""" Testing ======= General guidelines for writing good tests: - doctests always assume ``import networkx as nx`` so don't add that - prefer pytest fixtures over classes with setup methods. - use the ``@pytest.mark.parametrize`` decorator - use ``pytest.importorskip`` for numpy, scipy, pandas, and matplotlib b/c of PyPy. and add the module to the relevant entries below. """ import os import sys import warnings from importlib.metadata import entry_points import pytest import networkx def pytest_addoption(parser): parser.addoption( "--runslow", action="store_true", default=False, help="run slow tests" ) parser.addoption( "--backend", action="store", default=None, help="Run tests with a backend by auto-converting nx graphs to backend graphs", ) parser.addoption( "--fallback-to-nx", action="store_true", default=False, help="Run nx function if a backend doesn't implement a dispatchable function" " (use with --backend)", ) def pytest_configure(config): config.addinivalue_line("markers", "slow: mark test as slow to run") backend = config.getoption("--backend") if backend is None: backend = os.environ.get("NETWORKX_TEST_BACKEND") # nx-loopback backend is only available when testing backends = entry_points(name="nx-loopback", group="networkx.backends") if backends: networkx.utils.backends.backends["nx-loopback"] = next(iter(backends)) else: warnings.warn( "\n\n WARNING: Mixed NetworkX configuration! \n\n" " This environment has mixed configuration for networkx.\n" " The test object nx-loopback is not configured correctly.\n" " You should not be seeing this message.\n" " Try `pip install -e .`, or change your PYTHONPATH\n" " Make sure python finds the networkx repo you are testing\n\n" ) if backend: networkx.config["backend_priority"] = [backend] fallback_to_nx = config.getoption("--fallback-to-nx") if not fallback_to_nx: fallback_to_nx = os.environ.get("NETWORKX_FALLBACK_TO_NX") networkx.utils.backends._dispatchable._fallback_to_nx = bool(fallback_to_nx) def pytest_collection_modifyitems(config, items): # Setting this to True here allows tests to be set up before dispatching # any function call to a backend. networkx.utils.backends._dispatchable._is_testing = True if backend_priority := networkx.config["backend_priority"]: # Allow pluggable backends to add markers to tests (such as skip or xfail) # when running in auto-conversion test mode backend = networkx.utils.backends.backends[backend_priority[0]].load() if hasattr(backend, "on_start_tests"): getattr(backend, "on_start_tests")(items) if config.getoption("--runslow"): # --runslow given in cli: do not skip slow tests return skip_slow = pytest.mark.skip(reason="need --runslow option to run") for item in items: if "slow" in item.keywords: item.add_marker(skip_slow) # TODO: The warnings below need to be dealt with, but for now we silence them. @pytest.fixture(autouse=True) def set_warnings(): warnings.filterwarnings( "ignore", category=FutureWarning, message="\n\nsingle_target_shortest_path_length", ) warnings.filterwarnings( "ignore", category=FutureWarning, message="\n\nshortest_path", ) warnings.filterwarnings( "ignore", category=DeprecationWarning, message="\nforest_str is deprecated" ) warnings.filterwarnings( "ignore", category=DeprecationWarning, message="\n\nrandom_tree" ) warnings.filterwarnings( "ignore", category=DeprecationWarning, message="Edmonds has been deprecated" ) warnings.filterwarnings( "ignore", category=DeprecationWarning, message="MultiDiGraph_EdgeKey has been deprecated", ) warnings.filterwarnings( "ignore", category=DeprecationWarning, message="\n\nThe `normalized`" ) warnings.filterwarnings( "ignore", category=DeprecationWarning, message="The function `join` is deprecated", ) warnings.filterwarnings( "ignore", category=DeprecationWarning, message="\n\nstrongly_connected_components_recursive", ) warnings.filterwarnings( "ignore", category=DeprecationWarning, message="\n\nall_triplets" ) warnings.filterwarnings( "ignore", category=DeprecationWarning, message="\n\nrandom_triad" ) warnings.filterwarnings( "ignore", category=DeprecationWarning, message="minimal_d_separator" ) warnings.filterwarnings( "ignore", category=DeprecationWarning, message="d_separated" ) warnings.filterwarnings("ignore", category=DeprecationWarning, message="\n\nk_core") warnings.filterwarnings( "ignore", category=DeprecationWarning, message="\n\nk_shell" ) warnings.filterwarnings( "ignore", category=DeprecationWarning, message="\n\nk_crust" ) warnings.filterwarnings( "ignore", category=DeprecationWarning, message="\n\nk_corona" ) warnings.filterwarnings( "ignore", category=DeprecationWarning, message="\n\ntotal_spanning_tree_weight" ) warnings.filterwarnings( "ignore", category=DeprecationWarning, message=r"\n\nThe 'create=matrix'" ) @pytest.fixture(autouse=True) def add_nx(doctest_namespace): doctest_namespace["nx"] = networkx # What dependencies are installed? try: import numpy has_numpy = True except ImportError: has_numpy = False try: import scipy has_scipy = True except ImportError: has_scipy = False try: import matplotlib has_matplotlib = True except ImportError: has_matplotlib = False try: import pandas has_pandas = True except ImportError: has_pandas = False try: import pygraphviz has_pygraphviz = True except ImportError: has_pygraphviz = False try: import pydot has_pydot = True except ImportError: has_pydot = False try: import sympy has_sympy = True except ImportError: has_sympy = False # List of files that pytest should ignore collect_ignore = [] needs_numpy = [ "algorithms/approximation/traveling_salesman.py", "algorithms/centrality/current_flow_closeness.py", "algorithms/node_classification.py", "algorithms/non_randomness.py", "algorithms/shortest_paths/dense.py", "algorithms/tree/mst.py", "generators/expanders.py", "linalg/bethehessianmatrix.py", "linalg/laplacianmatrix.py", "utils/misc.py", "algorithms/centrality/laplacian.py", ] needs_scipy = [ "algorithms/approximation/traveling_salesman.py", "algorithms/assortativity/correlation.py", "algorithms/assortativity/mixing.py", "algorithms/assortativity/pairs.py", "algorithms/bipartite/matrix.py", "algorithms/bipartite/spectral.py", "algorithms/centrality/current_flow_betweenness.py", "algorithms/centrality/current_flow_betweenness_subset.py", "algorithms/centrality/eigenvector.py", "algorithms/centrality/katz.py", "algorithms/centrality/laplacian.py", "algorithms/centrality/second_order.py", "algorithms/centrality/subgraph_alg.py", "algorithms/communicability_alg.py", "algorithms/community/divisive.py", "algorithms/distance_measures.py", "algorithms/link_analysis/hits_alg.py", "algorithms/link_analysis/pagerank_alg.py", "algorithms/node_classification.py", "algorithms/similarity.py", "algorithms/tree/mst.py", "algorithms/walks.py", "convert_matrix.py", "drawing/layout.py", "drawing/nx_pylab.py", "generators/spectral_graph_forge.py", "generators/expanders.py", "linalg/algebraicconnectivity.py", "linalg/attrmatrix.py", "linalg/bethehessianmatrix.py", "linalg/graphmatrix.py", "linalg/laplacianmatrix.py", "linalg/modularitymatrix.py", "linalg/spectrum.py", "utils/rcm.py", ] needs_matplotlib = ["drawing/nx_pylab.py"] needs_pandas = ["convert_matrix.py"] needs_pygraphviz = ["drawing/nx_agraph.py"] needs_pydot = ["drawing/nx_pydot.py"] needs_sympy = ["algorithms/polynomials.py"] if not has_numpy: collect_ignore += needs_numpy if not has_scipy: collect_ignore += needs_scipy if not has_matplotlib: collect_ignore += needs_matplotlib if not has_pandas: collect_ignore += needs_pandas if not has_pygraphviz: collect_ignore += needs_pygraphviz if not has_pydot: collect_ignore += needs_pydot if not has_sympy: collect_ignore += needs_sympy