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437 lines
13 KiB
437 lines
13 KiB
6 months ago
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""" test orc compat """
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import datetime
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from decimal import Decimal
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from io import BytesIO
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import os
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import pathlib
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import numpy as np
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import pytest
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import pandas as pd
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from pandas import read_orc
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import pandas._testing as tm
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from pandas.core.arrays import StringArray
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pytest.importorskip("pyarrow.orc")
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import pyarrow as pa
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pytestmark = pytest.mark.filterwarnings(
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"ignore:Passing a BlockManager to DataFrame:DeprecationWarning"
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)
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@pytest.fixture
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def dirpath(datapath):
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return datapath("io", "data", "orc")
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@pytest.fixture(
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params=[
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np.array([1, 20], dtype="uint64"),
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pd.Series(["a", "b", "a"], dtype="category"),
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[pd.Interval(left=0, right=2), pd.Interval(left=0, right=5)],
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[pd.Period("2022-01-03", freq="D"), pd.Period("2022-01-04", freq="D")],
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]
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)
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def orc_writer_dtypes_not_supported(request):
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# Examples of dataframes with dtypes for which conversion to ORC
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# hasn't been implemented yet, that is, Category, unsigned integers,
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# interval, period and sparse.
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return pd.DataFrame({"unimpl": request.param})
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def test_orc_reader_empty(dirpath):
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columns = [
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"boolean1",
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"byte1",
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"short1",
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"int1",
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"long1",
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"float1",
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"double1",
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"bytes1",
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"string1",
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]
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dtypes = [
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"bool",
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"int8",
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"int16",
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"int32",
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"int64",
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"float32",
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"float64",
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"object",
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"object",
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]
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expected = pd.DataFrame(index=pd.RangeIndex(0))
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for colname, dtype in zip(columns, dtypes):
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expected[colname] = pd.Series(dtype=dtype)
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inputfile = os.path.join(dirpath, "TestOrcFile.emptyFile.orc")
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got = read_orc(inputfile, columns=columns)
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tm.assert_equal(expected, got)
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def test_orc_reader_basic(dirpath):
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data = {
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"boolean1": np.array([False, True], dtype="bool"),
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"byte1": np.array([1, 100], dtype="int8"),
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"short1": np.array([1024, 2048], dtype="int16"),
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"int1": np.array([65536, 65536], dtype="int32"),
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"long1": np.array([9223372036854775807, 9223372036854775807], dtype="int64"),
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"float1": np.array([1.0, 2.0], dtype="float32"),
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"double1": np.array([-15.0, -5.0], dtype="float64"),
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"bytes1": np.array([b"\x00\x01\x02\x03\x04", b""], dtype="object"),
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"string1": np.array(["hi", "bye"], dtype="object"),
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}
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expected = pd.DataFrame.from_dict(data)
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inputfile = os.path.join(dirpath, "TestOrcFile.test1.orc")
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got = read_orc(inputfile, columns=data.keys())
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tm.assert_equal(expected, got)
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def test_orc_reader_decimal(dirpath):
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# Only testing the first 10 rows of data
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data = {
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"_col0": np.array(
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[
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Decimal("-1000.50000"),
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Decimal("-999.60000"),
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Decimal("-998.70000"),
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Decimal("-997.80000"),
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Decimal("-996.90000"),
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Decimal("-995.10000"),
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Decimal("-994.11000"),
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Decimal("-993.12000"),
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Decimal("-992.13000"),
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Decimal("-991.14000"),
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],
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dtype="object",
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)
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}
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expected = pd.DataFrame.from_dict(data)
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inputfile = os.path.join(dirpath, "TestOrcFile.decimal.orc")
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got = read_orc(inputfile).iloc[:10]
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tm.assert_equal(expected, got)
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def test_orc_reader_date_low(dirpath):
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data = {
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"time": np.array(
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[
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"1900-05-05 12:34:56.100000",
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"1900-05-05 12:34:56.100100",
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"1900-05-05 12:34:56.100200",
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"1900-05-05 12:34:56.100300",
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"1900-05-05 12:34:56.100400",
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"1900-05-05 12:34:56.100500",
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"1900-05-05 12:34:56.100600",
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"1900-05-05 12:34:56.100700",
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"1900-05-05 12:34:56.100800",
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"1900-05-05 12:34:56.100900",
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],
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dtype="datetime64[ns]",
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),
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"date": np.array(
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[
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datetime.date(1900, 12, 25),
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datetime.date(1900, 12, 25),
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datetime.date(1900, 12, 25),
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datetime.date(1900, 12, 25),
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datetime.date(1900, 12, 25),
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datetime.date(1900, 12, 25),
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datetime.date(1900, 12, 25),
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datetime.date(1900, 12, 25),
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datetime.date(1900, 12, 25),
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datetime.date(1900, 12, 25),
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],
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dtype="object",
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),
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}
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expected = pd.DataFrame.from_dict(data)
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inputfile = os.path.join(dirpath, "TestOrcFile.testDate1900.orc")
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got = read_orc(inputfile).iloc[:10]
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tm.assert_equal(expected, got)
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def test_orc_reader_date_high(dirpath):
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data = {
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"time": np.array(
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[
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"2038-05-05 12:34:56.100000",
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"2038-05-05 12:34:56.100100",
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"2038-05-05 12:34:56.100200",
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"2038-05-05 12:34:56.100300",
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"2038-05-05 12:34:56.100400",
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"2038-05-05 12:34:56.100500",
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"2038-05-05 12:34:56.100600",
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"2038-05-05 12:34:56.100700",
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"2038-05-05 12:34:56.100800",
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"2038-05-05 12:34:56.100900",
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],
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dtype="datetime64[ns]",
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),
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"date": np.array(
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[
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datetime.date(2038, 12, 25),
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datetime.date(2038, 12, 25),
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datetime.date(2038, 12, 25),
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datetime.date(2038, 12, 25),
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datetime.date(2038, 12, 25),
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datetime.date(2038, 12, 25),
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datetime.date(2038, 12, 25),
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datetime.date(2038, 12, 25),
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datetime.date(2038, 12, 25),
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datetime.date(2038, 12, 25),
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],
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dtype="object",
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),
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}
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expected = pd.DataFrame.from_dict(data)
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inputfile = os.path.join(dirpath, "TestOrcFile.testDate2038.orc")
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got = read_orc(inputfile).iloc[:10]
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tm.assert_equal(expected, got)
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def test_orc_reader_snappy_compressed(dirpath):
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data = {
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"int1": np.array(
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[
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-1160101563,
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1181413113,
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2065821249,
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-267157795,
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172111193,
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1752363137,
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1406072123,
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1911809390,
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-1308542224,
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-467100286,
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],
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dtype="int32",
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),
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"string1": np.array(
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[
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"f50dcb8",
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"382fdaaa",
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"90758c6",
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"9e8caf3f",
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"ee97332b",
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"d634da1",
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"2bea4396",
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"d67d89e8",
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"ad71007e",
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"e8c82066",
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],
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dtype="object",
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),
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}
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expected = pd.DataFrame.from_dict(data)
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inputfile = os.path.join(dirpath, "TestOrcFile.testSnappy.orc")
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got = read_orc(inputfile).iloc[:10]
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tm.assert_equal(expected, got)
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def test_orc_roundtrip_file(dirpath):
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# GH44554
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# PyArrow gained ORC write support with the current argument order
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pytest.importorskip("pyarrow")
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data = {
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"boolean1": np.array([False, True], dtype="bool"),
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"byte1": np.array([1, 100], dtype="int8"),
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"short1": np.array([1024, 2048], dtype="int16"),
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"int1": np.array([65536, 65536], dtype="int32"),
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"long1": np.array([9223372036854775807, 9223372036854775807], dtype="int64"),
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"float1": np.array([1.0, 2.0], dtype="float32"),
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"double1": np.array([-15.0, -5.0], dtype="float64"),
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"bytes1": np.array([b"\x00\x01\x02\x03\x04", b""], dtype="object"),
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"string1": np.array(["hi", "bye"], dtype="object"),
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}
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expected = pd.DataFrame.from_dict(data)
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with tm.ensure_clean() as path:
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expected.to_orc(path)
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got = read_orc(path)
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tm.assert_equal(expected, got)
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def test_orc_roundtrip_bytesio():
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# GH44554
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# PyArrow gained ORC write support with the current argument order
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pytest.importorskip("pyarrow")
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data = {
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"boolean1": np.array([False, True], dtype="bool"),
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"byte1": np.array([1, 100], dtype="int8"),
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"short1": np.array([1024, 2048], dtype="int16"),
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"int1": np.array([65536, 65536], dtype="int32"),
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"long1": np.array([9223372036854775807, 9223372036854775807], dtype="int64"),
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"float1": np.array([1.0, 2.0], dtype="float32"),
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"double1": np.array([-15.0, -5.0], dtype="float64"),
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"bytes1": np.array([b"\x00\x01\x02\x03\x04", b""], dtype="object"),
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"string1": np.array(["hi", "bye"], dtype="object"),
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}
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expected = pd.DataFrame.from_dict(data)
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bytes = expected.to_orc()
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got = read_orc(BytesIO(bytes))
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tm.assert_equal(expected, got)
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def test_orc_writer_dtypes_not_supported(orc_writer_dtypes_not_supported):
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# GH44554
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# PyArrow gained ORC write support with the current argument order
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pytest.importorskip("pyarrow")
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msg = "The dtype of one or more columns is not supported yet."
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with pytest.raises(NotImplementedError, match=msg):
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orc_writer_dtypes_not_supported.to_orc()
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def test_orc_dtype_backend_pyarrow():
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pytest.importorskip("pyarrow")
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df = pd.DataFrame(
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{
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"string": list("abc"),
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"string_with_nan": ["a", np.nan, "c"],
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"string_with_none": ["a", None, "c"],
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"bytes": [b"foo", b"bar", None],
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"int": list(range(1, 4)),
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"float": np.arange(4.0, 7.0, dtype="float64"),
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"float_with_nan": [2.0, np.nan, 3.0],
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"bool": [True, False, True],
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"bool_with_na": [True, False, None],
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"datetime": pd.date_range("20130101", periods=3),
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"datetime_with_nat": [
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pd.Timestamp("20130101"),
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pd.NaT,
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pd.Timestamp("20130103"),
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],
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}
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)
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bytes_data = df.copy().to_orc()
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result = read_orc(BytesIO(bytes_data), dtype_backend="pyarrow")
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expected = pd.DataFrame(
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{
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col: pd.arrays.ArrowExtensionArray(pa.array(df[col], from_pandas=True))
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for col in df.columns
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}
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)
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tm.assert_frame_equal(result, expected)
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def test_orc_dtype_backend_numpy_nullable():
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# GH#50503
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pytest.importorskip("pyarrow")
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df = pd.DataFrame(
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{
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"string": list("abc"),
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"string_with_nan": ["a", np.nan, "c"],
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"string_with_none": ["a", None, "c"],
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"int": list(range(1, 4)),
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"int_with_nan": pd.Series([1, pd.NA, 3], dtype="Int64"),
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"na_only": pd.Series([pd.NA, pd.NA, pd.NA], dtype="Int64"),
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"float": np.arange(4.0, 7.0, dtype="float64"),
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"float_with_nan": [2.0, np.nan, 3.0],
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"bool": [True, False, True],
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"bool_with_na": [True, False, None],
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}
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)
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bytes_data = df.copy().to_orc()
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result = read_orc(BytesIO(bytes_data), dtype_backend="numpy_nullable")
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expected = pd.DataFrame(
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{
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"string": StringArray(np.array(["a", "b", "c"], dtype=np.object_)),
|
||
|
|
"string_with_nan": StringArray(
|
||
|
|
np.array(["a", pd.NA, "c"], dtype=np.object_)
|
||
|
|
),
|
||
|
|
"string_with_none": StringArray(
|
||
|
|
np.array(["a", pd.NA, "c"], dtype=np.object_)
|
||
|
|
),
|
||
|
|
"int": pd.Series([1, 2, 3], dtype="Int64"),
|
||
|
|
"int_with_nan": pd.Series([1, pd.NA, 3], dtype="Int64"),
|
||
|
|
"na_only": pd.Series([pd.NA, pd.NA, pd.NA], dtype="Int64"),
|
||
|
|
"float": pd.Series([4.0, 5.0, 6.0], dtype="Float64"),
|
||
|
|
"float_with_nan": pd.Series([2.0, pd.NA, 3.0], dtype="Float64"),
|
||
|
|
"bool": pd.Series([True, False, True], dtype="boolean"),
|
||
|
|
"bool_with_na": pd.Series([True, False, pd.NA], dtype="boolean"),
|
||
|
|
}
|
||
|
|
)
|
||
|
|
|
||
|
|
tm.assert_frame_equal(result, expected)
|
||
|
|
|
||
|
|
|
||
|
|
def test_orc_uri_path():
|
||
|
|
expected = pd.DataFrame({"int": list(range(1, 4))})
|
||
|
|
with tm.ensure_clean("tmp.orc") as path:
|
||
|
|
expected.to_orc(path)
|
||
|
|
uri = pathlib.Path(path).as_uri()
|
||
|
|
result = read_orc(uri)
|
||
|
|
tm.assert_frame_equal(result, expected)
|
||
|
|
|
||
|
|
|
||
|
|
@pytest.mark.parametrize(
|
||
|
|
"index",
|
||
|
|
[
|
||
|
|
pd.RangeIndex(start=2, stop=5, step=1),
|
||
|
|
pd.RangeIndex(start=0, stop=3, step=1, name="non-default"),
|
||
|
|
pd.Index([1, 2, 3]),
|
||
|
|
],
|
||
|
|
)
|
||
|
|
def test_to_orc_non_default_index(index):
|
||
|
|
df = pd.DataFrame({"a": [1, 2, 3]}, index=index)
|
||
|
|
msg = (
|
||
|
|
"orc does not support serializing a non-default index|"
|
||
|
|
"orc does not serialize index meta-data"
|
||
|
|
)
|
||
|
|
with pytest.raises(ValueError, match=msg):
|
||
|
|
df.to_orc()
|
||
|
|
|
||
|
|
|
||
|
|
def test_invalid_dtype_backend():
|
||
|
|
msg = (
|
||
|
|
"dtype_backend numpy is invalid, only 'numpy_nullable' and "
|
||
|
|
"'pyarrow' are allowed."
|
||
|
|
)
|
||
|
|
df = pd.DataFrame({"int": list(range(1, 4))})
|
||
|
|
with tm.ensure_clean("tmp.orc") as path:
|
||
|
|
df.to_orc(path)
|
||
|
|
with pytest.raises(ValueError, match=msg):
|
||
|
|
read_orc(path, dtype_backend="numpy")
|
||
|
|
|
||
|
|
|
||
|
|
def test_string_inference(tmp_path):
|
||
|
|
# GH#54431
|
||
|
|
path = tmp_path / "test_string_inference.p"
|
||
|
|
df = pd.DataFrame(data={"a": ["x", "y"]})
|
||
|
|
df.to_orc(path)
|
||
|
|
with pd.option_context("future.infer_string", True):
|
||
|
|
result = read_orc(path)
|
||
|
|
expected = pd.DataFrame(
|
||
|
|
data={"a": ["x", "y"]},
|
||
|
|
dtype="string[pyarrow_numpy]",
|
||
|
|
columns=pd.Index(["a"], dtype="string[pyarrow_numpy]"),
|
||
|
|
)
|
||
|
|
tm.assert_frame_equal(result, expected)
|