) { throw FLANNException("Invalid index"); } Index<Distance>* index = (Index<Distance>*)index_ptr; return index->getPoint(point_id); } catch (std::runtime_error& e) { Logger::error("Caught exception: %s\n",e.what()); return NULL; } } template <typename T> T* _flann_get_point(flann_index_t index_ptr, unsigned int point_id) { if (flann_distance_type==FLANN_DIST_EUCLIDEAN) { return __flann_get_point<L2<T> >(index_ptr, point_id); } else if (flann_distance_type==FLANN_DIST_MANHATTAN) { return __flann_get_point<L1<T> >(index_ptr, point_id); } else if (flann_distance_type==FLANN_DIST_MINKOWSKI) { return __flann_get_point<MinkowskiDistance<T> >(index_ptr, point_id); } else if (flann_distance_type==FLANN_DIST_HIST_INTERSECT) { return __flann_get_point<HistIntersectionDistance<T> >(index_ptr, point_id); } else if (flann_distance_type==FLANN_DIST_HELLINGER) { return __flann_get_point<HellingerDistance<T> >(index_ptr, point_id); } else if (flann_distance_type==FLANN_DIST_CHI_SQUARE) { return __flann_get_point<ChiSquareDistance<T> >(index_ptr, point_id); } else if (flann_distance_type==FLANN_DIST_KULLBACK_LEIBLER) { return __flann_get_point<KL_Divergence<T> >(index_ptr, point_id); } else { Logger::error( "Distance type unsupported in the C bindings, use the C++ bindings instead\n"); return NULL; } } float* flann_get_point(flann_index_t index_ptr, unsigned int point_id) { return _flann_get_point<float>(index_ptr, point_id); } float* flann_get_point_float(flann_index_t index_ptr, unsigned int point_id) { return _flann_get_point<float>(index_ptr, point_id); } double* flann_get_point_double(flann_index_t index_ptr, unsigned int point_id) { return _flann_get_point<double>(index_ptr, point_id); } unsigned char* flann_get_point_byte(flann_index_t index_ptr, unsigned int point_id) { return _flann_get_point<unsigned char>(index_ptr, point_id); } int* flann_get_point_int(flann_index_t index_ptr, unsigned int point_id) { return _flann_get_point<int>(index_ptr, point_id); } template <typename Distance> unsigned int __flann_veclen(flann_index_t index_ptr) { try { if (index_ptr==NULL) { throw FLANNException("Invalid index"); } Index<Distance>* index = (Index<Distance>*)index_ptr; return index->veclen(); } catch (std::runtime_error& e) { Logger::error("Caught exception: %s\n",e.what()); return 0; } } template <typename T> unsigned int _flann_veclen(flann_index_t index_ptr) { if (flann_distance_type==FLANN_DIST_EUCLIDEAN) { return __flann_veclen<L2<T> >(index_ptr); } else if (flann_distance_type==FLANN_DIST_MANHATTAN) { return __flann_veclen<L1<T> >(index_ptr); } else if (flann_distance_type==FLANN_DIST_MINKOWSKI) { return __flann_veclen<MinkowskiDistance<T> >(index_ptr); } else if (flann_distance_type==FLANN_DIST_HIST_INTERSECT) { return __flann_veclen<HistIntersectionDistance<T> >(index_ptr); } else if (flann_distance_type==FLANN_DIST_HELLINGER) { return __flann_veclen<HellingerDistance<T> >(index_ptr); } else if (flann_distance_type==FLANN_DIST_CHI_SQUARE) { return __flann_veclen<ChiSquareDistance<T> >(index_ptr); } else if (flann_distance_type==FLANN_DIST_KULLBACK_LEIBLER) { return __flann_veclen<KL_Divergence<T> >(index_ptr); } else { Logger::error( "Distance type unsupported in the C bindings, use the C++ bindings instead\n"); return 0; } } unsigned int flann_veclen(flann_index_t index_ptr) { return _flann_veclen<float>(index_ptr); } unsigned int flann_veclen_float(flann_index_t index_ptr) { return _flann_veclen<float>(index_ptr); } unsigned int flann_veclen_double(flann_index_t index_ptr) { return _flann_veclen<double>(index_ptr); } unsigned int flann_veclen_byte(flann_index_t index_ptr) { return _flann_veclen<unsigned char>(index_ptr); } unsigned int flann_veclen_int(flann_index_t index_ptr) { return _flann_veclen<int>(index_ptr); } template <typename Distance> unsigned int __flann_size(flann_index_t index_ptr) { try { if (index_ptr==NULL) { throw FLANNException("Invalid index"); } Index<Distance>* index = (Index<Distance>*)index_ptr; return index->size(); } catch (std::runtime_error& e) { Logger::error("Caught exception: %s\n",e.what()); return 0; } } template <typename T> unsigned int _flann_size(flann_index_t index_ptr) { if (flann_distance_type==FLANN_DIST_EUCLIDEAN) { return __flann_size<L2<T> >(index_ptr); } else if (flann_distance_type==FLANN_DIST_MANHATTAN) { return __flann_size<L1<T> >(index_ptr); } else if (flann_distance_type==FLANN_DIST_MINKOWSKI) { return __flann_size<MinkowskiDistance<T> >(index_ptr); } else if (flann_distance_type==FLANN_DIST_HIST_INTERSECT) { return __flann_size<HistIntersectionDistance<T> >(index_ptr); } else if (flann_distance_type==FLANN_DIST_HELLINGER) { return __flann_size<HellingerDistance<T> >(index_ptr); } else if (flann_distance_type==FLANN_DIST_CHI_SQUARE) { return __flann_size<ChiSquareDistance<T> >(index_ptr); } else if (flann_distance_type==FLANN_DIST_KULLBACK_LEIBLER) { return __flann_size<KL_Divergence<T> >(index_ptr); } else { Logger::error( "Distance type unsupported in the C bindings, use the C++ bindings instead\n"); return 0; } } unsigned int flann_size(flann_index_t index_ptr) { return _flann_size<float>(index_ptr); } unsigned int flann_size_float(flann_index_t index_ptr) { return _flann_size<float>(index_ptr); } unsigned int flann_size_double(flann_index_t index_ptr) { return _flann_size<double>(index_ptr); } unsigned int flann_size_byte(flann_index_t index_ptr) { return _flann_size<unsigned char>(index_ptr); } unsigned int flann_size_int(flann_index_t index_ptr) { return _flann_size<int>(index_ptr); } template <typename Distance> int __flann_used_memory(flann_index_t index_ptr) { try { if (index_ptr==NULL) { throw FLANNException("Invalid index"); } Index<Distance>* index = (Index<Distance>*)index_ptr; return index->usedMemory(); } catch (std::runtime_error& e) { Logger::error("Caught exception: %s\n",e.what()); return 0; } } template <typename T> int _flann_used_memory(flann_index_t index_ptr) { if (flann_distance_type==FLANN_DIST_EUCLIDEAN) { return __flann_used_memory<L2<T> >(index_ptr); } else if (flann_distance_type==FLANN_DIST_MANHATTAN) { return __flann_used_memory<L1<T> >(index_ptr); } else if (flann_distance_type==FLANN_DIST_MINKOWSKI) { return __flann_used_memory<MinkowskiDistance<T> >(index_ptr); } else if (flann_distance_type==FLANN_DIST_HIST_INTERSECT) { return __flann_used_memory<HistIntersectionDistance<T> >(index_ptr); } else if (flann_distance_type==FLANN_DIST_HELLINGER) { return __flann_used_memory<HellingerDistance<T> >(index_ptr); } else if (flann_distance_type==FLANN_DIST_CHI_SQUARE) { return __flann_used_memory<ChiSquareDistance<T> >(index_ptr); } else if (flann_distance_type==FLANN_DIST_KULLBACK_LEIBLER) { return __flann_used_memory<KL_Divergence<T> >(index_ptr); } else { Logger::error( "Distance type unsupported in the C bindings, use the C++ bindings instead\n"); return 0; } } int flann_used_memory(flann_index_t index_ptr) { return _flann_used_memory<float>(index_ptr); } int flann_used_memory_float(flann_index_t index_ptr) { return _flann_used_memory<float>(index_ptr); } int flann_used_memory_double(flann_index_t index_ptr) { return _flann_used_memory<double>(index_ptr); } int flann_used_memory_byte(flann_index_t index_ptr) { return _flann_used_memory<unsigned char>(index_ptr); } int flann_used_memory_int(flann_index_t index_ptr) { return _flann_used_memory<int>(index_ptr); } template<typename Distance> int __flann_save_index(flann_index_t index_ptr, char* filename) { try { if (index_ptr==NULL) { throw FLANNException("Invalid index"); } Index<Distance>* index = (Index<Distance>*)index_ptr; index->save(filename); return 0; } catch (std::runtime_error& e) { Logger::error("Caught exception: %s\n",e.what()); return -1; } } template<typename T> int _flann_save_index(flann_index_t index_ptr, char* filename) { if (flann_distance_type==FLANN_DIST_EUCLIDEAN) { return __flann_save_index<L2<T> >(index_ptr, filename); } else if (flann_distance_type==FLANN_DIST_MANHATTAN) { return __flann_save_index<L1<T> >(index_ptr, filename); } else if (flann_distance_type==FLANN_DIST_MINKOWSKI) { return __flann_save_index<MinkowskiDistance<T> >(index_ptr, filename); } else if (flann_distance_type==FLANN_DIST_HIST_INTERSECT) { return __flann_save_index<HistIntersectionDistance<T> >(index_ptr, filename); } else if (flann_distance_type==FLANN_DIST_HELLINGER) { return __flann_save_index<HellingerDistance<T> >(index_ptr, filename); } else if (flann_distance_type==FLANN_DIST_CHI_SQUARE) { return __flann_save_index<ChiSquareDistance<T> >(index_ptr, filename); } else if (flann_distance_type==FLANN_DIST_KULLBACK_LEIBLER) { return __flann_save_index<KL_Divergence<T> >(index_ptr, filename); } else { Logger::error( "Distance type unsupported in the C bindings, use the C++ bindings instead\n"); return -1; } } int flann_save_index(flann_index_t index_ptr, char* filename) { return _flann_save_index<float>(index_ptr, filename); } int flann_save_index_float(flann_index_t index_ptr, char* filename) { return _flann_save_index<float>(index_ptr, filename); } int flann_save_index_double(flann_index_t index_ptr, char* filename) { return _flann_save_index<double>(index_ptr, filename); } int flann_save_index_byte(flann_index_t index_ptr, char* filename) { return _flann_save_index<unsigned char>(index_ptr, filename); } int flann_save_index_int(flann_index_t index_ptr, char* filename) { return _flann_save_index<int>(index_ptr, filename); } template<typename Distance> flann_index_t __flann_load_index(char* filename, typename Distance::ElementType* dataset, int rows, int cols, Distance d = Distance()) { try { Index<Distance>* index = new Index<Distance>(Matrix<typename Distance::ElementType>(dataset,rows,cols), SavedIndexParams(filename), d); return index; } catch (std::runtime_error& e) { Logger::error("Caught exception: %s\n",e.what()); return NULL; } } template<typename T> flann_index_t _flann_load_index(char* filename, T* dataset, int rows, int cols) { if (flann_distance_type==FLANN_DIST_EUCLIDEAN) { return __flann_load_index<L2<T> >(filename, dataset, rows, cols); } else if (flann_distance_type==FLANN_DIST_MANHATTAN) { return __flann_load_index<L1<T> >(filename, dataset, rows, cols); } else if (flann_distance_type==FLANN_DIST_MINKOWSKI) { return __flann_load_index<MinkowskiDistance<T> >(filename, dataset, rows, cols, MinkowskiDistance<T>(flann_distance_order)); } else if (flann_distance_type==FLANN_DIST_HIST_INTERSECT) { return __flann_load_index<HistIntersectionDistance<T> >(filename, dataset, rows, cols); } else if (flann_distance_type==FLANN_DIST_HELLINGER) { return __flann_load_index<HellingerDistance<T> >(filename, dataset, rows, cols); } else if (flann_distance_type==FLANN_DIST_CHI_SQUARE) { return __flann_load_index<ChiSquareDistance<T> >(filename, dataset, rows, cols); } else if (flann_distance_type==FLANN_DIST_KULLBACK_LEIBLER) { return __flann_load_index<KL_Divergence<T> >(filename, dataset, rows, cols); } else { Logger::error( "Distance type unsupported in the C bindings, use the C++ bindings instead\n"); return NULL; } } flann_index_t flann_load_index(char* filename, float* dataset, int rows, int cols) { return _flann_load_index<float>(filename, dataset, rows, cols); } flann_index_t flann_load_index_float(char* filename, float* dataset, int rows, int cols) { return _flann_load_index<float>(filename, dataset, rows, cols); } flann_index_t flann_load_index_double(char* filename, double* dataset, int rows, int cols) { return _flann_load_index<double>(filename, dataset, rows, cols); } flann_index_t flann_load_index_byte(char* filename, unsigned char* dataset, int rows, int cols) { return _flann_load_index<unsigned char>(filename, dataset, rows, cols); } flann_index_t flann_load_index_int(char* filename, int* dataset, int rows, int cols) { return _flann_load_index<int>(filename, dataset, rows, cols); } template<typename Distance> int __flann_find_nearest_neighbors(typename Distance::ElementType* dataset, int rows, int cols, typename Distance::ElementType* testset, int tcount, int* result, typename Distance::ResultType* dists, int nn, FLANNParameters* flann_params, Distance d = Distance()) { typedef typename Distance::ElementType ElementType; typedef typename Distance::ResultType DistanceType; try { init_flann_parameters(flann_params); IndexParams params = create_parameters(flann_params); Index<Distance>* index = new Index<Distance>(Matrix<ElementType>(dataset,rows,cols), params, d); index->buildIndex(); Matrix<int> m_indices(result,tcount, nn); Matrix<DistanceType> m_dists(dists,tcount, nn); SearchParams search_params = create_search_params(flann_params); index->knnSearch(Matrix<ElementType>(testset, tcount, index->veclen()), m_indices, m_dists, nn, search_params ); delete index; return 0; } catch (std::runtime_error& e) { Logger::error("Caught exception: %s\n",e.what()); return -1; } return -1; } template<typename T, typename R> int _flann_find_nearest_neighbors(T* dataset, int rows, int cols, T* testset, int tcount, int* result, R* dists, int nn, FLANNParameters* flann_params) { if (flann_distance_type==FLANN_DIST_EUCLIDEAN) { return __flann_find_nearest_neighbors<L2<T> >(dataset, rows, cols, testset, tcount, result, dists, nn, flann_params); } else if (flann_distance_type==FLANN_DIST_MANHATTAN) { return __flann_find_nearest_neighbors<L1<T> >(dataset, rows, cols, testset, tcount, result, dists, nn, flann_params); } else if (flann_distance_type==FLANN_DIST_MINKOWSKI) { return __flann_find_nearest_neighbors<MinkowskiDistance<T> >(dataset, rows, cols, testset, tcount, result, dists, nn, flann_params, MinkowskiDistance<T>(flann_distance_order)); } else if (flann_distance_type==FLANN_DIST_HIST_INTERSECT) { return __flann_find_nearest_neighbors<HistIntersectionDistance<T> >(dataset, rows, cols, testset, tcount, result, dists, nn, flann_params); } else if (flann_distance_type==FLANN_DIST_HELLINGER) { return __flann_find_nearest_neighbors<HellingerDistance<T> >(dataset, rows, cols, testset, tcount, result, dists, nn, flann_params); } else if (flann_distance_type==FLANN_DIST_CHI_SQUARE) { return __flann_find_nearest_neighbors<ChiSquareDistance<T> >(dataset, rows, cols, testset, tcount, result, dists, nn, flann_params); } else if (flann_distance_type==FLANN_DIST_KULLBACK_LEIBLER) { return __flann_find_nearest_neighbors<KL_Divergence<T> >(dataset, rows, cols, testset, tcount, result, dists, nn, flann_params); } else { Logger::error( "Distance type unsupported in the C bindings, use the C++ bindings instead\n"); return -1; } } int flann_find_nearest_neighbors(float* dataset, int rows, int cols, float* testset, int tcount, int* result, float* dists, int nn, FLANNParameters* flann_params) { return _flann_find_nearest_neighbors(dataset, rows, cols, testset, tcount, result, dists, nn, flann_params); } int flann_find_nearest_neighbors_float(float* dataset, int rows, int cols, float* testset, int tcount, int* result, float* dists, int nn, FLANNParameters* flann_params) { return _flann_find_nearest_neighbors(dataset, rows, cols, testset, tcount, result, dists, nn, flann_params); } int flann_find_nearest_neighbors_double(double* dataset, int rows, int cols, double* testset, int tcount, int* result, double* dists, int nn, FLANNParameters* flann_params) { return _flann_find_nearest_neighbors(dataset, rows, cols, testset, tcount, result, dists, nn, flann_params); } int flann_find_nearest_neighbors_byte(unsigned char* dataset, int rows, int cols, unsigned char* testset, int tcount, int* result, float* dists, int nn, FLANNParameters* flann_params) { return _flann_find_nearest_neighbors(dataset, rows, cols, testset, tcount, result, dists, nn, flann_params); } int flann_find_nearest_neighbors_int(int* dataset, int rows, int cols, int* testset, int tcount, int* result, float* dists, int nn, FLANNParameters* flann_params) { return _flann_find_nearest_neighbors(dataset, rows, cols, testset, tcount, result, dists, nn, flann_params); } template<typename Distance> int __flann_find_nearest_neighbors_index(flann_index_t index_ptr, typename Distance::ElementType* testset, int tcount, int* result, typename Distance::ResultType* dists, int nn, FLANNParameters* flann_params) { typedef typename Distance::ElementType ElementType; typedef typename Distance::ResultType DistanceType; try { init_flann_parameters(flann_params); if (index_ptr==NULL) { throw FLANNException("Invalid index"); } Index<Distance>* index = (Index<Distance>*)index_ptr; Matrix<int> m_indices(result,tcount, nn); Matrix<DistanceType> m_dists(dists, tcount, nn); SearchParams search_params = create_search_params(flann_params); index->knnSearch(Matrix<ElementType>(testset, tcount, index->veclen()), m_indices, m_dists, nn, search_params ); return 0; } catch (std::runtime_error& e) { Logger::error("Caught exception: %s\n",e.what()); return -1; } return -1; } template<typename T, typename R> int _flann_find_nearest_neighbors_index(flann_index_t index_ptr, T* testset, int tcount, int* result, R* dists, int nn, FLANNParameters* flann_params) { if (flann_distance_type==FLANN_DIST_EUCLIDEAN) { return __flann_find_nearest_neighbors_index<L2<T> >(index_ptr, testset, tcount, result, dists, nn, flann_params); } else if (flann_distance_type==FLANN_DIST_MANHATTAN) { return __flann_find_nearest_neighbors_index<L1<T> >(index_ptr, testset, tcount, result, dists, nn, flann_params); } else if (flann_distance_type==FLANN_DIST_MINKOWSKI) { return __flann_find_nearest_neighbors_index<MinkowskiDistance<T> >(index_ptr, testset, tcount, result, dists, nn, flann_params); } else if (flann_distance_type==FLANN_DIST_HIST_INTERSECT) { return __flann_find_nearest_neighbors_index<HistIntersectionDistance<T> >(index_ptr, testset, tcount, result, dists, nn, flann_params); } else if (flann_distance_type==FLANN_DIST_HELLINGER) { return __flann_find_nearest_neighbors_index<HellingerDistance<T> >(index_ptr, testset, tcount, result, dists, nn, flann_params); } else if (flann_distance_type==FLANN_DIST_CHI_SQUARE) { return __flann_find_nearest_neighbors_index<ChiSquareDistance<T> >(index_ptr, testset, tcount, result, dists, nn, flann_params); } else if (flann_distance_type==FLANN_DIST_KULLBACK_LEIBLER) { return __flann_find_nearest_neighbors_index<KL_Divergence<T> >(index_ptr, testset, tcount, result, dists, nn, flann_params); } else { Logger::error( "Distance type unsupported in the C bindings, use the C++ bindings instead\n"); return -1; } } int flann_find_nearest_neighbors_index(flann_index_t index_ptr, float* testset, int tcount, int* result, float* dists, int nn, FLANNParameters* flann_params) { return _flann_find_nearest_neighbors_index(index_ptr, testset, tcount, result, dists, nn, flann_params); } int flann_find_nearest_neighbors_index_float(flann_index_t index_ptr, float* testset, int tcount, int* result, float* dists, int nn, FLANNParameters* flann_params) { return _flann_find_nearest_neighbors_index(index_ptr, testset, tcount, result, dists, nn, flann_params); } int flann_find_nearest_neighbors_index_double(flann_index_t index_ptr, double* testset, int tcount, int* result, double* dists, int nn, FLANNParameters* flann_params) { return _flann_find_nearest_neighbors_index(index_ptr, testset, tcount, result, dists, nn, flann_params); } int flann_find_nearest_neighbors_index_byte(flann_index_t index_ptr, unsigned char* testset, int tcount, int* result, float* dists, int nn, FLANNParameters* flann_params) { return _flann_find_nearest_neighbors_index(index_ptr, testset, tcount, result, dists, nn, flann_params); } int flann_find_nearest_neighbors_index_int(flann_index_t index_ptr, int* testset, int tcount, int* result, float* dists, int nn, FLANNParameters* flann_params) { return _flann_find_nearest_neighbors_index(index_ptr, testset, tcount, result, dists, nn, flann_params); } template<typename Distance> int __flann_radius_search(flann_index_t index_ptr, typename Distance::ElementType* query, int* indices, typename Distance::ResultType* dists, int max_nn, float radius, FLANNParameters* flann_params) { typedef typename Distance::ElementType ElementType; typedef typename Distance::ResultType DistanceType; try { init_flann_parameters(flann_params); if (index_ptr==NULL) { throw FLANNException("Invalid index"); } Index<Distance>* index = (Index<Distance>*)index_ptr; Matrix<int> m_indices(indices, 1, max_nn); Matrix<DistanceType> m_dists(dists, 1, max_nn); SearchParams search_params = create_search_params(flann_params); int count = index->radiusSearch(Matrix<ElementType>(query, 1, index->veclen()), m_indices, m_dists, radius, search_params ); return count; } catch (std::runtime_error& e) { Logger::error("Caught exception: %s\n",e.what()); return -1; } } template<typename T, typename R> int _flann_radius_search(flann_index_t index_ptr, T* query, int* indices, R* dists, int max_nn, float radius, FLANNParameters* flann_params) { if (flann_distance_type==FLANN_DIST_EUCLIDEAN) { return __flann_radius_search<L2<T> >(index_ptr, query, indices, dists, max_nn, radius, flann_params); } else if (flann_distance_type==FLANN_DIST_MANHATTAN) { return __flann_radius_search<L1<T> >(index_ptr, query, indices, dists, max_nn, radius, flann_params); } else if (flann_distance_type==FLANN_DIST_MINKOWSKI) { return __flann_radius_search<MinkowskiDistance<T> >(index_ptr, query, indices, dists, max_nn, radius, flann_params); } else if (flann_distance_type==FLANN_DIST_HIST_INTERSECT) { return __flann_radius_search<HistIntersectionDistance<T> >(index_ptr, query, indices, dists, max_nn, radius, flann_params); } else if (flann_distance_type==FLANN_DIST_HELLINGER) { return __flann_radius_search<HellingerDistance<T> >(index_ptr, query, indices, dists, max_nn, radius, flann_params); } else if (flann_distance_type==FLANN_DIST_CHI_SQUARE) { return __flann_radius_search<ChiSquareDistance<T> >(index_ptr, query, indices, dists, max_nn, radius, flann_params); } else if (flann_distance_type==FLANN_DIST_KULLBACK_LEIBLER) { return __flann_radius_search<KL_Divergence<T> >(index_ptr, query, indices, dists, max_nn, radius, flann_params); } else { Logger::error( "Distance type unsupported in the C bindings, use the C++ bindings instead\n"); return -1; } } int flann_radius_search(flann_index_t index_ptr, float* query, int* indices, float* dists, int max_nn, float radius, FLANNParameters* flann_params) { return _flann_radius_search(index_ptr, query, indices, dists, max_nn, radius, flann_params); } int flann_radius_search_float(flann_index_t index_ptr, float* query, int* indices, float* dists, int max_nn, float radius, FLANNParameters* flann_params) { return _flann_radius_search(index_ptr, query, indices, dists, max_nn, radius, flann_params); } int flann_radius_search_double(flann_index_t index_ptr, double* query, int* indices, double* dists, int max_nn, float radius, FLANNParameters* flann_params) { return _flann_radius_search(index_ptr, query, indices, dists, max_nn, radius, flann_params); } int flann_radius_search_byte(flann_index_t index_ptr, unsigned char* query, int* indices, float* dists, int max_nn, float radius, FLANNParameters* flann_params) { return _flann_radius_search(index_ptr, query, indices, dists, max_nn, radius, flann_params); } int flann_radius_search_int(flann_index_t index_ptr, int* query, int* indices, float* dists, int max_nn, float radius, FLANNParameters* flann_params) { return _flann_radius_search(index_ptr, query, indices, dists, max_nn, radius, flann_params); } template<typename Distance> int __flann_free_index(flann_index_t index_ptr, FLANNParameters* flann_params) { try { init_flann_parameters(flann_params); if (index_ptr==NULL) { throw FLANNException("Invalid index"); } Index<Distance>* index = (Index<Distance>*)index_ptr; delete index; return 0; } catch (std::runtime_error& e) { Logger::error("Caught exception: %s\n",e.what()); return -1; } } template<typename T> int _flann_free_index(flann_index_t index_ptr, FLANNParameters* flann_params) { if (flann_distance_type==FLANN_DIST_EUCLIDEAN) { return __flann_free_index<L2<T> >(index_ptr, flann_params); } else if (flann_distance_type==FLANN_DIST_MANHATTAN) { return __flann_free_index<L1<T> >(index_ptr, flann_params); } else if (flann_distance_type==FLANN_DIST_MINKOWSKI) { return __flann_free_index<MinkowskiDistance<T> >(index_ptr, flann_params); } else if (flann_distance_type==FLANN_DIST_HIST_INTERSECT) { return __flann_free_index<HistIntersectionDistance<T> >(index_ptr, flann_params); } else if (flann_distance_type==FLANN_DIST_HELLINGER) { return __flann_free_index<HellingerDistance<T> >(index_ptr, flann_params); } else if (flann_distance_type==FLANN_DIST_CHI_SQUARE) { return __flann_free_index<ChiSquareDistance<T> >(index_ptr, flann_params); } else if (flann_distance_type==FLANN_DIST_KULLBACK_LEIBLER) { return __flann_free_index<KL_Divergence<T> >(index_ptr, flann_params); } else { Logger::error( "Distance type unsupported in the C bindings, use the C++ bindings instead\n"); return -1; } } int flann_free_index(flann_index_t index_ptr, FLANNParameters* flann_params) { return _flann_free_index<float>(index_ptr, flann_params); } int flann_free_index_float(flann_index_t index_ptr, FLANNParameters* flann_params) { return _flann_free_index<float>(index_ptr, flann_params); } int flann_free_index_double(flann_index_t index_ptr, FLANNParameters* flann_params) { return _flann_free_index<double>(index_ptr, flann_params); } int flann_free_index_byte(flann_index_t index_ptr, FLANNParameters* flann_params) { return _flann_free_index<unsigned char>(index_ptr, flann_params); } int flann_free_index_int(flann_index_t index_ptr, FLANNParameters* flann_params) { return _flann_free_index<int>(index_ptr, flann_params); } template<typename Distance> int __flann_compute_cluster_centers(typename Distance::ElementType* dataset, int rows, int cols, int clusters, typename Distance::ResultType* result, FLANNParameters* flann_params, Distance d = Distance()) { typedef typename Distance::ElementType ElementType; typedef typename Distance::ResultType DistanceType; try { init_flann_parameters(flann_params); Matrix<ElementType> inputData(dataset,rows,cols); KMeansIndexParams params(flann_params->branching, flann_params->iterations, flann_params->centers_init, flann_params->cb_index); Matrix<DistanceType> centers(result,clusters,cols); int clusterNum = hierarchicalClustering<Distance>(inputData, centers, params, d); return clusterNum; } catch (std::runtime_error& e) { Logger::error("Caught exception: %s\n",e.what()); return -1; } } template<typename T, typename R> int _flann_compute_cluster_centers(T* dataset, int rows, int cols, int clusters, R* result, FLANNParameters* flann_params) { if (flann_distance_type==FLANN_DIST_EUCLIDEAN) { return __flann_compute_cluster_centers<L2<T> >(dataset, rows, cols, clusters, result, flann_params); } else if (flann_distance_type==FLANN_DIST_MANHATTAN) { return __flann_compute_cluster_centers<L1<T> >(dataset, rows, cols, clusters, result, flann_params); } else if (flann_distance_type==FLANN_DIST_MINKOWSKI) { return __flann_compute_cluster_centers<MinkowskiDistance<T> >(dataset, rows, cols, clusters, result, flann_params, MinkowskiDistance<T>(flann_distance_order)); } else if (flann_distance_type==FLANN_DIST_HIST_INTERSECT) { return __flann_compute_cluster_centers<HistIntersectionDistance<T> >(dataset, rows, cols, clusters, result, flann_params); } else if (flann_distance_type==FLANN_DIST_HELLINGER) { return __flann_compute_cluster_centers<HellingerDistance<T> >(dataset, rows, cols, clusters, result, flann_params); } else if (flann_distance_type==FLANN_DIST_CHI_SQUARE) { return __flann_compute_cluster_centers<ChiSquareDistance<T> >(dataset, rows, cols, clusters, result, flann_params); } else if (flann_distance_type==FLANN_DIST_KULLBACK_LEIBLER) { return __flann_compute_cluster_centers<KL_Divergence<T> >(dataset, rows, cols, clusters, result, flann_params); } else { Logger::error( "Distance type unsupported in the C bindings, use the C++ bindings instead\n"); return -1; } } int flann_compute_cluster_centers(float* dataset, int rows, int cols, int clusters, float* result, FLANNParameters* flann_params) { return _flann_compute_cluster_centers(dataset, rows, cols, clusters, result, flann_params); } int flann_compute_cluster_centers_float(float* dataset, int rows, int cols, int clusters, float* result, FLANNParameters* flann_params) { return _flann_compute_cluster_centers(dataset, rows, cols, clusters, result, flann_params); } int flann_compute_cluster_centers_double(double* dataset, int rows, int cols, int clusters, double* result, FLANNParameters* flann_params) { return _flann_compute_cluster_centers(dataset, rows, cols, clusters, result, flann_params); } int flann_compute_cluster_centers_byte(unsigned char* dataset, int rows, int cols, int clusters, float* result, FLANNParameters* flann_params) { return _flann_compute_cluster_centers(dataset, rows, cols, clusters, result, flann_params); } int flann_compute_cluster_centers_int(int* dataset, int rows, int cols, int clusters, float* result, FLANNParameters* flann_params) { return _flann_compute_cluster_centers(dataset, rows, cols, clusters, result, flann_params); }