diff --git a/CloudKit/Centos/Centos.vbproj b/CloudKit/Centos/Centos.vbproj index 70cdb80..d3263b8 100644 --- a/CloudKit/Centos/Centos.vbproj +++ b/CloudKit/Centos/Centos.vbproj @@ -388,6 +388,7 @@ + diff --git a/CloudKit/Centos/SSH.vb b/CloudKit/Centos/SSH.vb new file mode 100644 index 0000000..1677173 --- /dev/null +++ b/CloudKit/Centos/SSH.vb @@ -0,0 +1,6 @@ +''' +''' this works on linux system via ssh command from bash +''' +Public Class SSH + +End Class diff --git a/Distribute_computing/HPC.sln b/Distribute_computing/HPC.sln index 49cefae..60c2fa2 100644 --- a/Distribute_computing/HPC.sln +++ b/Distribute_computing/HPC.sln @@ -23,6 +23,14 @@ Project("{F184B08F-C81C-45F6-A57F-5ABD9991F28F}") = "HPC_cluster", "HPC_cluster\ EndProject Project("{F184B08F-C81C-45F6-A57F-5ABD9991F28F}") = "Taskhost.d", "Taskhost.d\Taskhost.d.vbproj", "{D7350955-C7C6-4397-B21C-873EDECFAD82}" EndProject +Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "UNIX", "UNIX", "{2E617C2B-5CC0-4DCC-A16D-15875188E082}" +EndProject +Project("{F184B08F-C81C-45F6-A57F-5ABD9991F28F}") = "Centos", "..\CloudKit\Centos\Centos.vbproj", "{04F7D21B-53E8-4107-A5E0-D28E3F70EFDE}" +EndProject +Project("{F184B08F-C81C-45F6-A57F-5ABD9991F28F}") = "Docker", "..\CloudKit\Docker\Docker.vbproj", "{B028826A-E615-4F26-B192-B9B0A997696A}" +EndProject +Project("{F184B08F-C81C-45F6-A57F-5ABD9991F28F}") = "R", "..\..\..\R-sharp\R#\R.vbproj", "{0C2EB77C-39F2-460D-A3F8-CE905F867637}" +EndProject Global GlobalSection(SharedMSBuildProjectFiles) = preSolution ..\..\sciBASIC#\www\Microsoft.VisualBasic.NETProtocol\TcpRequest\TcpRequest.projitems*{a60240d1-e78b-4b96-85e3-45256571c2cb}*SharedItemsImports = 4 @@ -1713,6 +1721,600 @@ Global {D7350955-C7C6-4397-B21C-873EDECFAD82}.Yilia-Release_x64|x64.Build.0 = Release|x64 {D7350955-C7C6-4397-B21C-873EDECFAD82}.Yilia-Release_x64|x86.ActiveCfg = Release|Any CPU {D7350955-C7C6-4397-B21C-873EDECFAD82}.Yilia-Release_x64|x86.Build.0 = Release|Any CPU 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{B028826A-E615-4F26-B192-B9B0A997696A}.Release|x64.ActiveCfg = Release|x64 + {B028826A-E615-4F26-B192-B9B0A997696A}.Release|x64.Build.0 = Release|x64 + {B028826A-E615-4F26-B192-B9B0A997696A}.Release|x86.ActiveCfg = Release|x86 + {B028826A-E615-4F26-B192-B9B0A997696A}.Release|x86.Build.0 = Release|x86 + {B028826A-E615-4F26-B192-B9B0A997696A}.Rsharp_app_release|Any CPU.ActiveCfg = Rsharp_app_release|Any CPU + {B028826A-E615-4F26-B192-B9B0A997696A}.Rsharp_app_release|Any CPU.Build.0 = Rsharp_app_release|Any CPU + {B028826A-E615-4F26-B192-B9B0A997696A}.Rsharp_app_release|x64.ActiveCfg = Rsharp_app_release|x64 + {B028826A-E615-4F26-B192-B9B0A997696A}.Rsharp_app_release|x64.Build.0 = Rsharp_app_release|x64 + {B028826A-E615-4F26-B192-B9B0A997696A}.Rsharp_app_release|x86.ActiveCfg = Rsharp_app_release|x86 + {B028826A-E615-4F26-B192-B9B0A997696A}.Rsharp_app_release|x86.Build.0 = Rsharp_app_release|x86 + {B028826A-E615-4F26-B192-B9B0A997696A}.RsharpDev|Any CPU.ActiveCfg = RsharpDev|Any CPU + 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{B028826A-E615-4F26-B192-B9B0A997696A}.Surveillance-of-infectious-diseases|Any CPU.ActiveCfg = Debug|Any CPU + {B028826A-E615-4F26-B192-B9B0A997696A}.Surveillance-of-infectious-diseases|Any CPU.Build.0 = Debug|Any CPU + {B028826A-E615-4F26-B192-B9B0A997696A}.Surveillance-of-infectious-diseases|x64.ActiveCfg = Debug|x64 + {B028826A-E615-4F26-B192-B9B0A997696A}.Surveillance-of-infectious-diseases|x64.Build.0 = Debug|x64 + {B028826A-E615-4F26-B192-B9B0A997696A}.Surveillance-of-infectious-diseases|x86.ActiveCfg = Debug|x86 + {B028826A-E615-4F26-B192-B9B0A997696A}.Surveillance-of-infectious-diseases|x86.Build.0 = Debug|x86 + {B028826A-E615-4F26-B192-B9B0A997696A}.test|Any CPU.ActiveCfg = Debug|Any CPU + {B028826A-E615-4F26-B192-B9B0A997696A}.test|Any CPU.Build.0 = Debug|Any CPU + {B028826A-E615-4F26-B192-B9B0A997696A}.test|x64.ActiveCfg = Debug|x64 + {B028826A-E615-4F26-B192-B9B0A997696A}.test|x64.Build.0 = Debug|x64 + {B028826A-E615-4F26-B192-B9B0A997696A}.test|x86.ActiveCfg = Debug|x86 + 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{B028826A-E615-4F26-B192-B9B0A997696A}.WebAssembly|x86.Build.0 = Debug|x86 + {B028826A-E615-4F26-B192-B9B0A997696A}.Yilia-Release_x64|Any CPU.ActiveCfg = Release|Any CPU + {B028826A-E615-4F26-B192-B9B0A997696A}.Yilia-Release_x64|Any CPU.Build.0 = Release|Any CPU + {B028826A-E615-4F26-B192-B9B0A997696A}.Yilia-Release_x64|x64.ActiveCfg = Release|x64 + {B028826A-E615-4F26-B192-B9B0A997696A}.Yilia-Release_x64|x64.Build.0 = Release|x64 + {B028826A-E615-4F26-B192-B9B0A997696A}.Yilia-Release_x64|x86.ActiveCfg = Release|x86 + {B028826A-E615-4F26-B192-B9B0A997696A}.Yilia-Release_x64|x86.Build.0 = Release|x86 + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.BioDeep_database|Any CPU.ActiveCfg = BioDeep_database|Any CPU + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.BioDeep_database|Any CPU.Build.0 = BioDeep_database|Any CPU + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.BioDeep_database|x64.ActiveCfg = BioDeep_database|x64 + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.BioDeep_database|x64.Build.0 = BioDeep_database|x64 + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.BioDeep_database|x86.ActiveCfg = BioDeep_database|x86 + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.BioDeep_database|x86.Build.0 = BioDeep_database|x86 + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.Biodeep_UNIX_x64|Any CPU.ActiveCfg = Biodeep_UNIX_x64|Any CPU + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.Biodeep_UNIX_x64|Any CPU.Build.0 = Biodeep_UNIX_x64|Any CPU + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.Biodeep_UNIX_x64|x64.ActiveCfg = Biodeep_UNIX_x64|x64 + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.Biodeep_UNIX_x64|x64.Build.0 = Biodeep_UNIX_x64|x64 + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.Biodeep_UNIX_x64|x86.ActiveCfg = Biodeep_UNIX_x64|x86 + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.Biodeep_UNIX_x64|x86.Build.0 = Biodeep_UNIX_x64|x86 + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.Biodeep|Any CPU.ActiveCfg = Biodeep|Any CPU + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.Biodeep|Any CPU.Build.0 = Biodeep|Any CPU + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.Biodeep|x64.ActiveCfg = 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{0C2EB77C-39F2-460D-A3F8-CE905F867637}.Yilia-Release_x64|Any CPU.ActiveCfg = Release|Any CPU + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.Yilia-Release_x64|Any CPU.Build.0 = Release|Any CPU + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.Yilia-Release_x64|x64.ActiveCfg = Release|x64 + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.Yilia-Release_x64|x64.Build.0 = Release|x64 + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.Yilia-Release_x64|x86.ActiveCfg = Release|x86 + {0C2EB77C-39F2-460D-A3F8-CE905F867637}.Yilia-Release_x64|x86.Build.0 = Release|x86 EndGlobalSection GlobalSection(SolutionProperties) = preSolution HideSolutionNode = FALSE @@ -1724,6 +2326,10 @@ Global {C473D2D3-65B3-0220-32A8-1E0687D9AE6B} = {D6C82A98-3ADA-40BB-BCB9-3C11EF8323FC} {487D7C92-D05A-4908-BF81-E6BABA0BF592} = {D6C82A98-3ADA-40BB-BCB9-3C11EF8323FC} {D6C82A98-3ADA-40BB-BCB9-3C11EF8323FC} = {2CE83072-F221-409C-AB3B-51BC9560826C} + {2E617C2B-5CC0-4DCC-A16D-15875188E082} = {2CE83072-F221-409C-AB3B-51BC9560826C} + {04F7D21B-53E8-4107-A5E0-D28E3F70EFDE} = {2E617C2B-5CC0-4DCC-A16D-15875188E082} + {B028826A-E615-4F26-B192-B9B0A997696A} = {2E617C2B-5CC0-4DCC-A16D-15875188E082} + {0C2EB77C-39F2-460D-A3F8-CE905F867637} = {2E617C2B-5CC0-4DCC-A16D-15875188E082} EndGlobalSection GlobalSection(ExtensibilityGlobals) = postSolution SolutionGuid = {009C3C70-845B-4F47-8102-60F213B66011} diff --git a/Distribute_computing/HPC_cluster/Cluster.vb b/Distribute_computing/HPC_cluster/Cluster.vb index 966ba1e..4c19205 100644 --- a/Distribute_computing/HPC_cluster/Cluster.vb +++ b/Distribute_computing/HPC_cluster/Cluster.vb @@ -1,4 +1,5 @@ Imports System.Reflection +Imports HPC_cluster.CLI Imports Microsoft.VisualBasic.Net ''' @@ -10,13 +11,16 @@ Imports Microsoft.VisualBasic.Net ''' 之间发生大量数据通讯的计算作业，比如一个节点的中间结果或影响到其它节点计算结果的情况。 ''' ''' -''' This module only works on Linux server +''' This module only works on Linux server. +''' +''' 在这里假设每一个集群节点中的环境都是一致的 ''' Public Class Cluster ReadOnly remote As IPEndPoint ReadOnly userName As String ReadOnly imageName As String + ReadOnly localhost As String ''' ''' create a helper module for deploy environment via ``ssh`` and ``cluster node share storage``. @@ -28,29 +32,24 @@ Public Class Cluster Me.remote = remote Me.userName = userName Me.imageName = imageName + Me.localhost = WebServiceUtils.LocalIPAddress End Sub - ''' - ''' - ''' - Public Sub Deploy() - Dim deployBase As String = App.GetVariable("sockets") - Dim appBase As String = App.HOME.GetDirectoryFullPath + Public Function RunTask(master As Integer) + Dim taskHost As Taskhost_d = Taskhost_d.FromEnvironment(App.HOME) + Dim socketStream As String = App.GetVariable("sockets") - If deployBase.StringEmpty Then + If socketStream.StringEmpty Then Throw New InvalidOperationException($"you should set variable 'sockets' to a location on your clusters' share storage at first!") - Else - deployBase = $"{deployBase}/.deploy/" End If - For Each assembly As Assembly In AppDomain.CurrentDomain.GetAssemblies - Dim dllFile As String = assembly.Location - Dim dllBase As String = dllFile.ParentPath.GetDirectoryFullPath - Dim relative As String = dllBase.Replace(appBase, "") & "/" & dllFile.FileName + Dim cli As String = taskHost.GetParallelCommandLine( + master:=remote.port, + host:=localhost, + socket:=socketStream, + imagename:=imageName + ) - If InStr(dllBase, appBase, CompareMethod.Text) > 0 Then - Call dllFile.FileCopy($"{deployBase}/{relative}") - End If - Next - End Sub + + End Function End Class diff --git a/Distribute_computing/HPC_cluster/HPC_cluster.vbproj b/Distribute_computing/HPC_cluster/HPC_cluster.vbproj index f005593..4076aea 100644 --- a/Distribute_computing/HPC_cluster/HPC_cluster.vbproj +++ b/Distribute_computing/HPC_cluster/HPC_cluster.vbproj @@ -124,6 +124,10 @@ + + {0c2eb77c-39f2-460d-a3f8-ce905f867637} + R + {487d7c92-d05a-4908-bf81-e6baba0bf592} BinaryData @@ -144,6 +148,14 @@ {a60240d1-e78b-4b96-85e3-45256571c2cb} Microsoft.VisualBasic.Network + + {04f7d21b-53e8-4107-a5e0-d28e3f70efde} + Centos + + + {b028826a-e615-4f26-b192-b9b0a997696a} + Docker + {085171ca-6a65-494c-9b4a-477d35bcbc90} Parallel