"""
Setup script for EMCAD.
"""

from setuptools import setup, find_packages
import os

# Read the README file
with open("README.md", "r", encoding="utf-8") as fh:
    long_description = fh.read()

# Read requirements
with open("requirements.txt", "r", encoding="utf-8") as fh:
    requirements = [line.strip() for line in fh if line.strip() and not line.startswith("#")]

setup(
    name="emcad",
    version="1.0.0",
    author="Md Mostafijur Rahman, Mustafa Munir, Radu Marculescu",
    author_email="mostafij.rahman@utexas.edu",
    description="Efficient Multi-scale Convolutional Attention Decoding for Medical Image Segmentation",
    long_description=long_description,
    long_description_content_type="text/markdown",
    url="https://github.com/SLDGroup/EMCAD",
    project_urls={
        "Bug Tracker": "https://github.com/SLDGroup/EMCAD/issues",
        "Documentation": "https://github.com/SLDGroup/EMCAD/docs",
        "Source Code": "https://github.com/SLDGroup/EMCAD",
    },
    packages=find_packages(where="src"),
    package_dir={"": "src"},
    classifiers=[
        "Development Status :: 4 - Beta",
        "Intended Audience :: Science/Research",
        "Topic :: Scientific/Engineering :: Artificial Intelligence",
        "Topic :: Scientific/Engineering :: Medical Science Apps.",
        "License :: OSI Approved :: MIT License",
        "Programming Language :: Python :: 3",
        "Programming Language :: Python :: 3.8",
        "Programming Language :: Python :: 3.9",
        "Programming Language :: Python :: 3.10",
        "Operating System :: OS Independent",
    ],
    python_requires=">=3.8",
    install_requires=requirements,
    extras_require={
        "dev": [
            "pytest>=6.0",
            "pytest-cov>=2.0",
            "black>=21.0",
            "isort>=5.0",
            "flake8>=3.8",
            "mypy>=0.800",
        ],
        "docs": [
            "sphinx>=4.0",
            "sphinx-rtd-theme>=0.5",
            "sphinx-autodoc-typehints>=1.12",
        ],
    },
    entry_points={
        "console_scripts": [
            "emcad-train=emcad.scripts.train:main",
            "emcad-test=emcad.scripts.test:main",
        ],
    },
    include_package_data=True,
    package_data={
        "emcad": ["configs/*.yaml"],
    },
)