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run parallel test success

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master
xieguigang 7 years ago
parent f2720796ab
commit a17f6ef42a
6 changed files with 205 additions and 8 deletions
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33
ComputingServices/ComputingServices.vbproj
Unescape View File

@ -218,6 +218,39 @@
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105
Distribute_computing/ComputingServices.sln
Unescape View File

@ -79,6 +79,9 @@ Global
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{3291389C-EA87-4B33-A9A5-65A2D60BA3E2}.node-debug|x64.Build.0 = node-debug|x64
{3291389C-EA87-4B33-A9A5-65A2D60BA3E2}.node-debug|x86.ActiveCfg = node-debug|x86
{3291389C-EA87-4B33-A9A5-65A2D60BA3E2}.node-debug|x86.Build.0 = node-debug|x86
{3291389C-EA87-4B33-A9A5-65A2D60BA3E2}.ProteoWizard.d|Any CPU.ActiveCfg = Publish|Any CPU
{3291389C-EA87-4B33-A9A5-65A2D60BA3E2}.ProteoWizard.d|Any CPU.Build.0 = Publish|Any CPU
{3291389C-EA87-4B33-A9A5-65A2D60BA3E2}.ProteoWizard.d|x64.ActiveCfg = Publish|x64
@ -1656,6 +1737,12 @@ Global
{076315EE-B598-40DC-9280-C71CDF9B6A48}.mysqli_X64_release|x64.Build.0 = Biodeep_UNIX_x64|x64
{076315EE-B598-40DC-9280-C71CDF9B6A48}.mysqli_X64_release|x86.ActiveCfg = Biodeep_UNIX_x64|x86
{076315EE-B598-40DC-9280-C71CDF9B6A48}.mysqli_X64_release|x86.Build.0 = Biodeep_UNIX_x64|x86
{076315EE-B598-40DC-9280-C71CDF9B6A48}.node-debug|Any CPU.ActiveCfg = node-debug|Any CPU
{076315EE-B598-40DC-9280-C71CDF9B6A48}.node-debug|Any CPU.Build.0 = node-debug|Any CPU
{076315EE-B598-40DC-9280-C71CDF9B6A48}.node-debug|x64.ActiveCfg = node-debug|x64
{076315EE-B598-40DC-9280-C71CDF9B6A48}.node-debug|x64.Build.0 = node-debug|x64
{076315EE-B598-40DC-9280-C71CDF9B6A48}.node-debug|x86.ActiveCfg = node-debug|x86
{076315EE-B598-40DC-9280-C71CDF9B6A48}.node-debug|x86.Build.0 = node-debug|x86
{076315EE-B598-40DC-9280-C71CDF9B6A48}.ProteoWizard.d|Any CPU.ActiveCfg = Publish|Any CPU
{076315EE-B598-40DC-9280-C71CDF9B6A48}.ProteoWizard.d|Any CPU.Build.0 = Publish|Any CPU
{076315EE-B598-40DC-9280-C71CDF9B6A48}.ProteoWizard.d|x64.ActiveCfg = Publish|x64
@ -1770,6 +1857,12 @@ Global
{CCBF36AB-506D-48A2-9150-A3762D4120EC}.mysqli_X64_release|x64.Build.0 = Publish|x64
{CCBF36AB-506D-48A2-9150-A3762D4120EC}.mysqli_X64_release|x86.ActiveCfg = Publish|Any CPU
{CCBF36AB-506D-48A2-9150-A3762D4120EC}.mysqli_X64_release|x86.Build.0 = Publish|Any CPU
{CCBF36AB-506D-48A2-9150-A3762D4120EC}.node-debug|Any CPU.ActiveCfg = node-debug|Any CPU
{CCBF36AB-506D-48A2-9150-A3762D4120EC}.node-debug|Any CPU.Build.0 = node-debug|Any CPU
{CCBF36AB-506D-48A2-9150-A3762D4120EC}.node-debug|x64.ActiveCfg = node-debug|x64
{CCBF36AB-506D-48A2-9150-A3762D4120EC}.node-debug|x64.Build.0 = node-debug|x64
{CCBF36AB-506D-48A2-9150-A3762D4120EC}.node-debug|x86.ActiveCfg = node-debug|Any CPU
{CCBF36AB-506D-48A2-9150-A3762D4120EC}.node-debug|x86.Build.0 = node-debug|Any CPU
{CCBF36AB-506D-48A2-9150-A3762D4120EC}.ProteoWizard.d|Any CPU.ActiveCfg = Publish|Any CPU
{CCBF36AB-506D-48A2-9150-A3762D4120EC}.ProteoWizard.d|Any CPU.Build.0 = Publish|Any CPU
{CCBF36AB-506D-48A2-9150-A3762D4120EC}.ProteoWizard.d|x64.ActiveCfg = Publish|x64
@ -1884,6 +1977,12 @@ Global
{F045B4BF-7E34-4E31-9D44-E3D4C7DD3098}.mysqli_X64_release|x64.Build.0 = Release|x64
{F045B4BF-7E34-4E31-9D44-E3D4C7DD3098}.mysqli_X64_release|x86.ActiveCfg = Release|Any CPU
{F045B4BF-7E34-4E31-9D44-E3D4C7DD3098}.mysqli_X64_release|x86.Build.0 = Release|Any CPU
{F045B4BF-7E34-4E31-9D44-E3D4C7DD3098}.node-debug|Any CPU.ActiveCfg = node-debug|Any CPU
{F045B4BF-7E34-4E31-9D44-E3D4C7DD3098}.node-debug|Any CPU.Build.0 = node-debug|Any CPU
{F045B4BF-7E34-4E31-9D44-E3D4C7DD3098}.node-debug|x64.ActiveCfg = node-debug|x64
{F045B4BF-7E34-4E31-9D44-E3D4C7DD3098}.node-debug|x64.Build.0 = node-debug|x64
{F045B4BF-7E34-4E31-9D44-E3D4C7DD3098}.node-debug|x86.ActiveCfg = node-debug|Any CPU
{F045B4BF-7E34-4E31-9D44-E3D4C7DD3098}.node-debug|x86.Build.0 = node-debug|Any CPU
{F045B4BF-7E34-4E31-9D44-E3D4C7DD3098}.ProteoWizard.d|Any CPU.ActiveCfg = Release|Any CPU
{F045B4BF-7E34-4E31-9D44-E3D4C7DD3098}.ProteoWizard.d|Any CPU.Build.0 = Release|Any CPU
{F045B4BF-7E34-4E31-9D44-E3D4C7DD3098}.ProteoWizard.d|x64.ActiveCfg = Release|x64
@ -1998,6 +2097,12 @@ Global
{1F9B3E34-9470-4E57-86EA-350D5179C720}.mysqli_X64_release|x64.Build.0 = Publish|x64
{1F9B3E34-9470-4E57-86EA-350D5179C720}.mysqli_X64_release|x86.ActiveCfg = Publish|Any CPU
{1F9B3E34-9470-4E57-86EA-350D5179C720}.mysqli_X64_release|x86.Build.0 = Publish|Any CPU
{1F9B3E34-9470-4E57-86EA-350D5179C720}.node-debug|Any CPU.ActiveCfg = node-debug|Any CPU
{1F9B3E34-9470-4E57-86EA-350D5179C720}.node-debug|Any CPU.Build.0 = node-debug|Any CPU
{1F9B3E34-9470-4E57-86EA-350D5179C720}.node-debug|x64.ActiveCfg = node-debug|x64
{1F9B3E34-9470-4E57-86EA-350D5179C720}.node-debug|x64.Build.0 = node-debug|x64
{1F9B3E34-9470-4E57-86EA-350D5179C720}.node-debug|x86.ActiveCfg = node-debug|Any CPU
{1F9B3E34-9470-4E57-86EA-350D5179C720}.node-debug|x86.Build.0 = node-debug|Any CPU
{1F9B3E34-9470-4E57-86EA-350D5179C720}.ProteoWizard.d|Any CPU.ActiveCfg = Publish|Any CPU
{1F9B3E34-9470-4E57-86EA-350D5179C720}.ProteoWizard.d|Any CPU.Build.0 = Publish|Any CPU
{1F9B3E34-9470-4E57-86EA-350D5179C720}.ProteoWizard.d|x64.ActiveCfg = Publish|x64

22
Distribute_computing/GridDynamics_plugins/CalculateFitness.vb
Unescape View File

@ -9,6 +9,7 @@ Imports Microsoft.VisualBasic.MachineLearning.Darwinism.NonlinearGridTopology
Imports Microsoft.VisualBasic.Net.Http
Imports Microsoft.VisualBasic.Parallel.Tasks
Imports Microsoft.VisualBasic.Serialization.JSON
Imports Microsoft.VisualBasic.Text
Imports sciBASIC.ComputingServices.TaskHost
Public Structure SlaveTask
@ -80,14 +81,25 @@ Public Module CalculateFitness
<Extension>
Private Function writeMemory(Of T)(dataset As T) As String
Dim ref$ = App.GetNextUniqueName($"memory://GA_dataset/{App.PID}_")
Dim json As String = dataset.GetJson
Dim jsonBytes As Byte() = Encodings.UTF8WithoutBOM _
.CodePage _
.GetBytes(json)
Using writer As New StreamWriter(CommandLine.OpenForWrite(ref))
Call writer.WriteLine(dataset.GetJson)
Using writer = CommandLine.OpenForWrite(ref, size:=jsonBytes.Length)
Call writer.Write(jsonBytes, Scan0, jsonBytes.Length)
End Using
Return ref
End Function
Private Function readJSON(Of T)(file As String) As T
Dim jsonStr$ = New StreamReader(CommandLine.OpenForRead(file)).ReadToEnd.Replace(ASCII.NUL, "")
Dim obj As T = jsonStr.LoadJSON(Of T)
Return obj
End Function
''' <summary>
''' 这个函数输入的两个参数都是内存文件的引用位置
''' </summary>
@ -95,10 +107,8 @@ Public Module CalculateFitness
''' <param name="trainingSet$"></param>
''' <returns></returns>
Public Function SlaveProcess(genomes$, trainingSet$) As NamedValue(Of Double)()
Dim grids As GridMatrix() = New StreamReader(CommandLine.OpenForRead(genomes)).ReadToEnd.LoadJSON(Of GridMatrix())
Dim trainingData = New StreamReader(CommandLine.OpenForRead(trainingSet)) _
.ReadToEnd _
.LoadJSON(Of NamedValue(Of Double())()) _
Dim grids As GridMatrix() = readJSON(Of GridMatrix())(genomes)
Dim trainingData = readJSON(Of NamedValue(Of Double())())(trainingSet) _
.Select(Function(d)
Return New TrainingSet With {
.targetID = d.Name,

22
Distribute_computing/GridDynamics_plugins/GridDynamics_plugins.vbproj
Unescape View File

@ -86,6 +86,28 @@
<PlatformTarget>x64</PlatformTarget>
<CodeAnalysisRuleSet>MinimumRecommendedRules.ruleset</CodeAnalysisRuleSet>
</PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)' == 'node-debug|AnyCPU'">
<DebugSymbols>true</DebugSymbols>
<DefineDebug>true</DefineDebug>
<DefineTrace>true</DefineTrace>
<OutputPath>bin\node-debug\</OutputPath>
<DocumentationFile>GridDynamics_plugins.xml</DocumentationFile>
<NoWarn>42016,41999,42017,42018,42019,42032,42036,42020,42021,42022</NoWarn>
<DebugType>full</DebugType>
<PlatformTarget>AnyCPU</PlatformTarget>
<CodeAnalysisRuleSet>MinimumRecommendedRules.ruleset</CodeAnalysisRuleSet>
</PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)' == 'node-debug|x64'">
<DebugSymbols>true</DebugSymbols>
<DefineDebug>true</DefineDebug>
<DefineTrace>true</DefineTrace>
<OutputPath>..\..\build\node\</OutputPath>
<DocumentationFile>GridDynamics_plugins.xml</DocumentationFile>
<NoWarn>42016,41999,42017,42018,42019,42032,42036,42020,42021,42022</NoWarn>
<DebugType>full</DebugType>
<PlatformTarget>x64</PlatformTarget>
<CodeAnalysisRuleSet>MinimumRecommendedRules.ruleset</CodeAnalysisRuleSet>
</PropertyGroup>
<ItemGroup>
<Reference Include="System" />
<Reference Include="System.Data" />

7
Distribute_computing/thinking/CLI.vb
Unescape View File

@ -4,6 +4,7 @@ Imports Microsoft.VisualBasic.CommandLine
Imports Microsoft.VisualBasic.CommandLine.InteropService.SharedORM
Imports Microsoft.VisualBasic.CommandLine.Reflection
Imports Microsoft.VisualBasic.Serialization.JSON
Imports Microsoft.VisualBasic.Text
Imports sciBASIC.ComputingServices
Imports sciBASIC.ComputingServices.TaskHost
@ -38,9 +39,11 @@ Imports sciBASIC.ComputingServices.TaskHost
Dim invokeInfo As InvokeInfo = endpointJSON.LoadJSON(Of InvokeInfo)
Dim result As Rtvl = RemoteCall.Invoke(invokeInfo)
Dim resultJSON = result.GetJson
Dim jsonBytes As Byte() = Encodings.UTF8WithoutBOM.CodePage.GetBytes(resultJSON)
Using output As StreamWriter = args.OpenStreamOutput("/out")
Call output.WriteLine(result)
Using output As StreamWriter = args.OpenStreamOutput("/out", size:=jsonBytes.Length)
Call output.BaseStream.Write(jsonBytes, Scan0, jsonBytes.Length)
End Using
Return 0

24
Distribute_computing/thinking/thinking.vbproj
Unescape View File

@ -94,6 +94,30 @@
<CodeAnalysisRuleSet>MinimumRecommendedRules.ruleset</CodeAnalysisRuleSet>
<Prefer32Bit>true</Prefer32Bit>
</PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)' == 'node-debug|AnyCPU'">
<DebugSymbols>true</DebugSymbols>
<DefineDebug>true</DefineDebug>
<DefineTrace>true</DefineTrace>
<OutputPath>bin\node-debug\</OutputPath>
<DocumentationFile>thinking.xml</DocumentationFile>
<NoWarn>42016,41999,42017,42018,42019,42032,42036,42020,42021,42022</NoWarn>
<DebugType>full</DebugType>
<PlatformTarget>AnyCPU</PlatformTarget>
<CodeAnalysisRuleSet>MinimumRecommendedRules.ruleset</CodeAnalysisRuleSet>
<Prefer32Bit>true</Prefer32Bit>
</PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)' == 'node-debug|x64'">
<DebugSymbols>true</DebugSymbols>
<DefineDebug>true</DefineDebug>
<DefineTrace>true</DefineTrace>
<OutputPath>..\..\build\node\</OutputPath>
<DocumentationFile>thinking.xml</DocumentationFile>
<NoWarn>42016,41999,42017,42018,42019,42032,42036,42020,42021,42022</NoWarn>
<DebugType>full</DebugType>
<PlatformTarget>x64</PlatformTarget>
<CodeAnalysisRuleSet>MinimumRecommendedRules.ruleset</CodeAnalysisRuleSet>
<Prefer32Bit>true</Prefer32Bit>
</PropertyGroup>
<ItemGroup>
<Reference Include="System" />
<Reference Include="System.Data" />

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