You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
290 lines
8.6 KiB
290 lines
8.6 KiB
"""
|
|
Testing
|
|
=======
|
|
|
|
General guidelines for writing good tests:
|
|
|
|
- doctests always assume ``import networkx as nx`` so don't add that
|
|
- prefer pytest fixtures over classes with setup methods.
|
|
- use the ``@pytest.mark.parametrize`` decorator
|
|
- use ``pytest.importorskip`` for numpy, scipy, pandas, and matplotlib b/c of PyPy.
|
|
and add the module to the relevant entries below.
|
|
|
|
"""
|
|
import os
|
|
import sys
|
|
import warnings
|
|
from importlib.metadata import entry_points
|
|
|
|
import pytest
|
|
|
|
import networkx
|
|
|
|
|
|
def pytest_addoption(parser):
|
|
parser.addoption(
|
|
"--runslow", action="store_true", default=False, help="run slow tests"
|
|
)
|
|
parser.addoption(
|
|
"--backend",
|
|
action="store",
|
|
default=None,
|
|
help="Run tests with a backend by auto-converting nx graphs to backend graphs",
|
|
)
|
|
parser.addoption(
|
|
"--fallback-to-nx",
|
|
action="store_true",
|
|
default=False,
|
|
help="Run nx function if a backend doesn't implement a dispatchable function"
|
|
" (use with --backend)",
|
|
)
|
|
|
|
|
|
def pytest_configure(config):
|
|
config.addinivalue_line("markers", "slow: mark test as slow to run")
|
|
backend = config.getoption("--backend")
|
|
if backend is None:
|
|
backend = os.environ.get("NETWORKX_TEST_BACKEND")
|
|
# nx-loopback backend is only available when testing
|
|
backends = entry_points(name="nx-loopback", group="networkx.backends")
|
|
if backends:
|
|
networkx.utils.backends.backends["nx-loopback"] = next(iter(backends))
|
|
else:
|
|
warnings.warn(
|
|
"\n\n WARNING: Mixed NetworkX configuration! \n\n"
|
|
" This environment has mixed configuration for networkx.\n"
|
|
" The test object nx-loopback is not configured correctly.\n"
|
|
" You should not be seeing this message.\n"
|
|
" Try `pip install -e .`, or change your PYTHONPATH\n"
|
|
" Make sure python finds the networkx repo you are testing\n\n"
|
|
)
|
|
if backend:
|
|
networkx.config["backend_priority"] = [backend]
|
|
fallback_to_nx = config.getoption("--fallback-to-nx")
|
|
if not fallback_to_nx:
|
|
fallback_to_nx = os.environ.get("NETWORKX_FALLBACK_TO_NX")
|
|
networkx.utils.backends._dispatchable._fallback_to_nx = bool(fallback_to_nx)
|
|
|
|
|
|
def pytest_collection_modifyitems(config, items):
|
|
# Setting this to True here allows tests to be set up before dispatching
|
|
# any function call to a backend.
|
|
networkx.utils.backends._dispatchable._is_testing = True
|
|
if backend_priority := networkx.config["backend_priority"]:
|
|
# Allow pluggable backends to add markers to tests (such as skip or xfail)
|
|
# when running in auto-conversion test mode
|
|
backend = networkx.utils.backends.backends[backend_priority[0]].load()
|
|
if hasattr(backend, "on_start_tests"):
|
|
getattr(backend, "on_start_tests")(items)
|
|
|
|
if config.getoption("--runslow"):
|
|
# --runslow given in cli: do not skip slow tests
|
|
return
|
|
skip_slow = pytest.mark.skip(reason="need --runslow option to run")
|
|
for item in items:
|
|
if "slow" in item.keywords:
|
|
item.add_marker(skip_slow)
|
|
|
|
|
|
# TODO: The warnings below need to be dealt with, but for now we silence them.
|
|
@pytest.fixture(autouse=True)
|
|
def set_warnings():
|
|
warnings.filterwarnings(
|
|
"ignore",
|
|
category=FutureWarning,
|
|
message="\n\nsingle_target_shortest_path_length",
|
|
)
|
|
warnings.filterwarnings(
|
|
"ignore",
|
|
category=FutureWarning,
|
|
message="\n\nshortest_path",
|
|
)
|
|
warnings.filterwarnings(
|
|
"ignore", category=DeprecationWarning, message="\nforest_str is deprecated"
|
|
)
|
|
warnings.filterwarnings(
|
|
"ignore", category=DeprecationWarning, message="\n\nrandom_tree"
|
|
)
|
|
warnings.filterwarnings(
|
|
"ignore", category=DeprecationWarning, message="Edmonds has been deprecated"
|
|
)
|
|
warnings.filterwarnings(
|
|
"ignore",
|
|
category=DeprecationWarning,
|
|
message="MultiDiGraph_EdgeKey has been deprecated",
|
|
)
|
|
warnings.filterwarnings(
|
|
"ignore", category=DeprecationWarning, message="\n\nThe `normalized`"
|
|
)
|
|
warnings.filterwarnings(
|
|
"ignore",
|
|
category=DeprecationWarning,
|
|
message="The function `join` is deprecated",
|
|
)
|
|
warnings.filterwarnings(
|
|
"ignore",
|
|
category=DeprecationWarning,
|
|
message="\n\nstrongly_connected_components_recursive",
|
|
)
|
|
warnings.filterwarnings(
|
|
"ignore", category=DeprecationWarning, message="\n\nall_triplets"
|
|
)
|
|
warnings.filterwarnings(
|
|
"ignore", category=DeprecationWarning, message="\n\nrandom_triad"
|
|
)
|
|
warnings.filterwarnings(
|
|
"ignore", category=DeprecationWarning, message="minimal_d_separator"
|
|
)
|
|
warnings.filterwarnings(
|
|
"ignore", category=DeprecationWarning, message="d_separated"
|
|
)
|
|
warnings.filterwarnings("ignore", category=DeprecationWarning, message="\n\nk_core")
|
|
warnings.filterwarnings(
|
|
"ignore", category=DeprecationWarning, message="\n\nk_shell"
|
|
)
|
|
warnings.filterwarnings(
|
|
"ignore", category=DeprecationWarning, message="\n\nk_crust"
|
|
)
|
|
warnings.filterwarnings(
|
|
"ignore", category=DeprecationWarning, message="\n\nk_corona"
|
|
)
|
|
warnings.filterwarnings(
|
|
"ignore", category=DeprecationWarning, message="\n\ntotal_spanning_tree_weight"
|
|
)
|
|
warnings.filterwarnings(
|
|
"ignore", category=DeprecationWarning, message=r"\n\nThe 'create=matrix'"
|
|
)
|
|
|
|
|
|
@pytest.fixture(autouse=True)
|
|
def add_nx(doctest_namespace):
|
|
doctest_namespace["nx"] = networkx
|
|
|
|
|
|
# What dependencies are installed?
|
|
|
|
try:
|
|
import numpy
|
|
|
|
has_numpy = True
|
|
except ImportError:
|
|
has_numpy = False
|
|
|
|
try:
|
|
import scipy
|
|
|
|
has_scipy = True
|
|
except ImportError:
|
|
has_scipy = False
|
|
|
|
try:
|
|
import matplotlib
|
|
|
|
has_matplotlib = True
|
|
except ImportError:
|
|
has_matplotlib = False
|
|
|
|
try:
|
|
import pandas
|
|
|
|
has_pandas = True
|
|
except ImportError:
|
|
has_pandas = False
|
|
|
|
try:
|
|
import pygraphviz
|
|
|
|
has_pygraphviz = True
|
|
except ImportError:
|
|
has_pygraphviz = False
|
|
|
|
try:
|
|
import pydot
|
|
|
|
has_pydot = True
|
|
except ImportError:
|
|
has_pydot = False
|
|
|
|
try:
|
|
import sympy
|
|
|
|
has_sympy = True
|
|
except ImportError:
|
|
has_sympy = False
|
|
|
|
|
|
# List of files that pytest should ignore
|
|
|
|
collect_ignore = []
|
|
|
|
needs_numpy = [
|
|
"algorithms/approximation/traveling_salesman.py",
|
|
"algorithms/centrality/current_flow_closeness.py",
|
|
"algorithms/node_classification.py",
|
|
"algorithms/non_randomness.py",
|
|
"algorithms/shortest_paths/dense.py",
|
|
"algorithms/tree/mst.py",
|
|
"generators/expanders.py",
|
|
"linalg/bethehessianmatrix.py",
|
|
"linalg/laplacianmatrix.py",
|
|
"utils/misc.py",
|
|
"algorithms/centrality/laplacian.py",
|
|
]
|
|
needs_scipy = [
|
|
"algorithms/approximation/traveling_salesman.py",
|
|
"algorithms/assortativity/correlation.py",
|
|
"algorithms/assortativity/mixing.py",
|
|
"algorithms/assortativity/pairs.py",
|
|
"algorithms/bipartite/matrix.py",
|
|
"algorithms/bipartite/spectral.py",
|
|
"algorithms/centrality/current_flow_betweenness.py",
|
|
"algorithms/centrality/current_flow_betweenness_subset.py",
|
|
"algorithms/centrality/eigenvector.py",
|
|
"algorithms/centrality/katz.py",
|
|
"algorithms/centrality/laplacian.py",
|
|
"algorithms/centrality/second_order.py",
|
|
"algorithms/centrality/subgraph_alg.py",
|
|
"algorithms/communicability_alg.py",
|
|
"algorithms/community/divisive.py",
|
|
"algorithms/distance_measures.py",
|
|
"algorithms/link_analysis/hits_alg.py",
|
|
"algorithms/link_analysis/pagerank_alg.py",
|
|
"algorithms/node_classification.py",
|
|
"algorithms/similarity.py",
|
|
"algorithms/tree/mst.py",
|
|
"algorithms/walks.py",
|
|
"convert_matrix.py",
|
|
"drawing/layout.py",
|
|
"drawing/nx_pylab.py",
|
|
"generators/spectral_graph_forge.py",
|
|
"generators/expanders.py",
|
|
"linalg/algebraicconnectivity.py",
|
|
"linalg/attrmatrix.py",
|
|
"linalg/bethehessianmatrix.py",
|
|
"linalg/graphmatrix.py",
|
|
"linalg/laplacianmatrix.py",
|
|
"linalg/modularitymatrix.py",
|
|
"linalg/spectrum.py",
|
|
"utils/rcm.py",
|
|
]
|
|
needs_matplotlib = ["drawing/nx_pylab.py"]
|
|
needs_pandas = ["convert_matrix.py"]
|
|
needs_pygraphviz = ["drawing/nx_agraph.py"]
|
|
needs_pydot = ["drawing/nx_pydot.py"]
|
|
needs_sympy = ["algorithms/polynomials.py"]
|
|
|
|
if not has_numpy:
|
|
collect_ignore += needs_numpy
|
|
if not has_scipy:
|
|
collect_ignore += needs_scipy
|
|
if not has_matplotlib:
|
|
collect_ignore += needs_matplotlib
|
|
if not has_pandas:
|
|
collect_ignore += needs_pandas
|
|
if not has_pygraphviz:
|
|
collect_ignore += needs_pygraphviz
|
|
if not has_pydot:
|
|
collect_ignore += needs_pydot
|
|
if not has_sympy:
|
|
collect_ignore += needs_sympy
|