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#################
## Eclipse
#################
.project
.metadata
bin/
tmp/
work/
*.DS_Store
*.tmp
*.bak
*.swp
*~.nib
local.properties
.classpath
.tomcatplugin
.settings/
/target
src/main/webapp/WEB-INF/classes
src/main/webapp/WEB-INF/lib
src/main/webapp/.\#webclasspath
src/main/webapp/resources/spyral/node_modules
src/main/resources/oath.properties
/.pydevproject
.vscode/

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GNU GENERAL PUBLIC LICENSE
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parts of the General Public License. Of course, your program's commands
might be different; for a GUI interface, you would use an "about box".
You should also get your employer (if you work as a programmer) or school,
if any, to sign a "copyright disclaimer" for the program, if necessary.
For more information on this, and how to apply and follow the GNU GPL, see
<http://www.gnu.org/licenses/>.
The GNU General Public License does not permit incorporating your program
into proprietary programs. If your program is a subroutine library, you
may consider it more useful to permit linking proprietary applications with
the library. If this is what you want to do, use the GNU Lesser General
Public License instead of this License. But first, please read
<http://www.gnu.org/philosophy/why-not-lgpl.html>.

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src/Voyant-master/README.md
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#### With the passing of Stéfan Sinclair, this repository has been archived. ####
#### Please see [voyanttools/Voyant](https://github.com/voyanttools/Voyant) for future development. ####
Voyant Tools
======
Voyant Tools is a web-based text analysis, reading and visualization environment. Developed by a small team of digital humanities scholars led by [Stéfan Sinclair ](http://stefansinclair.name/) and [Geoffrey Rockwell](http://geoffreyrockwell.com/), Voyant Tools is designed for a very wide range of applications and users, from students to researchers and journalists to market analysts. It strives to balance user-friendliness with a range of analytic and interpretive functions.
# Features
Some of the important features of Voyant Tools include:
* importing documents in various formats (plain text, HTML, XML, PDF, RTF, MS Word, ODF, etc.)
* several tools for studying term frequencies and distributions within documents and within a collection of documents (a corpus)
* a full-text reader that support very large texts and includes interactive features
* interaction between the the tools that facilitates navigation and exploration at diffent scales (from "close reading" to "distant reading")
* a mechanism for bookmarking and sharing instances of Voyant Tools (specific texts and tools) through persistent URLs
* access to a [hosted version of Voyant Tools](http://Voyant-tools.org/) or a [downloadable standalone version](http://github.com/sgsinclair/VoyantServer)
* Voyant Tools is free and open source (GPLv3)
# Documentation
The GitHub-hosted repository is oriented toward development of Voyant Tools, including bug and issue tracking. Help with using the interface is available from the [Voyant Tools Documentation](http://docs.voyant-tools.org) site.
# Contributing
There are many ways of contributing to the development of Voyant Tools:
* use it and let us know ([@VoyantTools](http://twitter.com/VoyantTools)), having people use it is our reward :)
* if appropriate, please consider citing it
* if you find a bug, identify an issue or have requests, submit a [GitHub ticket](https://github.com/sgsinclair/Voyant/issues) (or [tweet](http://twitter.com/VoyantTools))
* if you're a developer, see instructions for setting up a development environment and consider submitting a patch or pull request
# License
Voyant Tools is an open-source project and the code is available through [GitHub](http://github.com/sgsinclair/Voyant). The code is under a [GPL3 license](http://www.gnu.org/licenses/gpl-3.0.en.html) and the content of the web application is under a [Creative Commons By Attribution license](https://creativecommons.org/licenses/by/4.0/).
# Voyant Tools 2.0
The currently available version of [Voyant Tools](http://voyant-tools.org/) is 2.0. It isa complete rewrite that is focused on better performance and scalability, as well as improved functionality (such as more powerful search). Voyant 3.0 is expected by 2020.
## Releases
For a somewhat more detailed overview of releases please see [VoyantServer releases](https://github.com/sgsinclair/VoyantServer/releases)
## Known Issues
* several skins and tools are not yet implemented
* Voyant slows down as the index grows
## Road Map
* new architecture to better support distributed indices (multiple users)
* update code to latest version of Lucene
* integrate some language-specific functionality such as part-of-speech tagging
* add functionality for word groups
* resume development of Spyral (Voyant Notebooks)
# Credits

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src/Voyant-master/pom.xml
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<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>org.voyant-tools</groupId>
<artifactId>Voyant</artifactId>
<packaging>war</packaging>
<name>Voyant</name>
<version>2.0.0-SNAPSHOT</version>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
</properties>
<build>
<sourceDirectory>${basedir}/src/main/java</sourceDirectory>
<outputDirectory>${basedir}/src/main/webapp/WEB-INF/classes</outputDirectory>
<resources>
<resource>
<directory>${basedir}/src/main/java</directory>
<excludes>
<exclude>**/*.java</exclude>
</excludes>
</resource>
<!-- make sure we grab the Voyant JS file liste -->
<resource>
<directory>${basedir}/src/main/resources</directory>
</resource>
</resources>
<plugins>
<plugin>
<artifactId>maven-dependency-plugin</artifactId>
<executions>
<execution>
<phase>install</phase>
<goals>
<goal>copy-dependencies</goal>
</goals>
<configuration>
<outputDirectory>${basedir}/src/main/webapp/WEB-INF/lib</outputDirectory>
<includeScope>runtime</includeScope>
<!-- we have to skip trombone to ensure that we're using compiled
classes from project -->
<excludeArtifactIds>trombone</excludeArtifactIds>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<!-- http://maven.apache.org/plugins/maven-war-plugin/overlays.html -->
<artifactId>maven-war-plugin</artifactId>
<configuration>
<outputDirectory>${basedir}/target</outputDirectory>
<webappDirectory>${basedir}/src/main/webapp</webappDirectory>
<warSourceDirectory>${basedir}/src/main/webapp</warSourceDirectory>
</configuration>
</plugin>
<plugin>
<artifactId>maven-compiler-plugin</artifactId>
<configuration>
<source>1.8</source>
<target>1.8</target>
<encoding>UTF-8</encoding>
</configuration>
</plugin>
<plugin>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-maven-plugin</artifactId>
</plugin>
</plugins>
</build>
<dependencies>
<dependency>
<groupId>org.voyant-tools</groupId>
<artifactId>trombone</artifactId>
<version>5.2.0-SNAPSHOT</version>
</dependency>
<!-- <dependency> <groupId>caja</groupId> <artifactId>caja</artifactId>
<version>r5127</version> <scope>compile</scope> </dependency> -->
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>servlet-api</artifactId>
<version>3.0-alpha-1</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>2.6</version>
</dependency>
<dependency>
<groupId>commons-fileupload</groupId>
<artifactId>commons-fileupload</artifactId>
<version>1.4</version>
</dependency>
<dependency>
<groupId>com.google.javascript</groupId>
<artifactId>closure-compiler</artifactId>
<version>v20190929</version>
</dependency>
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpclient</artifactId>
<version>4.4</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>maven2-repository.java.net</id>
<name>Java.net Repository for Maven</name>
<url>http://download.java.net/maven/2/</url>
<layout>default</layout>
</repository>
<repository>
<id>caja</id>
<name>Google Caja</name>
<url>http://google-caja.googlecode.com/svn/maven</url>
</repository>
<repository>
<id>trombone-mvn-repo</id>
<url>https://raw.github.com/sgsinclair/trombone/mvn-repo/</url>
<snapshots>
<enabled>true</enabled>
<updatePolicy>always</updatePolicy>
</snapshots>
</repository>
</repositories>
</project>

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src/Voyant-master/src/main/java/org/voyanttools/voyant/FlexibleParametersFactory.java
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package org.voyanttools.voyant;
import static java.security.AccessController.doPrivileged;
import java.io.File;
import java.nio.charset.Charset;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.List;
import java.util.Map;
import javax.servlet.ServletContext;
import javax.servlet.http.HttpServletRequest;
import org.apache.commons.fileupload.FileItem;
import org.apache.commons.fileupload.FileUploadException;
import org.apache.commons.fileupload.disk.DiskFileItemFactory;
import org.apache.commons.fileupload.servlet.ServletFileUpload;
import org.apache.http.NameValuePair;
import org.apache.http.client.utils.URLEncodedUtils;
import org.voyanttools.trombone.input.source.InputSourcesBuilder;
import org.voyanttools.trombone.util.FlexibleParameters;
import sun.security.action.GetPropertyAction;
/**
* This is a utility class for instantiating {@link FlexibleParameters} from {@link HttpServletRequest}s.
* @author Stéfan Sinclair, Cyril Briquet
*/
public class FlexibleParametersFactory {
private String build;
private String version;
public FlexibleParametersFactory(ServletContext servlet) {
this.build = servlet.getInitParameter("build");
this.version = servlet.getInitParameter("version");
}
/**
* Get an instance of {@link FlexibleParameters} from the {@link HttpServletRequest}.
*
* <p>This method handles simple forms as wells as multipart forms with file uploads.</p>
* @param request
* @return {@link FlexibleParameters} instance
* @throws Exception
*/
public FlexibleParameters getInstance(HttpServletRequest request) throws Exception {
return getInstance(request, false);
}
/**
* Get an instance of {@link FlexibleParameters} from the {@link HttpServletRequest}.
*
* <p>This method handles simple forms as wells as multipart forms with file uploads.</p>
* @param request
* @return {@link FlexibleParameters} instance
* @throws Exception
*/
@SuppressWarnings("unchecked")
public FlexibleParameters getInstance(HttpServletRequest request, boolean allowLocalFileSystemAccess) throws Exception {
if (request == null) {
throw new NullPointerException("illegal request");
}
final FlexibleParameters parameters = new FlexibleParameters();
parameters.setParameter("VOYANT_VERSION", version!=null ? version : "");
parameters.setParameter("VOYANT_BUILD", build!=null ? build : "");
parameters.setParameter("VOYANT_REMOTE_ID", request.getHeader("X-FORWARDED-FOR")!=null ? request.getHeader("X-FORWARDED-FOR") : request.getRemoteAddr());
final HttpParametersDecoder parametersDecoder = new HttpParametersDecoder(parameters);
if (ServletFileUpload.isMultipartContent(request) && !(request instanceof Voyant.PostedInputRequestWrapper)) {
final List<FileItem> items = getRequestItems(request);
Path tmpPath = Paths.get(Paths.get(doPrivileged(new GetPropertyAction("java.io.tmpdir"))).toString(), "tmp.voyant.uploads");
if (!Files.exists(tmpPath)) {
Files.createDirectory(tmpPath);
}
for (FileItem item : items) {
if (item.isFormField()) { // normal form field
parametersDecoder.decodeParameter(item.getFieldName(), item.getString(), allowLocalFileSystemAccess);
}
else { // file form field: this is uploaded, therefore the local access check can be bypassed
Path path = Files.createTempDirectory(tmpPath, "tmp.voyant.uploads");
File file = new File(path.toFile(), item.getName());
item.write(file);
parametersDecoder.decodeParameter("upload", file.toString(), true);
}
}
}
else {
if (request.getMethod().equals("GET")) {
// I couldn't for the life of me convince a GET request to use the specified character encoding (tried req.setCharacterEncoding() etc.)
// so we'll not use the simpler request.getParameterMap() and instead parse the query string ourselves
String queryString = request.getQueryString();
if (queryString!=null) {
List<NameValuePair> pairs = URLEncodedUtils.parse(request.getQueryString(), Charset.forName("UTF-8"));
for (NameValuePair pair : pairs) {
if (pair.getName().equals("_dc")==false) { // ignore the EXTJS param for GET requests
parametersDecoder.decodeParameters(pair.getName(), new String[]{pair.getValue()}, allowLocalFileSystemAccess);
}
}
}
}
else {
for (Map.Entry<String, String[]> param : ((Map<String, String[]>) request.getParameterMap()).entrySet()) {
parametersDecoder.decodeParameters(param.getKey(), param.getValue(), allowLocalFileSystemAccess || (request instanceof Voyant.PostedInputRequestWrapper && param.getKey().equals("upload")));
}
}
}
// check to see if this instance allows new input
if (System.getProperty("org.voyanttools.server.allowinput", "true").equals("false") && InputSourcesBuilder.hasParameterSources(parameters)) {
throw new IllegalArgumentException("This server has been configured to refuse new input.");
}
return parameters;
}
private static List<FileItem> getRequestItems(HttpServletRequest request) throws FileUploadException {
if (request == null) {
throw new NullPointerException("illegal request");
}
final DiskFileItemFactory factory = new DiskFileItemFactory();
final ServletFileUpload upload = new ServletFileUpload(factory);
final List<FileItem> items = upload.parseRequest(request);
return items;
}
}

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src/Voyant-master/src/main/java/org/voyanttools/voyant/HttpParametersDecoder.java
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package org.voyanttools.voyant;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import java.util.regex.Pattern;
import org.voyanttools.trombone.util.FlexibleParameters;
/**
* This is a utility class for decoding HTTP parameters intended to configure the behavior of a Trombone {@link Controller}.
* @author Stéfan Sinclair, Cyril Briquet
*/
public class HttpParametersDecoder {
private static final Pattern VALID_URL_PATTERN = Pattern.compile("^((https?|ftp)://|([\\w-]+\\.)+[\\w-]+($|/))");
private final FlexibleParameters parameters;
public HttpParametersDecoder(FlexibleParameters parameters) {
if (parameters == null) {
throw new NullPointerException("illegal properties");
}
this.parameters = parameters;
}
public synchronized void decodeParameter(String key, String value, boolean allowLocalFileSystemAccess) {
if (key == null) {
throw new NullPointerException("illegal key");
}
if (value == null) {
throw new NullPointerException("illegal value");
}
decodeParameters(key, new String[] { value }, allowLocalFileSystemAccess);
}
public synchronized void decodeParameters(String key, String[] values, boolean allowLocalFileSystemAccess) {
if (key == null) {
throw new NullPointerException("illegal key");
}
if (values == null) {
throw new NullPointerException("illegal values");
}
// let's strip the brackets that indicate an array
if (key.endsWith("[]") && key.length()>2) {key = key.substring(0, key.length()-2);}
if (key.equals("uri")) {
decodeURIParameters(key, values);
}
else if (key.equals("input")) {
decodeInlineParameters(key, values);
}
else if (key.equals("file") || key.equals("directory") || key.equals("upload")) {
if (allowLocalFileSystemAccess) {
addParameter(key, values);
}
}
else {
addParameter(key, values);
}
}
private synchronized void decodeURIParameters(String key, String[] values) {
if (key == null) {
throw new NullPointerException("illegal key");
}
if (values == null) {
throw new NullPointerException("illegal values");
}
final Set<String> uris = new HashSet<String>();
for (String uri : values) {
if (uri.trim().startsWith("file:")) {
throw new IllegalArgumentException("file:// protocol is not supported");
}
else {
uris.add(uri);
}
}
if (uris.isEmpty() == false) {
addParameter(key, uris.toArray(values));
}
}
private synchronized void decodeInlineParameters(String key, String[] values) {
if (key == null) {
throw new NullPointerException("illegal key");
}
if (values == null) {
throw new NullPointerException("illegal values");
}
final List<String> uris = new ArrayList<String>();
final List<String> strings = new ArrayList<String>();
for (String input : values) {
input = input.trim();
if (input.length() == 0) {
continue;
}
if (VALID_URL_PATTERN.matcher(input).find()) { // inline URI or URIs
for (String uri : input.split("\n+")) {
uri = uri.trim();
if (VALID_URL_PATTERN.matcher(uri).find()) {
if (uri.startsWith("http") || uri.startsWith("ftp")) {
uris.add(uri);
}
else {
uris.add("http://" + uri); // the protocol is probably http anyways ;)
}
}
}
}
else { // inline text chunk
strings.add(input);
}
}
if (uris.isEmpty() == false) {
addParameter("uri", uris.toArray(new String[0]));
}
if (strings.isEmpty() == false) {
addParameter("string", strings.toArray(new String[0]));
}
}
private synchronized void addParameter(String key, String[] values) {
if (key == null) {
throw new NullPointerException("illegal key");
}
if (values == null) {
throw new NullPointerException("illegal values");
}
/*
final String[] decodedValues = new String[values.length];
for (int y = 0 ; y < decodedValues.length ; ++y) {
try {
decodedValues[y] = URLDecoder.decode(values[y], "UTF-8");
}
catch (UnsupportedEncodingException e) {
throw new IllegalStateException(e.getMessage(), e);
}
}
*/
this.parameters.addParameter(key, values);
}
}

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package org.voyanttools.voyant;
import java.io.File;
import java.io.IOException;
import java.io.InputStream;
import java.nio.charset.Charset;
import java.util.ArrayList;
import java.util.Date;
import java.util.List;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.apache.commons.io.FileUtils;
import org.apache.commons.io.IOUtils;
import com.google.javascript.jscomp.CompilationLevel;
import com.google.javascript.jscomp.Compiler;
import com.google.javascript.jscomp.CompilerOptions;
import com.google.javascript.jscomp.Result;
import com.google.javascript.jscomp.SourceFile;
import com.google.javascript.jscomp.SourceMap;
import com.google.javascript.jscomp.SourceMap.PrefixLocationMapping;
/**
* @author Andrew MacDonald and Stéfan Sinclair
*/
public class JSCacher {
final static String ENCODING = "UTF-8";
final static String CACHED_FILENAME = "voyant.js";
final static String CACHED_FILENAME_MINIFIED = "voyant.min.js";
final static String SOURCE_MAP_FILENAME = "voyant.min.map.js";
// Closure options
final static int SUMMARY_DETAIL_LEVEL = 1;
public static void sendCache(HttpServletRequest request, HttpServletResponse response) throws IOException {
response.setCharacterEncoding(ENCODING);
// TODO add config for this?
boolean doSourceMap = true;
File basePath = new File(request.getSession().getServletContext().getRealPath("/"));
String debug = request.getParameter("debug");
File cachedFile = new File(basePath, "/resources/voyant/current/"+CACHED_FILENAME);
File cachedFileMinified = new File(basePath, "/resources/voyant/current/"+CACHED_FILENAME_MINIFIED);
File sourceMapFile = new File(basePath, "/resources/voyant/current/"+SOURCE_MAP_FILENAME);
if (debug!=null && debug.equals("true") && cachedFile.canWrite() && cachedFileMinified.canWrite() && sourceMapFile.canWrite()) {
long lastModifiedCachedFile = cachedFile.lastModified();
List<File> files = getCacheableFiles(basePath);
// look for any file that's been updated since last cache
boolean needsUpdate = false;
for (File file : files) {
if (file.lastModified() > lastModifiedCachedFile) {
needsUpdate = true;
break;
}
}
if (needsUpdate) {
List<SourceFile> sourceFiles = new ArrayList<SourceFile>();
String header = "/* This file created by JSCacher. Last modified: "+new Date().toString()+" */\n";
String footer = doSourceMap ? "\n//# sourceMappingURL=" + SOURCE_MAP_FILENAME : "";
StringBuffer cache = new StringBuffer(header);
for (File file : files) {
String s = FileUtils.readFileToString(file, Charset.forName(ENCODING));
cache.append(s).append("\n"); // assuming UTF-8
sourceFiles.add(SourceFile.fromFile(file.getPath()));
}
// non-minified version
FileUtils.writeStringToFile(cachedFile, cache.toString(), Charset.forName(ENCODING));
// minified version
Compiler compiler = new Compiler();
CompilerOptions options = new CompilerOptions();
List<String> tags = new ArrayList<String>();
tags.add("cfg");
tags.add("exports");
tags.add("choices");
tags.add("distinguishingFldsArray");
tags.add("undistinguishedRoot");
options.setExtraAnnotationNames(tags);
options.setStrictModeInput(false); // needed to avoid error on "arguments.callee.caller"
options.setSummaryDetailLevel(SUMMARY_DETAIL_LEVEL);
options.setLanguageIn(CompilerOptions.LanguageMode.ECMASCRIPT_2019);
options.setLanguageOut(CompilerOptions.LanguageMode.ECMASCRIPT5);
if (doSourceMap) {
options.setSourceMapOutputPath(SOURCE_MAP_FILENAME);
options.setSourceMapFormat(SourceMap.Format.V3);
options.setSourceMapIncludeSourcesContent(true);
List<PrefixLocationMapping> prefixes = new ArrayList<>();
String baseLocation = basePath.toString().replaceAll("\\\\", "/");
prefixes.add(new PrefixLocationMapping(baseLocation, ""));
options.setSourceMapLocationMappings(prefixes);
}
CompilationLevel.SIMPLE_OPTIMIZATIONS.setOptionsForCompilationLevel(options);
Result result = compiler.compile(new ArrayList<SourceFile>(), sourceFiles, options);
cache.setLength(0);
cache.append(header);
cache.append(compiler.toSource());
cache.append(footer);
FileUtils.writeStringToFile(cachedFileMinified, cache.toString(), Charset.forName(ENCODING));
// source map
if (doSourceMap && result.sourceMap != null) {
StringBuilder sourceMap = new StringBuilder();
result.sourceMap.appendTo(sourceMap, SOURCE_MAP_FILENAME);
FileUtils.writeStringToFile(sourceMapFile, sourceMap.toString(), Charset.forName(ENCODING));
}
}
response.sendRedirect(CACHED_FILENAME);
}
else {
response.sendRedirect(CACHED_FILENAME_MINIFIED);
}
}
private static List<File> getCacheableFiles(File basePath) throws IOException {
InputStream is = org.voyanttools.voyant.JSCacher.class.getResourceAsStream("voyant-js.txt");
List<String> lines = IOUtils.readLines(is, Charset.forName(ENCODING));
is.close();
List<File> files = new ArrayList<File>();
for (String jsFile : lines) {
if (jsFile.trim().startsWith("#") || jsFile.trim().isEmpty()) {continue;}
File f = new File(basePath, jsFile);
if (f.exists()) {files.add(f);}
else {
throw new IOException("File does not exist:"+f);
}
}
return files;
}
}

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src/Voyant-master/src/main/java/org/voyanttools/voyant/Localizer.java
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package org.voyanttools.voyant;
import java.io.File;
import java.io.IOException;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.apache.commons.io.FileUtils;
import org.apache.commons.lang3.StringUtils;
public class Localizer {
public static void sendCache(HttpServletRequest request, HttpServletResponse response) throws IOException {
response.setCharacterEncoding("UTF-8");
File basePath = new File(request.getSession().getServletContext().getRealPath("/"), "/resources/voyant/current");
String lang = request.getParameter("lang");
if (lang==null || lang.isEmpty()) {lang="en";}
File cachedFile = new File(basePath, "voyant-locale-"+lang+".js");
File sourceFile = new File(basePath, "localization.tsv");
if (!cachedFile.exists() || sourceFile.lastModified()>cachedFile.lastModified()) {
update(lang, sourceFile, cachedFile);
}
response.sendRedirect(cachedFile.getName());
}
private static void update(String lang, File sourceFile, File cachedFile) throws IOException {
List<String> lines = FileUtils.readLines(sourceFile, "UTF-8");
String header = lines.get(0);
int pos = header.indexOf("("+lang+")");
if (pos==-1) {
throw new IllegalArgumentException("Unable to find language: "+lang);
}
int column = StringUtils.countMatches(header.substring(0, pos), "\t");
int english = 3;
lines.remove(0);
Map<String, Map<String, String>> locationsMap = new HashMap<String, Map<String, String>>();
for (String line : lines) {
String[] cells = line.split("\t");
if (cells.length < 4 || cells[0].isEmpty() || cells[1].isEmpty() || cells[2].isEmpty() || cells[3].isEmpty()) {continue;}
String location = cells[1];
if (locationsMap.containsKey(location)==false) {
locationsMap.put(location, new HashMap<String, String>());
}
locationsMap.get(location).put(cells[2], cells.length>column && cells[column].isEmpty()==false ? cells[column] : cells[english]);
}
StringBuilder sb = new StringBuilder("Voyant.util.Localization.LANGUAGE='").append(lang).append("'\n");
for (Map.Entry<String, Map<String, String>> locationEntry : locationsMap.entrySet()) {
sb.append("Ext.apply(").append(locationEntry.getKey()).append(".i18n, {\n");
for (Map.Entry<String, String> classEntry : locationEntry.getValue().entrySet()) {
sb.append("\"").append(classEntry.getKey()).append("\":\"").append(classEntry.getValue().replace("\"", "\\\"")).append("\",\n");
}
sb.setLength(sb.length()-2);
sb.append("});\n");
}
FileUtils.writeStringToFile(cachedFile, sb.toString(), "UTF-8");
}
}

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src/Voyant-master/src/main/java/org/voyanttools/voyant/SpyralAuth.java
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package org.voyanttools.voyant;
import java.io.IOException;
import java.io.InputStream;
import java.net.URL;
import java.net.URLConnection;
import java.nio.charset.StandardCharsets;
import java.util.Properties;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import javax.servlet.ServletException;
import javax.servlet.http.Cookie;
import javax.servlet.http.HttpServlet;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.apache.commons.io.IOUtils;
public class SpyralAuth extends HttpServlet {
private static final long serialVersionUID = 1048044723303994604L;
@Override
protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws IOException, ServletException {
doRequest(req, resp);
}
@Override
protected void doPost(HttpServletRequest req, HttpServletResponse resp) throws IOException, ServletException {
doRequest(req, resp);
}
private void doRequest(HttpServletRequest req, HttpServletResponse resp) throws IOException {
Properties oauthprops = new Properties();
String propfile = this.getInitParameter("oauthprops");
oauthprops.load(getClass().getClassLoader().getResourceAsStream(propfile));
String clientId = (String) oauthprops.get("clientId");
String clientSecret = (String) oauthprops.get("clientSecret");
String oauthCallbackRedirect = (String) oauthprops.get("oauthCallbackRedirect");
String code = req.getParameter("code");
String charset = StandardCharsets.UTF_8.name();
String tokenURL = "https://github.com/login/oauth/access_token?code="+code+"&client_id="+clientId+"&client_secret="+clientSecret;
URL url = new URL(tokenURL);
URLConnection connection = url.openConnection();
connection.setDoOutput(true);
connection.setRequestProperty("Accept-Charset", charset);
InputStream is = null;
try {
is = connection.getInputStream();
String respString = IOUtils.toString(is, charset);
Pattern pattern = Pattern.compile("(access_token=)(\\w+)");
Matcher matcher = pattern.matcher(respString);
if (matcher.find()) {
String accessToken = matcher.group(2);
Cookie cookie = new Cookie("access-token", accessToken);
cookie.setPath("/");
resp.addCookie(cookie);
resp.sendRedirect(oauthCallbackRedirect);
}
} finally {
if (is != null) {
is.close();
}
}
}
}

496
src/Voyant-master/src/main/java/org/voyanttools/voyant/Trombone.java
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package org.voyanttools.voyant;
import java.io.BufferedReader;
import java.io.File;
import java.io.IOException;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.io.OutputStream;
import java.io.PrintWriter;
import java.io.StringReader;
import java.io.StringWriter;
import java.io.Writer;
import java.net.MalformedURLException;
import java.net.URL;
import java.net.URLConnection;
import java.nio.charset.Charset;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.text.DateFormat;
import java.util.Calendar;
import java.util.HashSet;
import java.util.Map;
import java.util.Set;
import javax.servlet.ServletConfig;
import javax.servlet.ServletException;
import javax.servlet.http.HttpServlet;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import javax.servlet.http.HttpSession;
import javax.xml.transform.Source;
import javax.xml.transform.TransformerException;
import javax.xml.transform.stream.StreamSource;
import org.apache.commons.io.FileUtils;
import org.apache.commons.io.IOUtils;
import org.voyanttools.trombone.Controller;
import org.voyanttools.trombone.model.Corpus;
import org.voyanttools.trombone.model.CorpusAccess;
import org.voyanttools.trombone.results.ResultsOutputFormat;
import org.voyanttools.trombone.storage.Storage;
import org.voyanttools.trombone.storage.file.FileStorage;
import org.voyanttools.trombone.storage.memory.MemoryStorage;
import org.voyanttools.trombone.tool.corpus.CorpusManager;
import org.voyanttools.trombone.util.FlexibleParameters;
/**
* @author Stéfan Sinclair, Cyril Briquet
*/
public class Trombone extends HttpServlet {
private static final long serialVersionUID = 392155275393370320L;
private final Set<String> hiddenParameters = new HashSet<String>();
private Storage storage;
private FlexibleParametersFactory flexibleParametersFactory;
public Trombone() throws IOException {
this.storage = null;
String storage = System.getProperty("org.voyanttools.server.storage", "file-per-corpus").toLowerCase();
if (storage.equals("memory")) {
this.storage = new MemoryStorage();
} else {
FlexibleParameters parameters = new FlexibleParameters();
parameters.setParameter("storage", storage);
this.storage = new FileStorage(parameters);
}
}
@Override
public void init() {
this.flexibleParametersFactory = new FlexibleParametersFactory(this.getServletContext());
}
@Override
protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws IOException, ServletException {
doRequest(req, resp);
}
@Override
protected void doPost(HttpServletRequest req, HttpServletResponse resp) throws IOException, ServletException {
doRequest(req, resp);
}
private void doRequest(HttpServletRequest req, HttpServletResponse resp) throws IOException {
if (req == null) {
throw new NullPointerException("illegal servlet request");
}
if (resp == null) {
throw new NullPointerException("illegal servlet response");
}
final FlexibleParameters parameters = getFlexibleParameters(req);
// append accessIP in case it's needed
parameters.setParameter("accessIP", req.getRemoteAddr());
if (parameters.containsKey("corpus")) {
String id = parameters.getParameterValue("corpus");
// check for password, for now just setting the session value (error will be raised later if needed)
if (parameters.containsKey("passwordForSession")) {
String password = parameters.getParameterValue("passwordForSession");
Corpus corpus = CorpusManager.getCorpus(storage, new FlexibleParameters(new String[]{"corpus="+id}));
FlexibleParameters newParams = parameters.clone();
newParams.setParameter("password", password);
CorpusAccess corpusAccess = corpus.getValidatedCorpusAccess(newParams);
if (corpusAccess==CorpusAccess.ADMIN || corpusAccess==CorpusAccess.ACCESS) {
req.getSession().setAttribute("password-"+id, password);
}
resp.setContentType("text/plain");
resp.getWriter().write(corpusAccess.name());
return;
}
else if (parameters.containsKey("passwordForSessionRemove")) {
HttpSession session = req.getSession();
session.removeAttribute("password-"+id);
return;
}
// see if we have a session-stored password
else {
HttpSession session = req.getSession();
String password = (String) session.getAttribute("password-"+id);
if (password!=null) {
password = password.trim();
if (password.isEmpty()==false) {
parameters.setParameter("password", password);
}
}
}
}
if (parameters == null) {
return;
}
try {
doRequest(parameters, req, resp);
this.log(generateLogMessageForSuccessfulRequest(parameters, req));
}
catch (Exception e) {
this.log("ERROR: "+e.getLocalizedMessage(), e);
this.log(generateLogMessageForFailedRequest(parameters, this.hiddenParameters));
resp.setStatus(500);
try {
final PrintWriter writer = resp.getWriter();
String message = e.getMessage();
if (message!=null && message.isEmpty()==false) {
writer.write(e.getMessage()+"\n");
}
e.printStackTrace(writer);
}
catch (IOException ioe) {
this.log("ERROR: Unable to write results", ioe);
}
}
}
private FlexibleParameters getFlexibleParameters(HttpServletRequest req) {
if (req == null) {
throw new NullPointerException("illegal servlet request");
}
try {
return this.flexibleParametersFactory.getInstance(req);
}
catch (Exception e) {
this.log("ERROR: Unable to create parameters", e);
this.log(generateLogMessageForUnprocessableParameters(((Map<String, String[]>) req.getParameterMap()).entrySet(), this.hiddenParameters));
return null;
}
}
private void doRequest(FlexibleParameters parameters, HttpServletRequest req, HttpServletResponse resp) throws IOException, TransformerException {
if (parameters == null) {
throw new NullPointerException("illegal parameters");
}
if (req == null) {
throw new NullPointerException("illegal servlet request");
}
if (resp == null) {
throw new NullPointerException("illegal servlet response");
}
resp.setContentType(ResultsOutputFormat.getResultsOutputFormat(parameters.getParameterValue("outputFormat", "json")).getContentType());
if (parameters.containsKey("fetchData")) {
URL url;
URLConnection c;
try {
url = new URL(parameters.getParameterValue("fetchData").replaceAll(" ", "+"));
System.out.println(url);
c = url.openConnection();
// StringBuilder sb = new StringBuilder();
// BufferedReader in = new BufferedReader(new InputStreamReader(c.getInputStream()));
// String inputLine;
// while ((inputLine = in.readLine()) != null) {
// sb.append(inputLine);
// }
// in.close();
// System.out.println(sb.toString());
}
catch (MalformedURLException e) {
throw new IllegalArgumentException("Attempt to use a malformed URL: "+parameters.getParameterValue("fetchJSON"), e);
}
c.addRequestProperty("User-Agent", "Mozilla/4.0 (compatible; Trombone)");
InputStream is = null;
try {
is = c.getInputStream();
c.setReadTimeout(60000);
resp.setContentType(c.getContentType());
// if (parameters.containsKey("format")) {
// String format = parameters.getParameterValue("format").toUpperCase();
// if (format.equals("XML")) {
// resp.setContentType("application/xml;charset=UTF-8");
// } else if (format.equals("JSON")) {
// resp.setContentType("application/json;charset=UTF-8");
// }
// }
IOUtils.copy(is, resp.getWriter());
resp.flushBuffer();
}
finally {
if (is!=null) {
is.close();
}
}
}
else if (parameters.containsKey("fetchJSON")) {
URL url;
URLConnection c;
try {
url = new URL(parameters.getParameterValue("fetchJSON").replaceAll(" ", "+"));
System.out.println(url);
c = url.openConnection();
c.setReadTimeout(0);
}
catch (MalformedURLException e) {
throw new IllegalArgumentException("Attempt to use a malformed URL: "+parameters.getParameterValue("fetchJSON"), e);
}
c.addRequestProperty("User-Agent", "Mozilla/4.0 (compatible; Trombone)");
// c.setReadTimeout(readTimeoutMilliseconds);
// c.setConnectTimeout(connectTimeoutMilliseconds);
InputStream is = null;
try {
is = c.getInputStream();
//application/json
resp.setContentType("application/json;charset=UTF-8");
IOUtils.copy(is, resp.getWriter());
resp.flushBuffer();
}
finally {
if (is!=null) {
is.close();
}
}
}
else if (parameters.containsKey("template")) {
parameters.setParameter("outputFormat", "xml"); // we need xml for transformation
final Writer xmlResultsWriter = new StringWriter();
runTromboneController(parameters, xmlResultsWriter);
Source xml = new StreamSource(new StringReader(xmlResultsWriter.toString()));
Source xslt = XslTransformer.getTemplateSource(parameters.getParameterValue("template"), this.getServletConfig().getServletContext());
FlexibleParameters xslParameters = new FlexibleParameters();
xslParameters.setParameter("tromboneUrl", req.getRequestURL().toString());
for (Map.Entry<String, String[]> param : ((Map<String, String[]>) req.getParameterMap()).entrySet()) {
if (this.hiddenParameters.contains(param.getKey()) == true) { // skip hidden parameter
continue;
}
xslParameters.setParameter(param.getKey(), param.getValue());
}
XslTransformer.transform(xslParameters, xml, xslt, resp.getWriter());
}
else if (parameters.getParameterValue("outputFormat", "").toUpperCase().equals("ZIP")) {
resp.setHeader("Content-Disposition", "filename=" + parameters.getParameterValue("zipFilename", "VoyantCorpusDownload.zip"));
OutputStream outputStream = resp.getOutputStream();
final Controller controller = new Controller(storage, parameters);
try {
controller.run(outputStream);
}
catch (Exception e) {
this.log("ERROR: "+e.getLocalizedMessage(), e);
this.log(generateLogMessageForFailedRequest(parameters, this.hiddenParameters));
resp.setStatus(500);
resp.sendError(500, "Unable to produce ZIP file.\n"+e.getMessage());
}
outputStream.flush();
outputStream.close();
}
else {
// we set a permissive control to data to allow calls from elsewhere – this may need to be monitored
resp.setHeader("Access-Control-Allow-Origin", "*");
Writer writer = resp.getWriter();
runTromboneController(parameters, resp.getWriter());
writer.flush();
writer.close();
}
}
private void runTromboneController(FlexibleParameters parameters, Writer writer) throws IOException {
if (parameters == null) {
throw new NullPointerException("illegal parameters");
}
if (writer == null) {
throw new NullPointerException("illegal writer");
}
// intercept to see if we have a notebook in resources
if (parameters.getParameterValue("tool", "").equals("notebook.NotebookManager") && parameters.getParameterValue("action", "").equals("load") && parameters.getParameterValue("id","").trim().isEmpty()==false) {
File file = new File(getServletContext().getRealPath("/resources/spyral/notebooks"), parameters.getParameterValue("id")+".html");
if (file.exists()) {
String string = FileUtils.readFileToString(file);
parameters.setParameter("data", string);
parameters.removeParameter("id"); // we can't overwrite this, so make sure to remove it
}
}
final Controller controller = new Controller(storage, parameters, writer);
controller.run();
}
private String getTemplatePath(FlexibleParameters parameters) {
if (parameters == null) {
throw new NullPointerException("illegal parameters");
}
String templatePath = parameters.getParameterValue("template");
if (templatePath.contains("/") == false) {
templatePath = getServletContext().getRealPath("/resources/xsl/"+templatePath);
}
if (templatePath.endsWith(".xsl") == false) {
templatePath += ".xsl";
}
return templatePath;
}
private static String generateLogMessageForUnprocessableParameters(Set<Map.Entry<String, String[]>> rawParameters, Set<String> hiddenParameters) {
if (rawParameters == null) {
throw new NullPointerException("illegal parameters");
}
if (rawParameters.isEmpty()) {
return "(No parameters specified.)";
}
else {
final StringBuilder sb = new StringBuilder("Parameters:\n");
for (Map.Entry<String, String[]> param : rawParameters) {
appendRequestParameter(sb.append("\t"), param.getKey(), param.getValue(), hiddenParameters);
}
return sb.toString();
}
}
private static String generateLogMessageForSuccessfulRequest(FlexibleParameters parameters, HttpServletRequest req) {
if (parameters == null) {
throw new NullPointerException("illegal parameters");
}
if (req == null) {
throw new NullPointerException("illegal servlet request");
}
final StringBuilder sb = new StringBuilder("TOOL: ");
if (parameters.containsKey("tool") == true) {
final String[] tools = parameters.getParameterValues("tool");
for (int i=0, len=tools.length ; i < len ; i++) {
sb.append(tools[i]);
if (i+1 < len) {
sb.append(",");
}
}
}
else {
sb.append("CorpusSummary");
}
if (parameters.containsKey("corpus")) {
sb.append("; CORPUS: ").append(parameters.getParameterValue("corpus"));
}
final Calendar now = Calendar.getInstance();
sb.append("; TIME: ").append(DateFormat.getInstance().format(now.getTime())).append(" (").append(now.getTimeInMillis()).append(")");
sb.append("; REQUEST: ").append(req.getRemoteHost()).append(" (").append(req.getRemoteAddr()).append(")");
return sb.toString();
}
private static String generateLogMessageForFailedRequest(FlexibleParameters parameters, Set<String> hiddenParameters) {
if (parameters == null) {
throw new NullPointerException("illegal parameters");
}
final StringBuilder sb = new StringBuilder("Parameters:\n");
for (String key : parameters.getKeys()) {
appendRequestParameter(sb.append("\t"), key, parameters.getParameterValues(key), hiddenParameters);
}
return sb.toString();
}
private static void appendRequestParameter(StringBuilder sb, String key, String[] values, Set<String> hiddenParameters) {
if (sb == null) {
throw new NullPointerException("illegal StringBuilder");
}
if (key == null) {
throw new NullPointerException("illegal key");
}
if (values == null) {
throw new NullPointerException("illegal values");
}
if (hiddenParameters == null) {
throw new NullPointerException("illegal hidden parameters");
}
sb.append(key).append(": ");
if (hiddenParameters.contains(key) == true) { // bail if we shouldn't show this
sb.append(" (hidden)");
}
else if (values.length == 1) { // 1 key, 1 value
sb.append(cleanParameterValue(values[0]));
}
else { // 1 key, multiple values
sb.append("[");
for (int i=0, len=values.length, mlen=values.length-1 ; i < len ; i++) {
sb.append(cleanParameterValue(values[i]));
if (i < mlen) {
sb.append("; ");
}
}
sb.append("]");
}
sb.append("\n");
}
private static String cleanParameterValue(String parameterValue) {
if (parameterValue == null) {
throw new NullPointerException("illegal value");
}
parameterValue = parameterValue.replaceAll("\\s+", " ");
if (parameterValue.length() > 100) {
parameterValue = parameterValue.substring(0, 100) + "…";
}
return parameterValue;
}
public static boolean hasVoyantServerResource(String resource) {
return Files.exists(getVoyantServerResourcePath(resource));
}
public static String getVoyantServerResource(String resource) throws IOException {
return new String(Files.readAllBytes(getVoyantServerResourcePath(resource)), Charset.forName("UTF-8"));
}
private static Path getVoyantServerResourcePath(String resource) {
// make file from resource to get filename only (avoid traversal vulnerability)
return Paths.get(System.getProperty("java.io.tmpdir"), "voyant-server", new File(resource).getName());
}
}

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src/Voyant-master/src/main/java/org/voyanttools/voyant/Voyant.java
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package org.voyanttools.voyant;
import java.io.IOException;
import java.io.PrintWriter;
import java.io.StringWriter;
import java.util.Calendar;
import java.util.Collections;
import java.util.Enumeration;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Map;
import java.util.Set;
import javax.servlet.ServletException;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletRequestWrapper;
import javax.servlet.http.HttpServletResponse;
import javax.servlet.http.HttpServletResponseWrapper;
import javax.xml.transform.TransformerException;
import org.json.simple.JSONObject;
import org.json.simple.JSONValue;
import org.voyanttools.trombone.util.FlexibleParameters;
/**
* @author Stéfan Sinclair
*/
public class Voyant {
/**
* Pre-process the request. At the moment this will look if there's a referer,
* and if so but no input or corpus parameters are provided, it will redirect
* to the same URL but with the referer as input.
* @param request
* @param response
* @return true if preProcessing has resulted in a redirect
* @throws Exception
*/
public static boolean preProcess(HttpServletRequest request, HttpServletResponse response) throws Exception {
final String method = request.getMethod();
if (method==null) {return false;}
final FlexibleParametersFactory flexibleParametersFactory = new FlexibleParametersFactory(request.getSession().getServletContext());
final FlexibleParameters params = flexibleParametersFactory.getInstance(request);
// if we have a POST request, we need to create the corpus before redirecting
if (method.equals("POST") && request.getParameter("noRedirect") == null) {
return handlePostAndRedirect(request, response, params);
}
// if we have a GET request, we need to check for a useReferer parameter
else if (method.equals("GET")) {
return handleRefererAndRedirect(request, response, params);
}
return false;
}
public static String getBaseUrlString(HttpServletRequest request) {
StringBuilder sb = new StringBuilder("//").append(request.getServerName());
int serverPort = request.getServerPort();
if (serverPort!=80 && serverPort!=443) {
sb.append(":").append(serverPort);
}
String contextPath = request.getContextPath();
if (contextPath.isEmpty()==false) {
sb.append(contextPath);
}
sb.append("/");
return sb.toString();
}
/**
* The only time we should be here is when we have a post method to Voyant that includes input and that
* needs to be processed to create a new corpus, and then redirect to the URL with the corpus.
* @param request
* @param response
* @param params
* @return
* @throws IOException
* @throws TransformerException
* @throws ServletException
*/
private static boolean handlePostAndRedirect(HttpServletRequest request,
HttpServletResponse response, FlexibleParameters params) throws IOException, TransformerException, ServletException {
PostedInputResponseWrapper postedInputResponseWrapper = new PostedInputResponseWrapper(response);
request.getRequestDispatcher("/trombone").include(new PostedInputRequestWrapper(request, params), postedInputResponseWrapper);
String responseString = postedInputResponseWrapper.toString();
JSONObject obj= (JSONObject) JSONValue.parse(responseString);
JSONObject builder = (JSONObject) obj.get("stepEnabledCorpusCreator");
String corpusId = (String) builder.get("storedId");
final StringBuilder uri = new StringBuilder("./?corpus=").append(corpusId);
response.sendRedirect(uri.toString());
return true;
}
private static boolean handleRefererAndRedirect(HttpServletRequest request,
HttpServletResponse response, FlexibleParameters params) throws IOException {
// only do this if we have a referer
String referer = request.getHeader("referer");
if ((referer == null) || (referer.isEmpty() == true)) {
return false;
}
// only continue if we have useReferer parameter
if (params.getParameterBooleanValue("useReferer") == false) {return false;}
if ((params.containsKey("input") == false) && (params.containsKey("corpus") == false)) {
params.removeParameter("useReferer");
if (params.getParameterBooleanValue("forceUpdate") == true) {
referer = referer + String.valueOf(Calendar.getInstance().getTimeInMillis());
}
params.addParameter("input", referer);
final StringBuilder uri = new StringBuilder("./?"); // hoping this works
uri.append(params.getAsQueryString());
response.sendRedirect(uri.toString());
return true;
}
return false;
}
static class PostedInputRequestWrapper extends HttpServletRequestWrapper {
private final String TOOL = "corpus.CorpusCreator";
private FlexibleParameters params;
private PostedInputRequestWrapper(HttpServletRequest request, FlexibleParameters params) {
super(request);
this.params = params;
}
@Override
public Map<String,String[]> getParameterMap() {
// we need to create a new map because some servlets provide an unmodifiable map
Map<String, String[]> map = new HashMap<String, String[]>();
Enumeration<String> e = getParameterNames();
while (e.hasMoreElements()) {
String name = e.nextElement();
map.put(name, getParameterValues(name));
}
return map;
}
@Override
public Enumeration<String> getParameterNames() {
Set<String> names = new HashSet<String>();
names.addAll(params.getKeys());
if (!names.contains("tool")) {names.add("tool");}
return Collections.enumeration(names);
}
@Override
public String getParameter(String name) {
return name.equals("tool") ? TOOL : params.getParameterValue(name);
}
@Override
public String[] getParameterValues(String name) {
return name.equals("tool") ? new String[]{getParameter("tool")} : params.getParameterValues(name);
}
}
private static class PostedInputResponseWrapper extends HttpServletResponseWrapper {
private StringWriter stringWriter;
private PrintWriter writer;
private PostedInputResponseWrapper(HttpServletResponse response) {
super(response);
stringWriter = new StringWriter();
writer = new PrintWriter(stringWriter);
}
@Override
public PrintWriter getWriter() {
return writer;
}
@Override
public String toString() {
// writer.flush();
writer.flush();
return stringWriter.toString();
}
}
}

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src/Voyant-master/src/main/java/org/voyanttools/voyant/XslTransformer.java
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package org.voyanttools.voyant;
import java.io.File;
import java.io.Writer;
import javax.servlet.ServletContext;
import javax.xml.transform.Source;
import javax.xml.transform.Transformer;
import javax.xml.transform.TransformerException;
import javax.xml.transform.TransformerFactory;
import javax.xml.transform.stream.StreamResult;
import javax.xml.transform.stream.StreamSource;
import org.voyanttools.trombone.util.FlexibleParameters;
/**
* @author Stéfan Sinclair, Cyril Briquet
*/
public class XslTransformer {
static void transform(Source xml, Source xslt, Writer writer) throws TransformerException {
transform(new FlexibleParameters(), xml, xslt, writer);
}
static void transform(FlexibleParameters parameters, Source xml, Source xslt, Writer writer) throws TransformerException {
System.setProperty("javax.xml.transform.TransformerFactory", "net.sf.saxon.TransformerFactoryImpl");
final TransformerFactory transformerFactory = TransformerFactory.newInstance();
final Transformer transformer = transformerFactory.newTransformer(xslt);
for (String key : parameters.getKeys()) {
final String[] vals = parameters.getParameterValues(key);
transformer.setParameter(key, vals.length == 1 ? vals[0] : vals);
}
transformer.transform(xml, new StreamResult(writer));
}
static Source getTemplatePath(String template, File defaultDirectory) {
String templatePath = template;
if (templatePath.contains("/") == false) {
templatePath = new File(defaultDirectory, templatePath).toString();
}
if (templatePath.endsWith(".xsl") == false) {
templatePath += ".xsl";
}
return new StreamSource(templatePath);
}
public static Source getTemplateSource(String template, ServletContext servletContext) {
String path = servletContext.getRealPath("/resources/xsl");
return getTemplatePath(template, new File(path));
}
}

1
src/Voyant-master/src/main/resources/.gitignore vendored
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/oauth.properties

193
src/Voyant-master/src/main/resources/org/voyanttools/voyant/voyant-js.txt
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# BUBBLELINES
resources/bubblelines/Bubblelines.js
# KNOTS
resources/knots/Knots.js
# CIRRUS
resources/cirrus/html5/Cirrus.js
resources/cirrus/html5/Word.js
resources/cirrus/html5/WordController.js
# WORDTREE
resources/doubletree/DoubleTree.js
resources/doubletree/Trie.js
# TERMSRADIO
resources/termsradio/TermsRadio.js
# UTILS
app/util/Assignable.js
app/util/Api.js
app/util/Localization.js
app/util/Colors.js
app/util/Deferrable.js
app/util/DetailedError.js
app/util/ResponseError.js
app/util/SparkLine.js
app/util/Toolable.js
app/util/Transferable.js
app/util/Variants.js
app/util/Downloadable.js
app/util/Storage.js
app/util/DiacriticsRemover.js
app/notebook/util/Show.js
app/notebook/util/Embed.js
# MODELS
app/data/model/AnalysisToken.js
app/data/model/Context.js
app/data/model/CorpusFacet.js
app/data/model/CorpusCollocate.js
app/data/model/CorpusTerm.js
app/data/model/CorpusNgram.js
app/data/model/Dimension.js
app/data/model/Document.js
app/data/model/DocumentEntity.js
app/data/model/DocumentQueryMatch.js
app/data/model/DocumentTerm.js
app/data/model/PrincipalComponent.js
app/data/model/RelatedTerm.js
app/data/model/StatisticalAnalysis.js
app/data/model/Token.js
app/data/model/TermCorrelation.js
# STORES
app/data/store/VoyantStore.js
app/data/store/CAAnalysis.js
app/data/store/Contexts.js
app/data/store/CorpusCollocates.js
app/data/store/CorpusFacets.js
app/data/store/CorpusTerms.js
app/data/store/DocumentQueryMatches.js
app/data/store/DocumentTerms.js
app/data/store/DocumentEntities.js
app/data/store/Documents.js
app/data/store/PCAAnalysis.js
app/data/store/DocSimAnalysis.js
app/data/store/CorpusNgrams.js
app/data/store/RelatedTerms.js
app/data/store/TermCorrelations.js
app/data/store/Tokens.js
app/data/store/TSNEAnalysis.js
app/data/store/NotebookFacets.js
# TABLES
app/data/util/Table.js
app/data/util/NetworkGraph.js
app/data/util/Geonames.js
# CORPUS (here because store is needed)
app/data/model/Corpus.js
# WIDGETS
app/widget/CodeEditor.js
app/widget/CorpusSelector.js
app/widget/ListEditor.js
app/widget/StopListOption.js
app/widget/QuerySearchField.js
app/widget/TotalPropertyStatus.js
app/widget/DocumentSelector.js
app/widget/CorpusDocumentSelector.js
app/widget/DownloadFilenameBuilder.js
app/widget/DownloadFileFormat.js
app/widget/DownloadOptions.js
app/widget/FontFamilyOption.js
app/widget/ColorPaletteOption.js
app/widget/VoyantChart.js
app/widget/LiveSearchGrid.js
app/widget/ProgressMonitor.js
app/widget/VoyantTableTransform.js
app/widget/CategoriesBuilder.js
app/widget/VoyantNetworkGraph.js
app/widget/ReaderGraph.js
# PANELS
app/panel/Panel.js
app/panel/VoyantTabPanel.js
# we need facet after panel but before catalogue
app/widget/Facet.js
app/panel/Bubbles.js
app/panel/Bubblelines.js
app/panel/Catalogue.js
app/panel/Cirrus.js
app/panel/CollocatesGraph.js
app/panel/Contexts.js
app/panel/CorpusCollocates.js
app/panel/CorpusTermSummary.js
app/panel/Correlations.js
app/panel/CorpusCreator.js
app/panel/DreamScape.js
app/panel/Knots.js
app/panel/Phrases.js
app/panel/CorpusTerms.js
app/panel/DocumentTerms.js
app/panel/Documents.js
app/panel/DocumentsFinder.js
app/panel/Embedder.js
app/panel/Fountain.js
app/panel/RezoViz.js
app/panel/Loom.js
app/panel/MicroSearch.js
app/panel/Mandala.js
app/panel/MicroOcp.js
app/panel/Reader.js
app/panel/SimpleDocReader.js
app/panel/ScatterPlot.js
app/panel/StreamGraph.js
app/panel/Summary.js
app/panel/TextualArc.js
app/panel/TopicContexts.js
app/panel/TermsBerry.js
app/panel/TermsRadio.js
app/panel/Trends.js
app/panel/NoTool.js
app/panel/VoyantFooter.js
app/panel/VoyantHeader.js
app/panel/CorpusSet.js
app/panel/ScatterSet.js
app/panel/Subset.js
app/panel/CollocatesSet.js
app/panel/BubblelinesSet.js
app/panel/CustomSet.js
app/panel/Veliza.js
app/panel/WordTree.js
app/panel/WordWall.js
app/panel/Topics.js
app/panel/Via.js
# NOTEBOOKS
app/notebook/editor/button/Add.js
app/notebook/editor/button/Edit.js
app/notebook/editor/button/Export.js
app/notebook/editor/button/Counter.js
app/notebook/editor/button/MoveDown.js
app/notebook/editor/button/MoveUp.js
app/notebook/editor/button/Remove.js
app/notebook/editor/button/Metadata.js
app/notebook/editor/button/Movement.js
app/notebook/editor/button/Run.js
app/notebook/editor/button/RunAll.js
app/notebook/editor/button/RunUntil.js
app/notebook/editor/EditorWrapper.js
app/notebook/editor/CodeEditor.js
app/notebook/editor/CodeEditorWrapper.js
app/notebook/editor/TextEditor.js
app/notebook/editor/TextEditorWrapper.js
app/notebook/storage/github/OctokitWrapper.js
app/notebook/storage/github/ReposBrowser.js
app/notebook/storage/github/FileSaver.js
app/notebook/storage/github/GitHubDialogs.js
app/notebook/storage/voyant/StorageDialogs.js
app/notebook/Catalogue.js
app/notebook/Notebook.js
# APPS
app/VoyantApp.js
app/VoyantCorpusApp.js
app/VoyantCorpusToolsetApp.js
app/VoyantDefaultApp.js
app/VoyantDocumentToolsetApp.js
app/VoyantNotebookApp.js
app/VoyantToolApp.js

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/docs
/json
.#webclasspath

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src/Voyant-master/src/main/webapp/META-INF/MANIFEST.MF
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Manifest-Version: 1.0
Class-Path:

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src/Voyant-master/src/main/webapp/WEB-INF/jetty-web.xml
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<Configure class="org.eclipse.jetty.webapp.WebAppContext">
<Set name="maxFormContentSize">100000000</Set> <!-- should be 100MB -->
</Configure>

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<?xml version="1.0" encoding="UTF-8"?>
<web-app xmlns="http://java.sun.com/xml/ns/javaee"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://java.sun.com/xml/ns/javaee
http://java.sun.com/xml/ns/javaee/web-app_3_0.xsd"
version="3.0">
<context-param>
<param-name>version</param-name>
<param-value>2.4</param-value>
</context-param>
<context-param>
<param-name>build</param-name>
<param-value>M55</param-value>
</context-param>
<servlet>
<servlet-name>tool</servlet-name>
<jsp-file>/tool/index.jsp</jsp-file>
</servlet>
<servlet-mapping>
<servlet-name>catalogue</servlet-name>
<url-pattern>/catalogue/*</url-pattern>
</servlet-mapping>
<servlet>
<servlet-name>catalogue</servlet-name>
<jsp-file>/catalogue/index.jsp</jsp-file>
</servlet>
<servlet-mapping>
<servlet-name>microocp</servlet-name>
<url-pattern>/microocp/*</url-pattern>
</servlet-mapping>
<servlet>
<servlet-name>microocp</servlet-name>
<jsp-file>/microocp/index.jsp</jsp-file>
</servlet>
<servlet-mapping>
<servlet-name>tool</servlet-name>
<url-pattern>/tool/*</url-pattern>
</servlet-mapping>
<!-- we changed from spiral to spyral, we'll redirect in spyral -->
<servlet-mapping>
<servlet-name>spiral</servlet-name>
<url-pattern>/spiral/*</url-pattern>
</servlet-mapping>
<servlet>
<servlet-name>spiral</servlet-name>
<jsp-file>/spyral/index.jsp</jsp-file>
</servlet>
<servlet-mapping>
<servlet-name>spyral-oauth</servlet-name>
<url-pattern>/spyral/oauth</url-pattern>
</servlet-mapping>
<servlet>
<servlet-name>spyral-oauth</servlet-name>
<jsp-file>/spyral/oauth/index.jsp</jsp-file>
<init-param>
<param-name>oauthprops</param-name>
<param-value>oauth.properties</param-value>
</init-param>
</servlet>
<servlet-mapping>
<servlet-name>spyral-oauth-callback</servlet-name>
<url-pattern>/spyral/oauth/callback</url-pattern>
</servlet-mapping>
<servlet>
<servlet-name>spyral-oauth-callback</servlet-name>
<servlet-class>org.voyanttools.voyant.SpyralAuth</servlet-class>
<init-param>
<param-name>oauthprops</param-name>
<param-value>oauth.properties</param-value>
</init-param>
</servlet>
<servlet-mapping>
<servlet-name>spyral-cookie</servlet-name>
<url-pattern>/spyral/cookie</url-pattern>
</servlet-mapping>
<servlet>
<servlet-name>spyral-cookie</servlet-name>
<jsp-file>/spyral/cookie/index.jsp</jsp-file>
</servlet>
<servlet-mapping>
<servlet-name>spyral</servlet-name>
<url-pattern>/spyral/*</url-pattern>
</servlet-mapping>
<servlet>
<servlet-name>spyral</servlet-name>
<jsp-file>/spyral/index.jsp</jsp-file>
</servlet>
<!-- this is to handle a bad URL in Hermeneutica the book -->
<servlet-mapping>
<servlet-name>collocatesgraph</servlet-name>
<url-pattern>/CollocatesGraph/*</url-pattern>
</servlet-mapping>
<servlet>
<servlet-name>collocatesgraph</servlet-name>
<jsp-file>/tool/index.jsp</jsp-file>
</servlet>
<!-- available from http://localhost:8080/trombone?param=...&param=...&param=... -->
<servlet>
<servlet-name>trombone</servlet-name>
<servlet-class>org.voyanttools.voyant.Trombone</servlet-class>
</servlet>
<servlet-mapping>
<servlet-name>trombone</servlet-name>
<url-pattern>/trombone</url-pattern>
</servlet-mapping>
<welcome-file-list>
<welcome-file>index.jsp</welcome-file>
</welcome-file-list>
<!-- make sure that Javascript is sent as UTF-8 (Jetty does this but Tomcat doesn't) -->
<mime-mapping>
<extension>js</extension>
<mime-type>application/javascript;charset=UTF-8</mime-type>
</mime-mapping>
<!-- universally set encoding for UTF-8 (simpliflies jsp includes)-->
<jsp-config>
<jsp-property-group>
<url-pattern>*.jsp</url-pattern>
<page-encoding>UTF-8</page-encoding>
</jsp-property-group>
</jsp-config>
</web-app>

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/*
Ext.promise.Deferred adapted from:
[DeftJS](https://github.com/deftjs/deftjs5)
Copyright (c) 2012-2014 [DeftJS Framework Contributors](http://deftjs.org)
Open source under the [MIT License](http://en.wikipedia.org/wiki/MIT_License).
*/
/**
* Promises represent a future value; i.e., a value that may not yet be available.
*
* Users should **not** create instances of this class directly. Instead user code should
* use `new {@link Ext.Promise}()` or `new {@link Ext.Deferred}()` to create and manage
* promises. If the browser supports the standard `Promise` constructor, this class will
* not be used by `Ext.Promise`. This class will always be used by `Ext.Deferred` in order
* to provide enhanced capabilities beyond standard promises.
*
* A Promise's `{@link #then then()}` method is used to specify onFulfilled and onRejected
* callbacks that will be notified when the future value becomes available. Those callbacks
* can subsequently transform the value that was resolved or the reason that was rejected.
* Each call to `then` returns a new Promise of that transformed value; i.e., a Promise
* that is resolved with the callback return value or rejected with any error thrown by
* the callback.
*
* ## Basic Usage
*
* this.companyService.loadCompanies().then(
* function (records) {
* // Do something with result.
* },
* function (error) {
* // Do something on failure.
* }).
* always(function () {
* // Do something whether call succeeded or failed
* });
*
* The above code uses the `Promise` returned from the `companyService.loadCompanies()`
* method and uses `then()` to attach success and failure handlers. Finally, an `always()`
* method call is chained onto the returned promise. This specifies a callback function
* that will run whether the underlying call succeeded or failed.
*
* See `{@link Ext.Deferred}` for an example of using the returned Promise.
*
* [1]: http://wiki.ecmascript.org/doku.php?id=harmony:specification_drafts#april_14_2015_rev_38_final_draft
*
* @since 6.0.0
*/
Ext.define('Ext.promise.Promise', function (ExtPromise) {
var Deferred;
return {
requires: [
'Ext.promise.Deferred'
],
statics: {
/**
* @property CancellationError
* @static
* The type of `Error` propagated by the `{@link #method-cancel}` method. If
* the browser provides a native `CancellationError` then that type is used. If
* not, a basic `Error` type is used.
*/
CancellationError: Ext.global.CancellationError || Error,
_ready: function () {
// Our requires are met, so we can cache Ext.promise.Deferred
Deferred = Ext.promise.Deferred;
},
/**
* Returns a new Promise that will only resolve once all the specified
* `promisesOrValues` have resolved.
*
* The resolution value will be an Array containing the resolution value of each
* of the `promisesOrValues`.
*
* The public API's to use instead of this method are `{@link Ext.Promise#all}`
* and `{@link Ext.Deferred#all}`.
*
* @param {Mixed[]/Ext.promise.Promise[]/Ext.promise.Promise} promisesOrValues An
* Array of values or Promises, or a Promise of an Array of values or Promises.
* @return {Ext.promise.Promise} A Promise of an Array of the resolved values.
*
* @static
* @private
*/
all: function (promisesOrValues) {
//<debug>
if (!(Ext.isArray(promisesOrValues) || ExtPromise.is(promisesOrValues))) {
Ext.raise('Invalid parameter: expected an Array or Promise of an Array.');
}
//</debug>
return ExtPromise.when(promisesOrValues).then(function (promisesOrValues) {
var deferred = new Deferred(),
remainingToResolve = promisesOrValues.length,
results = new Array(remainingToResolve),
index, promiseOrValue, resolve, i, len;
if (!remainingToResolve) {
deferred.resolve(results);
}
else {
resolve = function (item, index) {
return ExtPromise.when(item).then (function (value) {
results[index] = value;
if (!--remainingToResolve) {
deferred.resolve(results);
}
return value;
}, function (reason) {
return deferred.reject(reason);
});
};
for (index = i = 0, len = promisesOrValues.length; i < len; index = ++i) {
promiseOrValue = promisesOrValues[index];
if (index in promisesOrValues) {
resolve(promiseOrValue, index);
}
else {
remainingToResolve--;
}
}
}
return deferred.promise;
});
},
/**
* Determines whether the specified value is a Promise (including third-party
* untrusted Promises or then()-ables), based on the Promises/A specification
* feature test.
*
* @param {Mixed} value A potential Promise.
* @return {Boolean} `true` if the given value is a Promise, otherwise `false`.
* @static
* @private
*/
is: function (value) {
return (Ext.isObject(value) || Ext.isFunction(value)) &&
Ext.isFunction(value.then);
},
/**
* Rethrows the specified Error on the next turn of the event loop.
* @static
* @private
*/
rethrowError: function (error) {
Ext.asap(function () {
throw error;
});
},
/**
* Returns a new Promise that either
*
* * Resolves immediately for the specified value, or
* * Resolves or rejects when the specified promise (or third-party Promise or
* then()-able) is resolved or rejected.
*
* The public API's to use instead of this method are `{@link Ext.Promise#resolve}`
* and `{@link Ext.Deferred#resolved}`.
*
* @param {Mixed} promiseOrValue A Promise (or third-party Promise or then()-able)
* or value.
* @return {Ext.Promise} A Promise of the specified Promise or value.
*
* @static
* @private
*/
when: function (value) {
var deferred = new Ext.promise.Deferred();
deferred.resolve(value);
return deferred.promise;
}
},
/**
* @property {Ext.promise.Deferred} Reference to this promise's
* `{@link Ext.promise.Deferred Deferred}` instance.
*
* @readonly
* @private
*/
owner: null,
/**
* NOTE: {@link Ext.promise.Deferred Deferreds} are the mechanism used to create new
* Promises.
* @param {Ext.promise.Deferred} owner The owning `Deferred` instance.
*
* @private
*/
constructor: function (owner) {
this.owner = owner;
},
/**
* Attaches onFulfilled and onRejected callbacks that will be notified when the future
* value becomes available.
*
* Those callbacks can subsequently transform the value that was fulfilled or the error
* that was rejected. Each call to `then` returns a new Promise of that transformed
* value; i.e., a Promise that is fulfilled with the callback return value or rejected
* with any error thrown by the callback.
*
* @param {Function} onFulfilled Optional callback to execute to transform a
* fulfillment value.
* @param {Function} onRejected Optional callback to execute to transform a rejection
* reason.
* @param {Function} onProgress Optional callback function to be called with progress
* updates.
* @param {Object} scope Optional scope for the callback(s).
* @return {Ext.promise.Promise} Promise that is fulfilled with the callback return
* value or rejected with any error thrown by the callback.
*/
then: function (onFulfilled, onRejected, onProgress, scope) {
var ref;
if (arguments.length === 1 && Ext.isObject(arguments[0])) {
ref = arguments[0];
onFulfilled = ref.success;
onRejected = ref.failure;
onProgress = ref.progress;
scope = ref.scope;
}
if (scope) {
if (onFulfilled) {
onFulfilled = Ext.Function.bind(onFulfilled, scope);
}
if (onRejected) {
onRejected = Ext.Function.bind(onRejected, scope);
}
if (onProgress) {
onProgress = Ext.Function.bind(onProgress, scope);
}
}
return this.owner.then(onFulfilled, onRejected, onProgress);
},
/**
* Attaches an onRejected callback that will be notified if this Promise is rejected.
*
* The callback can subsequently transform the reason that was rejected. Each call to
* `otherwise` returns a new Promise of that transformed value; i.e., a Promise that
* is resolved with the original resolved value, or resolved with the callback return
* value or rejected with any error thrown by the callback.
*
* @param {Function} onRejected Callback to execute to transform a rejection reason.
* @param {Object} scope Optional scope for the callback.
* @return {Ext.promise.Promise} Promise of the transformed future value.
*/
otherwise: function (onRejected, scope) {
var ref;
if (arguments.length === 1 && Ext.isObject(arguments[0])) {
ref = arguments[0];
onRejected = ref.fn;
scope = ref.scope;
}
if (scope != null) {
onRejected = Ext.Function.bind(onRejected, scope);
}
return this.owner.then(null, onRejected);
},
/**
* Attaches an onCompleted callback that will be notified when this Promise is completed.
*
* Similar to `finally` in `try... catch... finally`.
*
* NOTE: The specified callback does not affect the resulting Promise's outcome; any
* return value is ignored and any Error is rethrown.
*
* @param {Function} onCompleted Callback to execute when the Promise is resolved or
* rejected.
* @param {Object} scope Optional scope for the callback.
* @return {Ext.promise.Promise} A new "pass-through" Promise that is resolved with
* the original value or rejected with the original reason.
*/
always: function (onCompleted, scope) {
var ref;
if (arguments.length === 1 && Ext.isObject(arguments[0])) {
ref = arguments[0];
onCompleted = ref.fn;
scope = ref.scope;
}
if (scope != null) {
onCompleted = Ext.Function.bind(onCompleted, scope);
}
return this.owner.then(function (value) {
debugger
try {
onCompleted();
}
catch (e) {
ExtPromise.rethrowError(e);
}
return value;
}, function (reason) {
try {
onCompleted();
}
catch (e) {
ExtPromise.rethrowError(e);
}
throw reason;
});
},
/**
* Terminates a Promise chain, ensuring that unhandled rejections will be rethrown as
* Errors.
*
* One of the pitfalls of interacting with Promise-based APIs is the tendency for
* important errors to be silently swallowed unless an explicit rejection handler is
* specified.
*
* For example:
*
* promise.then(function () {
* // logic in your callback throws an error and it is interpreted as a
* // rejection. throw new Error("Boom!");
* });
*
* // The Error was not handled by the Promise chain and is silently swallowed.
*
* This problem can be addressed by terminating the Promise chain with the done()
* method:
*
* promise.then(function () {
* // logic in your callback throws an error and it is interpreted as a
* // rejection. throw new Error("Boom!");
* }).done();
*
* // The Error was not handled by the Promise chain and is rethrown by done() on
* // the next tick.
*
* The `done()` method ensures that any unhandled rejections are rethrown as Errors.
*/
done: function () {
this.owner.then(null, ExtPromise.rethrowError);
},
/**
* Cancels this Promise if it is still pending, triggering a rejection with a
* `{@link #CancellationError}` that will propagate to any Promises originating from
* this Promise.
*
* NOTE: Cancellation only propagates to Promises that branch from the target Promise.
* It does not traverse back up to parent branches, as this would reject nodes from
* which other Promises may have branched, causing unintended side-effects.
*
* @param {Error} reason Cancellation reason.
*/
cancel: function (reason) {
if (reason == null) {
reason = null;
}
this.owner.reject(new this.self.CancellationError(reason));
},
/**
* Logs the resolution or rejection of this Promise with the specified category and
* optional identifier. Messages are logged via all registered custom logger functions.
*
* @param {String} identifier An optional identifier to incorporate into the
* resulting log entry.
*
* @return {Ext.promise.Promise} A new "pass-through" Promise that is resolved with
* the original value or rejected with the original reason.
*/
log: function (identifier) {
if (identifier == null) {
identifier = '';
}
return this._owner.then(function (value) {
Ext.log("" + (identifier || 'Promise') + " resolved with value: " + value);
return value;
}, function (reason) {
Ext.log("" + (identifier || 'Promise') + " rejected with reason: " + reason);
throw reason;
});
}
}},
function (ExtPromise) {
ExtPromise._ready();
});

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Ext.define('Voyant.VoyantApp', {
extend: 'Ext.app.Application',
mixins: ['Voyant.util.Deferrable','Voyant.util.Localization','Voyant.util.Api','Voyant.util.Colors'],
requires: ['Voyant.util.ResponseError'],
name: 'VoyantApp',
statics: {
i18n: {
},
api: {
palette: 'default',
categories: 'auto',
lang: undefined,
debug: undefined
}
},
config: {
baseUrl: undefined,
tromboneUrl: undefined,
categoriesManager: undefined
},
constructor: function(config) {
this.setBaseUrl(this.config.baseUrl);
// set the Trombone URL from the baseURL // TODO: maybe allow this to be overridden
this.setTromboneUrl(this.config.baseUrl+'trombone');
// set the application for the Corpus so that we can use a simple constructor
Voyant.application = this;
this.mixins['Voyant.util.Api'].constructor.apply(this, arguments);
this.mixins['Voyant.util.Colors'].constructor.apply(this, arguments);
this.setCategoriesManager(new Spyral.Categories());
// inheritance/mixin hack
// var catProps = Object.getOwnPropertyNames(categories).concat(Object.getOwnPropertyNames(Object.getPrototypeOf(categories)));
// catProps.forEach(function(propName) {
// if (this[propName] === undefined) {
// if (typeof categories[propName] === 'function') {
// this[propName] = categories[propName].bind(this);
// } else {
// this[propName] = categories[propName];
// }
// }
// }, this)
this.getCategoriesManager().addFeature('color');
this.getCategoriesManager().addFeature('font', '"Palatino Linotype", "Book Antiqua", Palatino, serif');
// call the parent constructor
this.callParent(arguments);
// override Voyant.util.Colors methods to add palette api param
var _getColor = this.getColor;
this.getColor = function(index, returnHex) {
return _getColor.apply(this, [this.getApiParam('palette'), index, returnHex]);
}
var _getColorForTerm = this.getColorForTerm;
this.getColorForTerm = function(term, returnHex) {
return _getColorForTerm.apply(this, [this.getApiParam('palette'), term, returnHex]);
}
},
getBaseUrl: function() {
var baseUrl = this.callParent();
return baseUrl.indexOf("//")==0 ? location.protocol+baseUrl : baseUrl;
},
getBaseUrlFull: function() {
return window.location.origin+this.getBaseUrl(); // maybe doesn't work in all browsers?
},
getRelativeUrl: function() {
var url = window.location.pathname.substring(this.getBaseUrl().length);
var relative = "";
for (var i=0, len=url.split("/").length-1; i<len; i++) {
relative+="../"
}
return relative;
},
getTools: function() {
return [{type: 'maximize'},{type: 'help'}]
},
launch: function() {
Ext.tip.QuickTipManager.init();
Ext.apply(Ext.tip.QuickTipManager.getQuickTip(), {
showDelay: 50 // shorten the delay before showing
});
this.callParent(arguments);
},
tromboneCall: function(config) {
var config = config ? config : {};
Ext.applyIf(config, {
url: this.getTromboneUrl()
});
if (!config.success && !config.failure && !config.callback) {
Ext.applyIf(config, {
url: this.getTromboneUrl(),
scope: this,
callback: function(response, success, options) {
this.dispatchEvent(config.tool+"Loaded", response, success, options)
}
});
};
Ext.Ajax.request(config);
},
getViewport: function() {
return Ext.ComponentQuery.query('viewport')[0];
},
dispatchEvent: function(eventName, src) {
var viewport = this.getViewport();
var panels = viewport.query("panel,chart");
var isHeard = false;
// tell the app
if (this.hasListener && this.hasListener(eventName)) {
this.fireEvent.apply(this, arguments);
isHeard = true
}
// tell the panels, except the current one
for (var i=0; i<panels.length; i++) {
if (panels[i].hasListener && panels[i].hasListener(eventName)) {
if (src && src.getId && panels[i].getId && src.getId()==panels[i].getId()) {
continue; // don't send to self
}
isHeard = true;
panels[i].fireEvent.apply(panels[i], arguments);
}
}
if (!isHeard) {
// let the application know that we have an unhandledEvent
var args = ["unhandledEvent", src, eventName];
for (var i=2; i<arguments.length; i++) {args.push(arguments[i])}
this.fireEvent.apply(this, args);
}
},
showResponseError: function(config, response) {
this.showError(Ext.create("Voyant.util.ResponseError", {msg: (Ext.isString(config) ? config : config.msg), response: response}))
},
showError: function(config, response) {
if (config instanceof Voyant.util.ResponseError) {
config = {
message: config.getMsg()+"<p class='error'>\n"+config.getError()+" … "+
"<a href='#' onclick=\"window.open('').document.write(unescape('<pre>"+escape(config.getDetails())+"</pre>')); return false;\">more</a></p>"
}
} else if (config instanceof Ext.data.operation.Operation) {
return this.showError(Ext.create("Voyant.util.ResponseError", config.getError()))
} else {
if (Ext.isString(config)) {
config = {message: config}
} else if (Ext.isObject(config)) {
if (config.responseText) {
// rebundle as error (without nice message)
return this.showResponseError(config.statusText, config);
} else if (config.statusText) {
return this.showResponseError(config.statusText, config)
}
}
// maybe handle other forms
}
Ext.applyIf(config, {
title: this.localize("error"),
buttons: Ext.Msg.OK,
icon: Ext.MessageBox.ERROR,
autoScroll: true
})
Ext.Msg.show(config);
},
getToolConfigFromToolXtype: function(xtype) {
cls = Ext.ClassManager.getByAlias("widget."+xtype);
return {
xtype: xtype,
title: this._localizeClass(cls, "title"),
tooltip: { // this needs to be an object for compatibility (other configs can be changed)
text: this._localizeClass(cls, "helpTip")
},
glyph: cls && cls.glyph ? cls.glyph : 'xf12e@FontAwesome'
};
},
/**
* Opens a URL in a new window (handling the case when popup windows aren't allowed).
* @param {String} url The URL to open.
* @private
*/
openUrl: function(url) {
var win = window.open(url);
if (!win) { // popup blocked
Ext.Msg.show({
title: "Popup Blocked",
buttonText: {ok: "Close"},
icon: Ext.MessageBox.INFO,
message: "A popup window was blocked. <a href='"+url+"' target='_blank' class='link'>Click here</a> to open the new window.",
buttons: Ext.Msg.OK
});
}
}
});

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src/Voyant-master/src/main/webapp/app/VoyantCorpusApp.js
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Ext.define('Voyant.VoyantCorpusApp', {
extend: 'Voyant.VoyantApp',
name: 'VoyantCorpusApp',
requires: ['Voyant.panel.CorpusSet','Voyant.data.model.Corpus','Voyant.panel.VoyantHeader', 'Voyant.panel.VoyantFooter', 'Voyant.panel.CorpusCreator', 'Voyant.panel.Cirrus', 'Voyant.panel.Summary', 'Voyant.panel.DreamScape', 'Voyant.panel.CorpusTerms', 'Voyant.panel.Reader', 'Voyant.panel.Documents', 'Voyant.panel.Trends', 'Voyant.panel.Contexts', 'Voyant.panel.DocumentTerms','Voyant.panel.CorpusCollocates','Voyant.panel.CollocatesGraph','Voyant.panel.Phrases','Voyant.panel.ScatterPlot','Voyant.panel.TopicContexts','Voyant.panel.TermsRadio','Voyant.panel.TermsBerry'],
statics: {
i18n: {
},
api: {
toolFlow: undefined
}
},
constructor: function() {
this.mixins['Voyant.util.Api'].constructor.apply(this, arguments);
this.callParent(arguments);
},
config: {
corpus: undefined,
corpusAccess: undefined,
moreTools: [{
i18n: 'moreToolsScaleCorpus',
glyph: 'xf065@FontAwesome',
items: ['cirrus','corpusterms','bubblelines','correlations','corpuscollocates','dreamscape','loom','mandala','microsearch','streamgraph','phrases','documents','summary','trends','scatterplot','termsradio','topics','veliza','wordtree']
},{
i18n: 'moreToolsScaleDocument',
glyph: 'xf066@FontAwesome',
items: ['bubbles','cirrus','contexts','documentterms','reader','textualarc','trends','knots','topics']
},{
i18n: 'moreToolsTypeViz',
glyph: 'xf06e@FontAwesome',
items: ['cirrus','bubblelines','bubbles','collocatesgraph','dreamscape','loom','knots','mandala','microsearch','streamgraph','scatterplot','textualarc','trends','termsberry','termsradio','wordtree']
},{
i18n: 'moreToolsTypeGrid',
glyph: 'xf0ce@FontAwesome',
items: ['corpusterms','corpuscollocates','correlations','phrases','contexts','documentterms','documents','topics']
},{
i18n: 'moreToolsTypeOther',
glyph: 'xf035@FontAwesome',
items: ['reader','summary','veliza']
}]
},
launch: function(config) {
this.callParent(arguments);
if (this.hasQueryToLoad()) {
var queryParams = Ext.Object.fromQueryString(document.location.search);
if (!queryParams.corpus && this.getCorpusId && this.getCorpusId()) {
queryParams.corpus = this.getCorpusId();
}
if (config && config.useCache) { // for large corpora
queryParams.useCache = config.useCache;
}
this.loadCorpusFromParams(queryParams);
if (queryParams.palette) {
if (queryParams.palette.indexOf(",")>-1) { // treat as inline
var palette = Ext.decode(queryParams.palette);
this.addColorPalette(queryParams.palette, palette);
} else {
this.loadColorPaletteForCorpus(queryParams.corpus, queryParams.palette);
}
}
} else {
var viewport = this.getViewport();
if (viewport) {
var corpuscreator = viewport.down("corpuscreator")
if (corpuscreator) {
var toast = corpuscreator.toastInfo({
html: this.localize('didYouKnowText'),
title: this.localize('didYouKnow'),
anchor: corpuscreator.down("textareafield"),
align: 'tr',
listeners: {
beforeclose: {
fn: function() {
this.getHeader().getTools().forEach(function(tool) {
if (tool.type=="gear" || tool.type=='help') {
tool.getEl().frame("#ff0000", 1, { duration: 3000 })
}
});
},
scope: corpuscreator
}
}
});
}
}
}
},
loadCorpusFromParams: function(params) {
var me = this;
var view = me.getViewport()
view.mask(this.localize("fetchingCorpus"));
if (params.archive) { // fix a few URLs we know about
if (Ext.isString(params.archive)) {params.archive=[params.archive]}
params.archive = params.archive.map(function(archive) {
return archive.replace('/blogs.sub.uni-hamburg.de/hup/lhn/', '/wikis.sub.uni-hamburg.de/lhn/index.php/')
.replace('/hup.sub.uni-hamburg.de/', '/wikis.sub.uni-hamburg.de/')
})
}
this.validateCorpusLoadParams(params);
new Voyant.data.model.Corpus(params).then(function(corpus) {
view.unmask();
me.setCorpus(corpus);
if (me.validateCorpusAccess()) {
me.dispatchEvent('loadedCorpus', this, corpus);
}
}).otherwise(function() {
view.unmask();
})
},
validateCorpusLoadParams: function(params) {
// leave untouched by default, this can be overridden
},
validateCorpusAccess: function() {
var me = this, view = me.getViewport(), corpus = this.getCorpus();
if (corpus && corpus.requiresPassword() && !me.getViewport().query("panel").every(function(panel) {
return !panel.isConsumptive
})) {
var noPasswordAccess = corpus.getNoPasswordAccess();
var passWin = Ext.create('Ext.window.Window', {
title: me.localize('passwordRequiredTitle'),
layout: 'fit',
items: {
padding: 10,
flex: 1,
width: 300,
layout: {
type: 'vbox',
align: 'stretch'
},
items: [
{
html: '<p>'+me.localize('passwordRequiredMessage')+'</p>' + (noPasswordAccess=='NONCONSUMPTIVE' ? '<p>'+me.localize('nonConsumptiveMessage')+"</p>" : "")+'</p>'
},{
xtype: 'textfield',
fieldLabel: me.localize('password')
}
],
bbar: {
// ui: 'footer',
layout: {pack: 'center'},
items: [{
text: me.localize('passwordValidateButton'),
ui: 'default',
handler: function() {
var password = passWin.query("textfield")[0].getValue().trim();
if (password.length==0) {
me.showError({
message: me.localize('noPasswordGiven')
})
return;
}
passWin.mask();
Ext.Ajax.request({
url: me.getTromboneUrl(),
params: {
corpus: corpus.getId(),
passwordForSession: password
},
method: 'POST',
success: function(result, request) {
passWin.unmask();
var access = result.responseText;
if (access=="ADMIN" || access=="ACCESS") {
passWin.close();
view.unmask();
me.setCorpusAccess(access);
me.dispatchEvent('loadedCorpus', this, corpus);
}
else {
me.showError({
message: me.localize('badPassword')
})
}
},
failure: function(result, request) {
passWin.unmask();
me.showError({
message: me.localize('passwordValidationError')
})
}
});
}
},{
text: me.localize('nonConsumptiveButton'),
hidden: corpus.getNoPasswordAccess()=='NONE',
handler: function() {
passWin.mask();
Ext.Ajax.request({
url: me.getTromboneUrl(),
params: {
corpus: corpus.getId(),
passwordForSessionRemove: true
},
method: 'POST',
callback: function(result, request) { // do this even if request fails
passWin.unmask();
passWin.close();
view.unmask();
me.dispatchEvent('loadedCorpus', me, corpus);
}
});
}
}]
}
}
}).show();
return false;
} else {
return true
}
},
hasQueryToLoad: function(params) {
if (!params) {
params = Ext.Object.fromQueryString(document.location.search);
}
return params.corpus || params.input || (this.getCorpusId && this.getCorpusId()); // TODO: should this include "archive" from V1?
},
loadColorPaletteForCorpus: function(corpusId, paletteId) {
Ext.Ajax.request({
url: this.getTromboneUrl(),
params: {
tool: 'resource.StoredResource',
retrieveResourceId: paletteId,
corpus: corpusId
},
success: function(response, req) {
var json = Ext.util.JSON.decode(response.responseText);
var value = json.storedResource.resource;
var palette = Ext.decode(value);
this.addColorPalette(paletteId, palette);
},
failure: function(response) {
this.setApiParam('palette', undefined);
},
scope: this
});
},
loadCategoryData: function(id) {
return this.getCategoriesManager().load(id, {
trombone: Voyant.application.getTromboneUrl()
});
},
saveCategoryData: function(data) {
return this.getCategoriesManager().save({}, {
trombone: Voyant.application.getTromboneUrl()
});
},
listeners: {
loadedCorpus: function(src, corpus) {
this.setCorpus(corpus);
// let's load the categories based on the corpus
if (this.getApiParam("categories")) {
this.loadCategoryData(this.getApiParam("categories")).then(function() {
// assign colors
for (var category in this.getCategoriesManager().getCategories()) {
var color = this.getCategoriesManager().getCategoryFeature(category, 'color');
if (color !== undefined) {
var rgb = this.hexToRgb(color);
var terms = this.getCategoriesManager().getCategoryTerms(category);
for (var i = 0; i < terms.length; i++) {
this.setColorForTerm(terms[i], rgb);
}
}
}
}.bind(this));
}
this.on("unhandledEvent", function(src, eventName, data) {
var url = this.getBaseUrl() + '?corpus='+corpus.getAliasOrId();
var api = this.getModifiedApiParams() || {}; // use application, not tool
delete api.view; // make sure we show default view
if (eventName=='termsClicked') {
// data can be a simple array of terms or an array of term objects
if (Ext.isArray(data) && "term" in data[0] && "docIndex" in data[0]) {
let termsObj = {};
let docIndObj = {};
data.forEach(function(datum) {
termsObj[datum.term]=true;
docIndObj[datum.docIndex]=true;
})
api.query=Object.keys(termsObj);
api.docIndex=Object.keys(docIndObj);
} else {
api.query=data;
}
}
else if (eventName=='documentsClicked') {
var docIndex = [];
if (data.forEach) {
data.forEach(function(doc) {
docIndex.push(doc.getIndex())
})
}
api.docIndex=docIndex
}
else if (eventName=='corpusTermsClicked') {
if (data.map) {
api.query = data.map(function(corpusTerm) {return corpusTerm.getTerm()});
}
}
else if (eventName=='documentTermsClicked') {
if (data.map) {
api.query = data.map(function(documentTerm) {return documentTerm.getTerm()});
api.docIndex = data.map(function(documentTerm) {return documentTerm.getDocIndex()});
}
}
else {
if (console) {console.warn("Unhandled event: "+eventName, data)}
return;
}
if (api.toolFlow) {
var toolFlow = Ext.Array.from(api.toolFlow.split(","));
api.view = toolFlow.shift();
if (toolFlow.length>0) {
api.toolFlow = toolFlow.join(",");
} else {
delete api.toolFlow
}
}
url += "&"+Ext.Object.toQueryString(api)
this.openUrl(url)
})
}
}
});

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src/Voyant-master/src/main/webapp/app/VoyantCorpusToolsetApp.js
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Ext.define('Voyant.panel.DocumentClusters', {
extend: 'Ext.panel.Panel',
alias: 'widget.documentclusters',
title: "Document Clusters"
})
// extend: 'Ext.panel.Panel',
// alias: 'widget.rezoviz',
// title: "RezoViz"
//})
Ext.define('Voyant.VoyantCorpusToolsetApp', {
extend : 'Voyant.VoyantCorpusApp',
requires: ['Voyant.panel.Contexts','Voyant.panel.CollocatesGraph','Voyant.panel.Trends'],
name : 'VoyantCorpusToolsetApp',
launch: function() {
Ext.create('Ext.container.Viewport', {
layout: 'border',
items: [{
region: 'south',
xtype: 'voyantfooter'
}, {
xtype: 'tabpanel',
region: 'center',
split: true,
items: [{
xtype: 'cirrus',
collapsible: true
},{
xtype: 'corpusterms',
collapsible: true
},{
xtype: 'documents',
collapsible: true
},{
xtype: 'rezoviz',
collapsible: true
},{
xtype: 'trends',
collapsible: true
},{
xtype: 'documentclusters',
collapsible: true
}],
flex: 6
}]
});
this.callParent(arguments);
}
});

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src/Voyant-master/src/main/webapp/app/VoyantDefaultApp.js
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Ext.define('Voyant.VoyantDefaultApp', {
extend : 'Voyant.VoyantCorpusApp',
mixins: ['Voyant.util.Api'],
name : 'VoyantDefaultApp',
constructor: function() {
this.mixins['Voyant.util.Api'].constructor.apply(this, arguments);
this.callParent(arguments);
},
statics: {
i18n: {
},
api: {
view: 'corpusset',
stopList: 'auto',
panels: undefined,
rtl: undefined
}
},
listeners: {
loadedCorpus: function(src, corpus) {
this.viewport.down('voyantheader').collapse();
this.viewport.down('#toolsContainer').setActiveItem(1);
var corpusId = this.getCorpusId && this.getCorpusId() ? this.getCorpusId() : undefined;
if (window.history.pushState && !corpusId) {
// add the corpusId to the url
var corpusId = corpus.getAliasOrId();
var queryParams = Ext.Object.fromQueryString(document.location.search);
var url = this.getBaseUrl()+'?corpus='+corpusId;
for (var key in queryParams) {
if (key !== 'corpus') {
var vals = Ext.isString(queryParams[key]) ? [queryParams[key]] : queryParams[key];
if (Ext.isArray(vals)) {
vals.forEach(function(val) {
url += '&'+key+'='+val;
})
}
}
}
window.history.pushState({
corpus: corpusId
}, 'Corpus: '+corpusId, url);
}
}
},
getViewComponent: function() {
return this.viewport.down('#toolsContainer-main')
},
launch: function() {
var queryParams = Ext.Object.fromQueryString(document.location.search) || {};
var view = this.getApiParam('view', 'CorpusSet');
var xtype = view.toLowerCase();
if (!Ext.ClassManager.getByAlias("widget."+xtype) || queryParams.noskin) {
Ext.Msg.show({
title: this.localize('noViewErrorTitle'),
message: new Ext.Template(this.localize(queryParams.noskin ? 'noViewKnownErrorTpl' : 'noViewErrorTpl')).apply({
view: queryParams.noskin ? queryParams.noskin : view,
additional: queryParams.noskin && queryParams.noskin == 'convert' ? this.localize(queryParams.noskin+'SkinMsg') : ''
}),
buttons: Ext.Msg.OK,
icon: Ext.Msg.ERROR
});
xtype = 'corpusset'; // switch to default view
}
var SPLIT_SIZE = 5;
this.viewport = Ext.create('Ext.container.Viewport', {
layout: 'border',
rtl: (this.getApiParam('rtl')!==undefined || Voyant.util.Localization.LANGUAGE=="ar" || Voyant.util.Localization.LANGUAGE=="he"),
items: [{
xtype: 'voyantheader',
region: 'north'
},{
region: 'south',
xtype: 'voyantfooter'
},{
region: 'center',
layout: 'card',
itemId: 'toolsContainer',
activeItem: 0,
items: [{
xtype : 'container',
layout: {
type: 'vbox',
pack: 'center',
align: 'center'
},
items: [{
xtype: 'corpuscreator'
},{
xtype: 'container',
width: 800,
html: "<div id='voyantIs' style='font-style: italic; text-align: center; margin-top: 10px;'><div>"+this.localize('voyantIs')+"</div>" + (this.localize('translatedBy').indexOf("English") == -1 ? "<div>"+this.localize('translatedBy')+"</div>" : "") +
(this.getCorpusCreatorText && this.getCorpusCreatorText().trim().length>0 ? "<div id='corpusCreatorText'>"+this.getCorpusCreatorText()+"</div>" : "")
}]
},{
layout: 'fit',
itemId: 'toolsContainer-main',
items: {
xtype: xtype
}
}]
}]
});
this.callParent(arguments);
}
});

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src/Voyant-master/src/main/webapp/app/VoyantDocumentToolsetApp.js
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Ext.define('Voyant.panel.MoreLikeThis', {
extend: 'Ext.panel.Panel',
alias: 'widget.morelikethis',
title: "More Like this"
})
Ext.define('Voyant.VoyantDocumentToolsetApp', {
extend : 'Voyant.VoyantCorpusApp',
requires: ['Voyant.panel.Contexts','Voyant.panel.CollocatesGraph','Voyant.panel.Trends'],
name : 'VoyantDocumentToolsetApp',
launch: function() {
Ext.create('Ext.container.Viewport', {
layout: 'border',
items: [{
region: 'south',
xtype: 'voyantfooter'
}, {
xtype: 'tabpanel',
region: 'center',
split: true,
items: [{
xtype: 'cirrus',
collapsible: true
},{
xtype: 'documentterms',
collapsible: true
},{
xtype: 'contexts',
collapsible: true
},{
xtype: 'collocatesgraph',
collapsible: true
},{
xtype: 'trends',
collapsible: true
},{
xtype: 'morelikethis',
collapsible: true
}],
flex: 6
}]
});
this.callParent(arguments);
}
});

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src/Voyant-master/src/main/webapp/app/VoyantNotebookApp.js
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Ext.define('Voyant.VoyantNotebookApp', {
extend : 'Voyant.VoyantApp',
requires: ['Voyant.panel.VoyantFooter','Voyant.notebook.Notebook','Voyant.data.model.Corpus','Voyant.notebook.util.Show'],
name : 'VoyantNotebookApp',
launch: function() {
Ext.create('Ext.container.Viewport', {
layout: 'border',
items: [{
xtype: 'notebook',
region: 'center'
},{
xtype: 'voyantfooter',
region: 'south'
}]
});
this.callParent(arguments);
}
});

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src/Voyant-master/src/main/webapp/app/VoyantToolApp.js
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Ext.define('Voyant.VoyantToolApp', {
extend : 'Voyant.VoyantCorpusApp',
name : 'VoyantToolApp',
statics: {
api: {
minimal: undefined,
embeddedApiId: undefined
}
},
launch: function() {
var items = [], me = this;
if (!this.getApiParam('minimal')) {
items.push({
region: 'south',
xtype: 'voyantfooter'
})
};
items.push({
region: 'center',
layout: 'fit',
itemId: 'toolcontainer',
items: {
xtype: this.getApiParam('embeddedApiId') ? 'container' : this.getTool()
},
listeners: {
afterrender: function(container) {
if (me.getApiParam('embeddedApiId')) {
var dfd = me.getDeferred(this);
container.mask(this.localize('loadingConfiguration'));
Ext.Ajax.request({
url: me.getTromboneUrl(),
params: {
tool: 'resource.StoredResource',
retrieveResourceId: this.getApiParam('embeddedApiId')
}
}).then(function(response) {
dfd.resolve();
var json = Ext.util.JSON.decode(response.responseText);
var configString = decodeURIComponent(json.storedResource.resource);
var config = Ext.decode(configString);
var tool = Ext.create({xtype: me.getTool()});
tool.setApiParams(config);
container.unmask();
container.remove(container.down('container'));
container.add(tool);
if (config.corpus) {
me.loadCorpusFromParams(config);
}
}).otherwise(function(response) {
if (me.getTargetEl) {
Voyant.notebook.util.Show.TARGET = me.getTargetEl();
showError(response);
}
Voyant.application.showError(response);
dfd.reject();
})
}
},
scope: this
}
});
Ext.create('Ext.container.Viewport', {
layout: 'border',
items: items
});
this.callParent(arguments);
}
});

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src/Voyant-master/src/main/webapp/app/data/model/AnalysisToken.js
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Ext.define('Voyant.data.model.AnalysisToken', {
extend: 'Ext.data.Model',
idProperty: 'term',
fields: [
{name: 'term'},
{name: 'rawFreq', type: 'int'},
{name: 'relativeFreq', type: 'number'},
{name: 'cluster', type: 'int'},
{name: 'clusterCenter', type: 'boolean'},
{name: 'vector'}
]
});

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src/Voyant-master/src/main/webapp/app/data/model/Context.js
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Ext.define('Voyant.data.model.Context', {
extend: 'Ext.data.Model',
fields: [
{name: 'id'},
{name: 'docIndex', 'type': 'int'},
{name: 'position', 'type': 'int'},
{name: 'docId'},
{name: 'left'},
{name: 'keyword'},
{name: 'term'},
{name: 'right'}
],
getDocIndex: function() {return this.get("docIndex")},
getLeft: function() {return this.get("left")},
getMiddle: function() {return this.get("middle")},
getHighlightedMiddle: function() {return "<span class='keyword'>"+this.getMiddle()+"</span>"},
getRight: function() {return this.get("right")},
getPosition: function() {return this.get("position")},
getHighlightedContext: function() {return this.getLeft()+this.getHighlightedMiddle()+this.getRight();}
});

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src/Voyant-master/src/main/webapp/app/data/model/Corpus.js
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src/Voyant-master/src/main/webapp/app/data/model/CorpusCollocate.js
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Ext.define('Voyant.data.model.CorpusCollocate', {
extend: 'Ext.data.Model',
fields: [
{name: 'term'},
{name: 'rawFreq', type: 'int'},
{name: 'contextTerm'},
{name: 'contextTermRawFreq', type: 'int'}
],
getTerm: function() {return this.getKeyword()},
getRawFreq: function() {return this.getKeywordRawFreq()},
getKeyword: function() {return this.get('term');},
getKeywordRawFreq: function() {return this.get('rawFreq');},
getContextTerm: function() {return this.get('contextTerm');},
getContextTermRawFreq: function() {return this.get('contextTermRawFreq');}
});

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src/Voyant-master/src/main/webapp/app/data/model/CorpusFacet.js
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Ext.define('Voyant.data.model.CorpusFacet', {
extend: 'Ext.data.Model',
idProperty: 'label',
fields: [
{name: 'facet'},
{name: 'label'},
{name: 'inDocumentsCount', type: 'int'}
],
getLabel: function() {
return this.get('label')
},
getFacet: function() {
return this.get('facet')
},
getInDocumentsCount: function() {
return this.get('inDocumentsCount')
}
});

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src/Voyant-master/src/main/webapp/app/data/model/CorpusNgram.js
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Ext.define('Voyant.data.model.CorpusNgram', {
extend: 'Ext.data.Model',
fields: [
{name: 'term'},
{name: 'length', type: 'int'},
{name: 'rawFreq', type: 'int'},
{name: 'distributions'}
],
getTerm: function() {return this.get('term');}
});

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src/Voyant-master/src/main/webapp/app/data/model/CorpusTerm.js
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/*
* Corpus Term
*/
Ext.define('Voyant.data.model.CorpusTerm', {
extend: 'Ext.data.Model',
idProperty: 'term', // should be unique
fields: [
{name: 'id'},
{name: 'rawFreq', type: 'int'},
{name: 'inDocumentsCount', type: 'int'},
{name: 'relativeFreq', type: 'float'},
{name: 'relativePeakedness', type: 'float'},
{name: 'relativeSkewness', type: 'float'},
{name: 'comparisonRelativeFreqDifference', type: 'float'},
{name: 'distributions'},
{name: 'typeTokenRatio-lexical', type: 'float', calculate: function(data) {
return data['typesCount-lexical']/data['tokensCount-lexical'];
}}
],
/**
* Get the term.
* @returns {String} Returns the term.
*/
getTerm: function() {
return this.get('term');
},
/**
* Get the term's raw frequency.
* @returns {Number} Returns the term's frequency.
*/
getRawFreq: function() {
return parseInt(this.get('rawFreq'));
},
getInDocumentsCount: function() {
return parseInt(this.get('inDocumentsCount'));
},
getDistributions: function() {
return this.get('distributions');
},
/**
* Show a one line summary of this term.
*/
show: function(config) {
show(this.getString(config))
},
getString: function() {
return this.getTerm()+": "+this.getRawFreq();
}
});

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src/Voyant-master/src/main/webapp/app/data/model/Dimension.js
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Ext.define('Voyant.data.model.Dimension', {
extend: 'Ext.data.Model',
fields: [
{name: 'percentage', type: 'number'}
]
});

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src/Voyant-master/src/main/webapp/app/data/model/Document.js
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Ext.define('Voyant.data.model.Document', {
extend: 'Ext.data.Model',
//requires: ['Voyant.data.store.DocumentTerms'],
fields: [
{name: 'corpus'},
{name: 'id'},
{name: 'author'},
{name: 'pubDate'},
{name: 'publisher'},
{name: 'pubPlace'},
{name: 'keyword'},
{name: 'collection'},
{name: 'index', type: 'int'},
{name: 'tokensCount-lexical', type: 'int'},
{name: 'typesCount-lexical', type: 'int'},
{name: 'typeTokenRatio-lexical', type: 'float', calculate: function(data) {
return data['typesCount-lexical']/data['tokensCount-lexical'];
}},
{name: 'lastTokenStartOffset-lexical', type: 'int'},
{name: 'title'},
{name: 'language', convert: function(data) {return Ext.isEmpty(data) ? '' : data;}},
{name: 'sentencesCount', type: 'int'},
{name: 'averageWordsPerSentence', type: 'float', calculate: function(data) {
return data['sentencesCount'] ? data['tokensCount-lexical'] / data['sentencesCount'] : 0;
}},
{name: 'css', type: 'string'}
],
getLexicalTokensCount: function() {
return this.get('tokensCount-lexical')
},
getLexicalTypeTokenRatio: function() {
return this.get('typeTokenRatio-lexical')
},
loadDocumentTerms: function(config) {
if (this.then) {
return Voyant.application.getDeferredNestedPromise(this, arguments);
} else {
var dfd = Voyant.application.getDeferred(this);
config = config || {};
if (Ext.isNumber(config)) {
config = {limit: config};
}
Ext.applyIf(config, {
limit: 0
})
var documentTerms = this.getDocumentTerms();
documentTerms.load({
params: config,
callback: function(records, operation, success) {
if (success) {
dfd.resolve(documentTerms)
} else {
dfd.reject(operation)
}
}
})
return dfd.promise
}
},
loadTokens: function(config) {
if (this.then) {
return Voyant.application.getDeferredNestedPromise(this, arguments);
} else {
var dfd = Voyant.application.getDeferred(this);
config = config || {};
if (Ext.isNumber(config)) {
config = {limit: config};
}
Ext.applyIf(config, {
limit: 0
})
var tokens = this.getTokens({});
tokens.load({
params: config,
callback: function(records, operation, success) {
if (success) {
dfd.resolve(tokens)
} else {
dfd.reject(operation)
}
}
})
return dfd.promise
}
},
getTokens: function(config) {
if (this.then) {
return Voyant.application.getDeferredNestedPromise(this, arguments);
} else {
config = config || {};
Ext.applyIf(config, {
proxy: {}
});
Ext.applyIf(config.proxy, {
extraParams: {}
})
Ext.applyIf(config.proxy.extraParams, {
docIndex: this.get('index')
})
Ext.apply(config, {
docId: this.get('id')
});
return this.get('corpus').getTokens(config);
}
},
getDocumentTerms: function(config) {
if (this.then) {
return Voyant.application.getDeferredNestedPromise(this, arguments);
} else {
config = config || {};
Ext.applyIf(config, {
proxy: {}
});
Ext.applyIf(config.proxy, {
extraParams: {}
})
Ext.applyIf(config.proxy.extraParams, {
docIndex: this.get('index')
})
if (config.corpus) {
return config.corpus.getDocumentTerms(config);
}
return this.get('corpus').getDocumentTerms(config); // FIXME: when does this happen?
}
},
getIndex: function() {
return this.get('index');
},
getId: function() {
return this.get('id');
},
getFullLabel: function() {
var author = this.getAuthor();
return this.getTitle() + (author ? "("+author+")" : ''); // TODO: complete full label
},
getTitle: function() {
var title = this.get('title');
if (title === undefined) title = '';
title = Ext.isArray(title) ? title.join("; ") : title;
title = title.trim().replace(/\s+/g, ' '); // remove excess whitespace
return title;
},
getTruncated: function(string, max) {
if (string.length > max) {
// maybe a file or URL?
var slash = string.lastIndexOf("/");
if (slash>-1) {
string = string.substr(slash+1);
}
if (string.length>max) {
var space = string.indexOf(" ", max-5);
if (space < 0 || space > max) {
space = max;
}
string = string.substring(0, space) + "…";
}
}
return string;
},
getShortTitle: function() {
var title = this.getTitle();
title = title.replace(/\.(html?|txt|xml|docx?|pdf|rtf|\/)$/,'');
title = title.replace(/^(the|a|le|l'|un|une)\s/,'');
return this.getTruncated(title, 25);
},
getTinyTitle: function() {
return this.getTruncated(this.getShortTitle(), 10);
},
getShortLabel: function() {
var author = this.getAuthor(25);
return (parseInt(this.getIndex())+1) + ') <i>' + this.getShortTitle() + "</i>" +(author ? " ("+author+")" : '')
},
getTinyLabel: function() {
return (parseInt(this.getIndex())+1) + ') ' + this.getTinyTitle();
},
getPubDate: function() {
return this.get("pubDate");
},
getPublisher: function() {
return this.get("publisher");
},
getPubPlace: function() {
return this.get("pubPlace");
},
getKeyword: function() {
return this.getMultiple("keyword");
},
getCollection: function() {
return this.getMultiple("collection");
},
getAuthor: function(max) {
this.getMultiple("author")
},
getMultiple: function(field, max) {
var val = this.get(field) || "";
val = Ext.isArray(val) ? val.join("; ") : val;
val = val.trim().replace(/\s+/g, ' ');
return max ? this.getTruncated(val, max) : val;
},
getCorpusId: function() {
return this.get('corpus').getAliasOrId();
},
isPlainText: function() {
if (this.get("extra.Content-Type") && new RegExp("plain","i").test(this.get("extra.Content-Type"))) {
return true
}
return false;
},
getAverageWordsPerSentence: function() {
return this.get("averageWordsPerSentence");
},
show: function() {
show(this.getFullLabel())
},
getCorpus: function() {
return this.get('corpus');
},
getText: function(config) {
if (this.then) {
return Voyant.application.getDeferredNestedPromise(this, arguments);
} else {
var dfd = Voyant.application.getDeferred(this);
config = config || {};
Ext.apply(config, {
tool: 'corpus.DocumentTokens',
corpus: this.getCorpusId()
})
this.getTokens(config).then(function(tokens) {
dfd.resolve(tokens);
});
return dfd.promise
}
},
getPlainText: function(config) {
if (this.then) {
return Voyant.application.getDeferredNestedPromise(this, arguments);
} else {
config = config || {};
Ext.apply(config, {
outputFormat: "text",
template: "docTokens2text",
noOthers: true
});
return this.getText();
}
},
getLemmasArray: function(config) {
config = config || {};
config.docId = this.getId();
return this.getCorpus().getLemmasArray(config);
// if (this.then) {
// return Voyant.application.getDeferredNestedPromise(this, arguments);
// } else {
// config = config || {};
// Ext.apply(config, {
// docId: this.getId()
// });
// return this.getCorpus().getLemmasArray(config);
// }
},
getEntities: function(config) {
config = config || {};
Ext.applyIf(config, {
proxy: {}
});
Ext.applyIf(config.proxy, {
extraParams: {}
})
Ext.applyIf(config.proxy.extraParams, {
docIndex: this.get('index')
})
return Ext.create("Voyant.data.store.DocumentEntities", Ext.apply(config, {corpus: this.getCorpus(), docId: this.getId()}));
},
loadEntities: function(config) {
var me = this;
if (this.then) {
return Voyant.application.getDeferredNestedPromise(this, arguments);
} else {
var dfd = Voyant.application.getDeferred(this);
this.getEntities().load({
params: config,
callback: function(records, operation, success) {
if (success) {
dfd.resolve(records)
} else {
dfd.reject(operation.error.response);
}
}
})
return dfd.promise
}
},
getCSS: function() {
return this.get('css') || this.get('parent_css');
}
});

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src/Voyant-master/src/main/webapp/app/data/model/DocumentEntity.js
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Ext.define('Voyant.data.model.DocumentEntity', {
extend: 'Ext.data.Model',
fields: [
{name: 'term'},
{name: 'docIndex', 'type': 'int'},
{name: 'rawFreq', type: 'int'},
{name: 'type'},
{name: 'positions'}
],
getTerm: function() {return this.get('term');},
getDocIndex: function() {return this.get('docIndex')},
getRawFreq: function() {return this.get('rawFreq')},
getPositions: function() {return this.get('positions')}
});

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src/Voyant-master/src/main/webapp/app/data/model/DocumentQueryMatch.js
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Ext.define('Voyant.data.model.DocumentQueryMatch', {
extend: 'Ext.data.Model',
fields: [
{name: 'id'},
{name: 'count', 'type': 'int'},
{name: 'query'},
{name: 'distributions'}
],
getCount: function() {return this.get('count')},
getDistributions: function() {return this.get("distributions")},
getDocIds: function() {return this.get("docIds")}
});

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src/Voyant-master/src/main/webapp/app/data/model/DocumentTerm.js
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Ext.define('Voyant.data.model.DocumentTerm', {
extend: 'Ext.data.Model',
fields: [
{name: 'id'},
{name: 'term'},
{name: 'docIndex', 'type': 'int'},
{name: 'docId'},
{name: 'rawFreq', type: 'int'},
{name: 'relativeFreq', type: 'float'},
{name: 'tfidf', type: 'float'},
{name: 'zscore', type: 'float'},
{name: 'zscoreRatio', type: 'float'},
{name: 'distributions'}
],
getTerm: function() {return this.get('term');},
getDocIndex: function() {return this.get('docIndex')},
getRawFreq: function() {return this.get('rawFreq')},
getRelativeFreq: function() {return this.get('relativeFreq')},
getDistributions: function() {return this.get('distributions')}
});

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src/Voyant-master/src/main/webapp/app/data/model/PrincipalComponent.js
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Ext.define('Voyant.data.model.PrincipalComponent', {
extend: 'Ext.data.Model',
fields: [
{name: 'eigenValue', type: 'number'},
{name: 'eigenVectors'}
]
});

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src/Voyant-master/src/main/webapp/app/data/model/RelatedTerm.js
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/*
* Related Term
*/
Ext.define('Voyant.data.model.RelatedTerm', {
extend: 'Ext.data.Model',
fields: [
{name: 'source'},
{name: 'target'},
{name: 'rawFreq', type: 'int'}
],
/**
* Get the source term.
* @returns {String} Returns the term.
*/
getSource: function() {
return this.get('source');
},
/**
* Get the source term.
* @returns {String} Returns the term.
*/
getTarget: function() {
return this.get('target');
},
/**
* Show a one line summary of this term.
*/
show: function(config) {
show(this.getString(config))
},
getString: function() {
return this.getSource()+"-"+this.getTarget();
}
});

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src/Voyant-master/src/main/webapp/app/data/model/StatisticalAnalysis.js
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Ext.define('Voyant.data.model.StatisticalAnalysis', {
extend: 'Ext.data.Model',
requires: ['Voyant.data.model.PrincipalComponent', 'Voyant.data.model.Dimension', 'Voyant.data.model.AnalysisToken'],
fields: [
{name: 'id'}
// ,{name: 'dimensions', reference: 'Voyant.data.model.Dimension'}
// ,{name: 'tokens', reference: 'Voyant.data.model.AnalysisToken'}
]
// alternative access methods to "reference" or "hasMany"
,getPrincipalComponents: function() {
var pcs = [];
this.data.principalComponents.forEach(function(pc) {
pcs.push(Ext.create('Voyant.data.model.PrincipalComponent', pc));
});
return pcs;
}
,getDimensions: function() {
var dimensions = [];
this.data.dimensions.forEach(function(dim) {
dimensions.push(Ext.create('Voyant.data.model.Dimension', {percentage: dim}));
});
return dimensions;
}
,getTokens: function() {
var tokens = [];
this.data.tokens.forEach(function(tok) {
tokens.push(Ext.create('Voyant.data.model.AnalysisToken', tok));
});
return tokens;
}
// ,hasMany: [{
// name: 'dimensions', model: 'Voyant.data.model.Dimension'
// },{
// name: 'tokens', model: 'Voyant.data.model.AnalysisToken'
// }]
});

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src/Voyant-master/src/main/webapp/app/data/model/TermCorrelation.js
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/*
* Related Term
*/
Ext.define('Voyant.data.model.TermCorrelation', {
extend: 'Ext.data.Model',
fields: [
{name: 'source'},
{name: 'target'},
{name: 'correlation', type: 'float'},
{name: 'significance', type: 'float'},
{name: 'source-term', calculate: function(data) {return data.source.term}},
{name: 'target-term', calculate: function(data) {return data.target.term}},
{name: 'source-distributions', calculate: function(data) {return data.source.distributions}},
{name: 'target-distributions', calculate: function(data) {return data.target.distributions}}
],
/**
* Get the source term.
* @returns {String} Returns the term.
*/
getSource: function() {
return this.get('source');
},
/**
* Get the source term.
* @returns {String} Returns the term.
*/
getTarget: function() {
return this.get('target');
},
/**
* Show a one line summary of this term.
*/
show: function(config) {
show(this.getString(config))
},
getString: function() {
return this.getSource()+"-"+this.getTarget();
}
});

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src/Voyant-master/src/main/webapp/app/data/model/Token.js
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Ext.define('Voyant.data.model.Token', {
extend: 'Ext.data.Model',
fields: [
{name: 'id'},
{name: 'docId'},
{name: 'docIndex', type: 'int'},
{name: 'token'},
{name: 'rawFreq'},
{name: 'tokenType'},
{name: 'position', type: 'int'},
{name: 'startOffset', type: 'int'},
{name: 'endOffset', type: 'int'}
],
statics: {
getInfoFromElement: function(arg) {
if (arg && arg.getId) {
var parts = arg.getId().split("_");
return {
docIndex: parseInt(parts[1]),
position: parseInt(parts[2])
};
}
}
},
isWord: function() {
return this.getTokenType()=='lexical'; // maybe something else later?
},
isStopword: function() {
return this.get("stopword")=="true";
},
getTokenType: function() {
return this.get("tokenType");
},
getId: function() {
return ["",this.getDocIndex(),this.getPosition()].join("_");
},
getDocIndex: function() {
return this.get("docIndex");
},
getDocId: function() {
return this.get("docId");
},
getTerm: function() {
return this.get("term");
},
getTermWithLineSpacing: function(isPlainText) {
var term = this.getTerm().replace(/<\/?\w+\b.*?>/g, "<br /><br />").replace(/>\s+</g,"><").replace(/<br \/><br \/>(<br \/>)+/g,"<br \/><br \/>");
if (isPlainText) {term = term.replace(/(\r\n|\r|\n)\s*/g,"<br />");};
return term;
},
getPosition: function() {
return this.get("position");
},
getDocumentRawFreq: function() {
return this.get("rawFreq");
}
});

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src/Voyant-master/src/main/webapp/app/data/store/CAAnalysis.js
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Ext.define('Voyant.data.store.CAAnalysisMixin', {
mixins: ['Voyant.data.store.VoyantStore'],
embeddable: ['Voyant.panel.ScatterPlot'],
model: 'Voyant.data.model.StatisticalAnalysis',
constructor : function(config) {
this.mixins['Voyant.data.store.VoyantStore'].constructor.apply(this, [config, {
'proxy.extraParams.tool': 'corpus.CA',
'proxy.reader.rootProperty': 'correspondenceAnalysis',
'proxy.reader.totalProperty': 'correspondenceAnalysis.totalTerms'
}])
config.proxy.extraParams.withDistributions = true;
}
});
Ext.define('Voyant.data.store.CAAnalysis', {
extend: 'Ext.data.Store',
mixins: ['Voyant.data.store.CAAnalysisMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.CAAnalysisMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});
Ext.define('Voyant.data.store.CAAnalysisBuffered', {
extend: 'Ext.data.BufferedStore',
mixins: ['Voyant.data.store.CAAnalysisMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.CAAnalysisMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});

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src/Voyant-master/src/main/webapp/app/data/store/Contexts.js
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Ext.define('Voyant.data.store.ContextsMixin', {
mixins: ['Voyant.data.store.VoyantStore'],
model: 'Voyant.data.model.Context',
constructor : function(config) {
this.mixins['Voyant.data.store.VoyantStore'].constructor.apply(this, [config, {
'proxy.extraParams.tool': 'corpus.DocumentContexts',
'proxy.reader.rootProperty': 'documentContexts.contexts',
'proxy.reader.totalProperty': 'documentContexts.total'
}])
}
});
Ext.define('Voyant.data.store.Contexts', {
extend: 'Ext.data.Store',
mixins: ['Voyant.data.store.ContextsMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.ContextsMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});
Ext.define('Voyant.data.store.ContextsBuffered', {
extend: 'Ext.data.BufferedStore',
mixins: ['Voyant.data.store.ContextsMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.ContextsMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});

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src/Voyant-master/src/main/webapp/app/data/store/CorpusCollocates.js
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Ext.define('Voyant.data.store.CorpusCollocatesMixin', {
mixins: ['Voyant.data.store.VoyantStore'],
model: 'Voyant.data.model.CorpusCollocate',
constructor : function(config) {
this.mixins['Voyant.data.store.VoyantStore'].constructor.apply(this, [config, {
'proxy.extraParams.tool': 'corpus.CorpusCollocates',
'proxy.reader.rootProperty': 'corpusCollocates.collocates',
'proxy.reader.totalProperty': 'corpusCollocates.total'
}])
}
});
Ext.define('Voyant.data.store.CorpusCollocates', {
extend: 'Ext.data.Store',
mixins: ['Voyant.data.store.CorpusCollocatesMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.CorpusCollocatesMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});
Ext.define('Voyant.data.store.CorpusCollocatesBuffered', {
extend: 'Ext.data.BufferedStore',
mixins: ['Voyant.data.store.CorpusCollocatesMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.CorpusCollocatesMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});

31
src/Voyant-master/src/main/webapp/app/data/store/CorpusFacets.js
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Ext.define('Voyant.data.store.CorpusFacetsMixin', {
mixins: ['Voyant.data.store.VoyantStore'],
model: Voyant.data.model.CorpusFacet,
constructor : function(config) {
this.mixins['Voyant.data.store.VoyantStore'].constructor.apply(this, [config, {
'proxy.extraParams.tool': 'corpus.CorpusFacets',
'proxy.reader.rootProperty': 'corpusFacets.facets',
'proxy.reader.totalProperty': 'corpusFacets.total'
}])
}
});
Ext.define('Voyant.data.store.CorpusFacets', {
extend: 'Ext.data.Store',
mixins: ['Voyant.data.store.CorpusFacetsMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.CorpusFacetsMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});
Ext.define('Voyant.data.store.CorpusFacetsBuffered', {
extend: 'Ext.data.BufferedStore',
mixins: ['Voyant.data.store.CorpusFacetsMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.CorpusFacetsMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});

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src/Voyant-master/src/main/webapp/app/data/store/CorpusNgrams.js
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Ext.define('Voyant.data.store.CorpusNgramsMixin', {
mixins: ['Voyant.data.store.VoyantStore'],
model: 'Voyant.data.model.CorpusNgram',
constructor : function(config) {
this.mixins['Voyant.data.store.VoyantStore'].constructor.apply(this, [config, {
'proxy.extraParams.tool': 'corpus.CorpusNgrams',
'proxy.reader.rootProperty': 'corpusNgrams.ngrams',
'proxy.reader.totalProperty': 'corpusNgrams.total'
}])
}
});
Ext.define('Voyant.data.store.CorpusNgrams', {
extend: 'Ext.data.Store',
mixins: ['Voyant.data.store.CorpusNgramsMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.CorpusNgramsMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});
Ext.define('Voyant.data.store.CorpusNgramsBuffered', {
extend: 'Ext.data.BufferedStore',
mixins: ['Voyant.data.store.CorpusNgramsMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.CorpusNgramsMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});

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src/Voyant-master/src/main/webapp/app/data/store/CorpusTerms.js
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Ext.define('Voyant.data.store.CorpusTermsMixin', {
mixins: ['Voyant.data.store.VoyantStore'],
model: Voyant.data.model.CorpusTerm,
// statics: {
// i18n: {
// getString: "This store has {0} terms with a total of {1} occurrences."
// }
// },
constructor : function(config) {
this.mixins['Voyant.data.store.VoyantStore'].constructor.apply(this, [config, {
'proxy.extraParams.tool': 'corpus.CorpusTerms',
'proxy.reader.rootProperty': 'corpusTerms.terms',
'proxy.reader.totalProperty': 'corpusTerms.total'
}])
},
show: function(config) {
show(this.getString(config))
}
});
/*
* Corpus Terms store.
*/
Ext.define('Voyant.data.store.CorpusTerms', {
extend: 'Ext.data.Store',
mixins: ['Voyant.data.store.CorpusTermsMixin'],
model: Voyant.data.model.CorpusTerm,
/**
* @method each
* Iterate over each {@link Voyant.data.model.CorpusTerm corpus term} in this store.
*
* new Corpus("Hello Voyant!").loadCorpusTerms().then(function(corpusTerms) {
* corpusTerms.each(function(corpusTerm) {
* corpusTerm.show();
* });
* });
*
* @param {function} function The function to call for each corpus term.
*/
/**
* @method show
* Shows a one line summary of the corpus terms.
*
* new Corpus("Hello Voyant!").loadCorpusTerms().then(function(corpusTerms) {
* corpusTerms.show();
* });
*/
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.CorpusTermsMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});
Ext.define('Voyant.data.store.CorpusTermsBuffered', {
extend: 'Ext.data.BufferedStore',
mixins: ['Voyant.data.store.CorpusTermsMixin'],
model: Voyant.data.model.CorpusTerm,
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.CorpusTermsMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});

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src/Voyant-master/src/main/webapp/app/data/store/DocSimAnalysis.js
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Ext.define('Voyant.data.store.DocSimAnalysisMixin', {
mixins: ['Voyant.data.store.VoyantStore'],
model: 'Voyant.data.model.StatisticalAnalysis',
constructor : function(config) {
this.mixins['Voyant.data.store.VoyantStore'].constructor.apply(this, [config, {
'proxy.extraParams.tool': 'corpus.DocumentSimilarity',
'proxy.reader.rootProperty': 'documentSimilarity',
'proxy.reader.totalProperty': 'documentSimilarity.total'
}])
config.proxy.extraParams.withDistributions = true;
}
});
Ext.define('Voyant.data.store.DocSimAnalysis', {
extend: 'Ext.data.Store',
mixins: ['Voyant.data.store.DocSimAnalysisMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.DocSimAnalysisMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});
Ext.define('Voyant.data.store.DocSimAnalysisBuffered', {
extend: 'Ext.data.BufferedStore',
mixins: ['Voyant.data.store.DocSimAnalysisMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.DocSimAnalysisMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});

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src/Voyant-master/src/main/webapp/app/data/store/DocumentEntities.js
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Ext.define('Voyant.data.store.DocumentEntitiesMixin', {
mixins: ['Voyant.data.store.VoyantStore'],
model: 'Voyant.data.model.DocumentEntity',
constructor : function(config) {
this.mixins['Voyant.data.store.VoyantStore'].constructor.apply(this, [config, {
'proxy.extraParams.tool': 'corpus.DocumentEntities',
'proxy.reader.rootProperty': 'documentEntities.entities',
'proxy.reader.totalProperty': 'documentEntities.total'
}])
}
});
Ext.define('Voyant.data.store.DocumentEntities', {
extend: 'Ext.data.Store',
mixins: ['Voyant.data.store.DocumentEntitiesMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.DocumentEntitiesMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});
Ext.define('Voyant.data.store.DocumentEntitiesBuffered', {
extend: 'Ext.data.BufferedStore',
mixins: ['Voyant.data.store.DocumentEntitiesMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.DocumentEntitiesMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});

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src/Voyant-master/src/main/webapp/app/data/store/DocumentQueryMatches.js
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Ext.define('Voyant.data.store.DocumentQueryMatchesMixin', {
mixins: ['Voyant.data.store.VoyantStore'],
model: 'Voyant.data.model.DocumentQueryMatch',
constructor : function(config) {
this.mixins['Voyant.data.store.VoyantStore'].constructor.apply(this, [config, {
'proxy.extraParams.tool': 'corpus.DocumentsFinder',
'proxy.reader.rootProperty': 'documentsFinder.queries',
'proxy.reader.totalProperty': undefined,
'proxy.reader.metaProperty': 'documentsFinder.corpus'
}])
}
});
Ext.define('Voyant.data.store.DocumentQueryMatches', {
extend: 'Ext.data.Store',
mixins: ['Voyant.data.store.DocumentQueryMatchesMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.DocumentQueryMatchesMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});
Ext.define('Voyant.data.store.DocumentQueryMatchesBuffered', {
extend: 'Ext.data.BufferedStore',
mixins: ['Voyant.data.store.DocumentQueryMatchesMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.DocumentQueryMatchesMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});

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src/Voyant-master/src/main/webapp/app/data/store/DocumentTerms.js
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Ext.define('Voyant.data.store.DocumentTermsMixin', {
mixins: ['Voyant.data.store.VoyantStore'],
model: 'Voyant.data.model.DocumentTerm',
constructor : function(config) {
this.mixins['Voyant.data.store.VoyantStore'].constructor.apply(this, [config, {
'proxy.extraParams.tool': 'corpus.DocumentTerms',
'proxy.reader.rootProperty': 'documentTerms.terms',
'proxy.reader.totalProperty': 'documentTerms.total'
}])
}
});
Ext.define('Voyant.data.store.DocumentTerms', {
extend: 'Ext.data.Store',
mixins: ['Voyant.data.store.DocumentTermsMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.DocumentTermsMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});
Ext.define('Voyant.data.store.DocumentTermsBuffered', {
extend: 'Ext.data.BufferedStore',
mixins: ['Voyant.data.store.DocumentTermsMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.DocumentTermsMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});

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src/Voyant-master/src/main/webapp/app/data/store/Documents.js
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Ext.define('Voyant.data.store.DocumentsMixin', {
mixins: ['Voyant.data.store.VoyantStore'],
model: 'Voyant.data.model.Document',
statics: {
i18n: {
}
},
sorters: {
property: 'index',
direction: 'ASC'
},
remoteSort: true,
constructor : function(config) {
this.mixins['Voyant.data.store.VoyantStore'].constructor.apply(this, [config, {
'proxy.extraParams.tool': 'corpus.DocumentsMetadata',
'proxy.reader.rootProperty': 'documentsMetadata.documents',
'proxy.reader.totalProperty': 'documentsMetadata.total'
}])
},
listeners: {
load: function(store, records, successful, opts) {
if (successful) {
var corpus = store.getCorpus();
records.forEach(function(record) {
record.set('corpus', corpus);
});
}
}
},
getDocument: function(config) {
return Ext.isNumber(config) ? this.getAt(config) : this.getById(config);
}
});
Ext.define('Voyant.data.store.Documents', {
extend: 'Ext.data.Store',
mixins: ['Voyant.data.store.DocumentsMixin'],
model: 'Voyant.data.model.Document',
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.DocumentsMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});
Ext.define('Voyant.data.store.DocumentsBuffered', {
extend: 'Ext.data.BufferedStore',
mixins: ['Voyant.data.store.DocumentsMixin'],
model: 'Voyant.data.model.Document',
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.DocumentsMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});

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src/Voyant-master/src/main/webapp/app/data/store/NotebookFacets.js
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Ext.define('Voyant.data.model.NotebookFacet', {
extend: 'Ext.data.Model',
idProperty: 'label',
fields: [
{name: 'facet'},
{name: 'label'},
{name: 'inDocumentsCount', type: 'int'}
],
getLabel: function() {
return this.get('label')
},
getFacet: function() {
return this.get('facet')
},
getInDocumentsCount: function() {
return this.get('inDocumentsCount')
}
});
Ext.define('Voyant.data.store.NotebookFacetsMixin', {
mixins: ['Voyant.data.store.VoyantStore'],
model: Voyant.data.model.NotebookFacet,
constructor : function(config) {
if (config.facet) {
if (config.proxy === undefined) {
config.proxy = {};
}
if (config.proxy.extraParams === undefined) {
config.proxy.extraParams = {};
}
config.proxy.extraParams.facet = config.facet;
config.proxy.extraParams.noCache = 1;
delete config.facet;
}
this.mixins['Voyant.data.store.VoyantStore'].constructor.apply(this, [config, {
'proxy.extraParams.tool': 'notebook.CatalogueFacets',
'proxy.reader.rootProperty': 'catalogue.facets',
'proxy.reader.totalProperty': 'catalogue.total'
}])
}
});
Ext.define('Voyant.data.store.NotebookFacets', {
extend: 'Ext.data.Store',
mixins: ['Voyant.data.store.NotebookFacetsMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.NotebookFacetsMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});
Ext.define('Voyant.data.store.NotebookFacetsBuffered', {
extend: 'Ext.data.BufferedStore',
mixins: ['Voyant.data.store.NotebookFacetsMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.NotebookFacetsMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});

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src/Voyant-master/src/main/webapp/app/data/store/PCAAnalysis.js
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Ext.define('Voyant.data.store.PCAAnalysisMixin', {
mixins: ['Voyant.data.store.VoyantStore'],
embeddable: ['Voyant.panel.ScatterPlot'],
model: 'Voyant.data.model.StatisticalAnalysis',
constructor : function(config) {
this.mixins['Voyant.data.store.VoyantStore'].constructor.apply(this, [config, {
'proxy.extraParams.tool': 'corpus.PCA',
'proxy.reader.rootProperty': 'pcaAnalysis',
'proxy.reader.totalProperty': 'pcaAnalysis.totalTerms'
}])
config.proxy.extraParams.withDistributions = true;
}
});
Ext.define('Voyant.data.store.PCAAnalysis', {
extend: 'Ext.data.Store',
mixins: ['Voyant.data.store.PCAAnalysisMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.PCAAnalysisMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});
Ext.define('Voyant.data.store.PCAAnalysisBuffered', {
extend: 'Ext.data.BufferedStore',
mixins: ['Voyant.data.store.PCAAnalysisMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.PCAAnalysisMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});

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src/Voyant-master/src/main/webapp/app/data/store/RelatedTerms.js
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Ext.define('Voyant.data.store.RelatedTermsMixin', {
mixins: ['Voyant.data.store.VoyantStore'],
model: 'Voyant.data.model.RelatedTerm',
constructor : function(config) {
this.mixins['Voyant.data.store.VoyantStore'].constructor.apply(this, [config, {
'proxy.extraParams.tool': 'corpus.SemanticGraph',
'proxy.reader.rootProperty': 'semanticGraph.edges',
'proxy.reader.totalProperty': 'semanticGraph.total'
}])
}
});
Ext.define('Voyant.data.store.RelatedTerms', {
extend: 'Ext.data.Store',
mixins: ['Voyant.data.store.RelatedTermsMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.RelatedTermsMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});
Ext.define('Voyant.data.store.RelatedTermsBuffered', {
extend: 'Ext.data.BufferedStore',
mixins: ['Voyant.data.store.RelatedTermsMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.RelatedTermsMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});

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src/Voyant-master/src/main/webapp/app/data/store/TSNEAnalysis.js
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Ext.define('Voyant.data.store.TSNEAnalysisMixin', {
mixins: ['Voyant.data.store.VoyantStore'],
embeddable: ['Voyant.panel.ScatterPlot'],
model: 'Voyant.data.model.StatisticalAnalysis',
constructor : function(config) {
this.mixins['Voyant.data.store.VoyantStore'].constructor.apply(this, [config, {
'proxy.extraParams.tool': 'corpus.TSNE',
'proxy.reader.rootProperty': 'tsneAnalysis',
'proxy.reader.totalProperty': 'tsneAnalysis.totalTerms'
}])
config.proxy.extraParams.withDistributions = true;
config.proxy.extraParams.noCache = 1;
}
});
Ext.define('Voyant.data.store.TSNEAnalysis', {
extend: 'Ext.data.Store',
mixins: ['Voyant.data.store.TSNEAnalysisMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.TSNEAnalysisMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});
Ext.define('Voyant.data.store.TSNEAnalysisBuffered', {
extend: 'Ext.data.BufferedStore',
mixins: ['Voyant.data.store.TSNEAnalysisMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.TSNEAnalysisMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});

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src/Voyant-master/src/main/webapp/app/data/store/TermCorrelations.js
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Ext.define('Voyant.data.store.TermCorrelationsMixin', {
mixins: ['Voyant.data.store.VoyantStore'],
model: 'Voyant.data.model.TermCorrelation',
constructor : function(config) {
this.mixins['Voyant.data.store.VoyantStore'].constructor.apply(this, [config, {
'proxy.extraParams.tool': 'corpus.CorpusTermCorrelations',
'proxy.extraParams.withDistributions': 'true',
'proxy.reader.rootProperty': 'termCorrelations.correlations',
'proxy.reader.totalProperty': 'termCorrelations.total'
}])
}
});
Ext.define('Voyant.data.store.TermCorrelations', {
extend: 'Ext.data.Store',
mixins: ['Voyant.data.store.TermCorrelationsMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.TermCorrelationsMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});
Ext.define('Voyant.data.store.TermCorrelationsBuffered', {
extend: 'Ext.data.BufferedStore',
mixins: ['Voyant.data.store.TermCorrelationsMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.TermCorrelationsMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});

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src/Voyant-master/src/main/webapp/app/data/store/Tokens.js
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Ext.define('Voyant.data.store.TokensMixin', {
mixins: ['Voyant.data.store.VoyantStore'],
model: 'Voyant.data.model.Token',
constructor : function(config) {
this.mixins['Voyant.data.store.VoyantStore'].constructor.apply(this, [config, {
'proxy.extraParams.tool': 'corpus.DocumentTokens',
'proxy.reader.rootProperty': 'documentTokens.tokens',
'proxy.reader.totalProperty': 'documentTokens.total'
}])
}
});
Ext.define('Voyant.data.store.Tokens', {
extend: 'Ext.data.Store',
mixins: ['Voyant.data.store.TokensMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.TokensMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});
Ext.define('Voyant.data.store.TokensBuffered', {
extend: 'Ext.data.BufferedStore',
mixins: ['Voyant.data.store.TokensMixin'],
constructor : function(config) {
config = config || {};
this.mixins['Voyant.data.store.TokensMixin'].constructor.apply(this, [config])
this.callParent([config]);
}
});

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src/Voyant-master/src/main/webapp/app/data/store/VoyantStore.js
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Ext.define('Voyant.data.store.VoyantStore', {
mixins: ['Voyant.util.Localization','Voyant.notebook.util.Embed'],
config: {
corpus: undefined,
parentPanel: undefined
},
constructor: function(config, extras) {
var me = this;
config = config || {};
Ext.applyIf(config, {
remoteSort: true,
autoLoad: false,
// listeners: {
// beforeload: function(store, operation) {
// var parent = this.getParentPanel();
// if (parent !== undefined) {
// var params = parent.getApiParams();
// operation = operation ? (operation===1 ? {} : operation) : {};
// operation.params = operation.params || {};
// for (var key in params) {
// operation.params[key] = params[key];
// }
// }
// }
// },
// scope: this,
// define buffered configuration even if ignored when this isn't a buffered store
pagePurgeCount : 0, // don't purge any data
pageSize : 100, // each request is more intenstive, so do fewer of them then default
leadingBufferZone : 200 // stay two pages ahead
});
config.proxy = config.proxy || {};
Ext.applyIf(config.proxy, {
type: 'ajax',
url: Voyant.application.getTromboneUrl(),
actionMethods: {read: 'POST'},
reader: {
type: 'json',
rootProperty: extras['proxy.reader.rootProperty'],
totalProperty: extras['proxy.reader.totalProperty'],
metaProperty: extras['proxy.reader.metaProperty'] || 'metaData'
},
simpleSortMode: true,
listeners: {
exception: function(proxy, request, operation) {
if (me.parentPanel && me.parentPanel.showError) {
// FIXME: this should probably send the request, not the operation
me.parentPanel.showError(operation)
}
}
}
})
config.proxy.extraParams = config.proxy.extraParams || {};
Ext.applyIf(config.proxy.extraParams, {
tool: extras['proxy.extraParams.tool']
});
if (config.parentPanel !== undefined) {
Ext.applyIf(config.proxy.extraParams, {
forTool: config.parentPanel.xtype
});
this.setParentPanel(config.parentPanel);
config.parentPanel.on("loadedCorpus", function(src, corpus) {
this.setCorpus(corpus);
}, this);
config.listeners = config.listeners || {};
config.listeners.beforeload = {
fn: function(store, operation) {
var parent = this.getParentPanel(), proxy = store.getProxy();
if (parent !== undefined) {
var params = parent.getApiParams();
operation = operation ? (operation===1 ? {} : operation) : {};
operation.params = operation.params || {};
// unset any previously set extra params (only applies with proxy and buffered store)
if (proxy && this.isBufferedStore) {
Ext.Array.from(this.previouslySetExtraParams).forEach(function(key) {
proxy.setExtraParam(key, undefined);
});
this.previouslySetExtraParams = [];
}
for (var key in params) {
/* TODO NOT SURE ABOUT THIS
// don't sent stopList when there's a query
if (key=="stopList" && "query" in params && params.query) {continue;}
*/
if (proxy && this.isBufferedStore) { // also set proxy for automatic buffering calls
this.previouslySetExtraParams.push(key);
proxy.setExtraParam(key, params[key]);
}
operation.params[key] = params[key];
}
}
},
scope: this
}
}
Ext.apply(this, config);
},
setCorpus: function(corpus) {
if (corpus && this.getProxy && this.getProxy()) {
this.getProxy().setExtraParam('corpus', Ext.isString(corpus) ? corpus : corpus.getId());
}
this.callParent(arguments);
},
getString: function(config) {
var count = this.getCount();
return "This store contains "+this.getCount()+" items"+(count>0 ? " with these fields: "+this.getAt(0).getFields().map(function(field) {return field.getName()}).join(", ") : "")+"."
},
embed: function(cmp, config) {
if (!config && Ext.isObject(cmp)) {
config = cmp;
cmp = this.embeddable[0];
}
config = config || {};
var data = [];
this.each(function(record) {
data.push(record.data);
}, this);
Ext.apply(config, {
storeJson: JSON.stringify({
storeClass: Ext.getClassName(this),
storeData: data
})
});
embed.call(this, cmp, config);
}
});

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src/Voyant-master/src/main/webapp/app/data/util/Geonames.js
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Ext.define('Voyant.data.util.Geonames', {
mixins: ['Voyant.util.Localization'],
statics: {
i18n: {
}
},
config: {
data: {},
queries: undefined,
corpus: undefined,
isIncrementalLoadingOccurrences: false,
previousParams: {}
},
constructor: function(config, opts) {
config = config || {};
this.callParent([config]);
this.setCorpus(config.corpus);
},
load: function(params, dfd) {
this.setPreviousParams(params);
dfd = dfd || Voyant.application.getDeferred(this);
var me = this, localParams = {
corpus: this.getCorpus().getAliasOrId(),
queries: this.getQueries(),
tool: 'corpus.Dreamscape',
limit: 200
};
Ext.apply(localParams, params || {});
if (!params.noOverwrite) {
me.setData({});
}
Ext.Ajax.request({
url: Voyant.application.getTromboneUrl(),
params: localParams,
scope: this
}).then(function(response) {
var data = Ext.JSON.decode(response.responseText);
if (data && data.dreamscape && data.dreamscape.progress) {
new Voyant.widget.ProgressMonitor({
progress: data.dreamscape.progress,
maxMillisSinceStart: 1000*60*60, // an hour (!)
tool: 'corpus.Dreamscape',
success: function() {
me.load.call(me, params, dfd);
},
failure: function(responseOrProgress) {
Voyant.application.showResponseError(me.localize("failedToFetchGeonames"), responseOrProgress);
},
scope: me
});
}
if (data && data.dreamscape && !data.dreamscape.progress) {
if (!params.noOverwrite) {
me.setData(data.dreamscape);
}
dfd.resolve(data);
}
}, function(response) {
Voyant.application.showResponseError(me.localize('failedToFetchGeonames'), response);
});
return dfd.promise;
},
getCitiesCount: function() {
return Object.keys(this.getData().locations.locations).length;
},
getTotalCitiesCount: function() {
return this.getData().locations.total;
},
hasMoreCities: function() {
return this.getCitiesCount()<this.getTotalCitiesCount();
},
eachCity: function(fn, scope, max) {
var locations = this.getData().locations.locations, orderedLocations = [];
for (var id in locations) { // create a sortable list with id
orderedLocations.push(Ext.apply(locations[id], {id: id}))
}
orderedLocations.sort(function(c1, c2) { // order by rawFreq (count)
return c1.rawFreq == c2.rawFreq ? c1.label - c2.label : c2.rawFreq - c1.rawFreq;
});
if (max && orderedLocations.length>max) {orderedLocations = orderedLocations.slice(0,max)}
orderedLocations.forEach(function(location) {fn.call(scope, location);});
},
getConnectionsCount: function() {
return this.getData().connections.connections.length;
},
getTotalConnectionsCount: function() {
return this.getData().connections.total;
},
eachConnection: function(fn, scope, max) {
var connections = this.getData().connections.connections,
locations = this.getData().locations.locations;
orderedConnections = [];
for (var i=0, len=connections.length; i<len; i++) {
fn.call(scope, {
source: Ext.apply({id: connections[i].source}, locations[connections[i].source]),
target: Ext.apply({id: connections[i].target}, locations[connections[i].target]),
rawFreq: connections[i].rawFreq
});
if (i>max) {break;}
}
},
getConnectionOccurrence: function(index) {
if (!this.getData().locations) {return undefined;}
var connectionOccurrencesData = this.getData().connectionOccurrences,
connectionOccurrences = connectionOccurrencesData.connectionOccurrences;
locations = this.getData().locations.locations;
if (!this.getIsIncrementalLoadingOccurrences() && connectionOccurrences.length<connectionOccurrencesData.total && index+100>connectionOccurrences.length) {
this.setIsIncrementalLoadingOccurrences(true);
var me = this;
var params = {};
Ext.apply(params, this.getPreviousParams);
Ext.apply(params, {
start: connectionOccurrences.length,
noOverwrite: true,
suppressLocations: true,
suppressConnections: true
});
this.load(params).then(function(data) {
me.setIsIncrementalLoadingOccurrences(false);
me.getData().connectionOccurrences.connectionOccurrences = connectionOccurrences.concat(data.dreamscape.connectionOccurrences.connectionOccurrences);
})
}
if (connectionOccurrences && connectionOccurrences[index]) {
var occurrence = connectionOccurrences[index];
occurrence.index = index;
Ext.apply(occurrence.source, locations[occurrence.source.location]);
Ext.apply(occurrence.target, locations[occurrence.target.location]);
return occurrence;
}
return null;
},
getAllConnectionOccurrences: function(sourceId, targetId) {
debugger
// TODO return all occurences of connection with given source and target, including those not loaded yet
var occurences = [];
for (var i = 0; i < this.getTotalConnectionsCount(); i++) {
var occurence = this.getConnectionOccurrence(i);
if (occurence && occurence.target.id == targetId && occurence.source.id == sourceId) {
occurences.push(occurence);
}
}
return occurences
}
});

84
src/Voyant-master/src/main/webapp/app/data/util/NetworkGraph.js
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/*
* @class NetworkGraph
*
* A NetworkGraph can facilitate working with network graph data structures, as well as
* displaying results (especially with {@link #embed} and {@link show}).
* Here's a simple example showing the Zipf-Law distribution of the top 20 frequency terms.
*
* new Corpus("austen").loadCorpusTerms(20).then(function(corpusTerms) {
* var table = new VoyantTable({rowKey: 0}); // use first column as row key
* corpusTerms.each(function(corpusTerm) {
* table.addRow([corpusTerm.getTerm(), corpusTerm.getRawFreq()]);
* });
* table.embed("voyantchart"); // graph table as line chart
* });
*/
Ext.define('Voyant.data.util.NetworkGraph', {
alternateClassName: ["NetworkGraph"],
mixins: ['Voyant.notebook.util.Embed','Voyant.notebook.util.Show'],
embeddable: ["Voyant.widget.VoyantNetworkGraph"],
config: {
/**
* @private
*/
edges: [],
/**
* @private
*/
nodes: []
},
constructor: function(config, opts) {
config = config || {};
this.setEdges(Ext.Array.from(config.edges));
this.setNodes(Ext.Array.from(config.nodes));
this.callParent([config]);
},
addEdge: function(src, target, value) {
this.getEdges().push(Ext.isObject(src) ? src : {source: src, target: target, value: value});
},
getNode: function(term) {
return Ext.Array.binarySearch(this.getNodes(), term, undefined, undefined, function(lhs, rhs) {
return (lhs.term < rhs.term) ? -1 : ((lhs.term > rhs.term) ? 1 : 0);
})
},
embed: function(cmp, config) {
if (!config && Ext.isObject(cmp)) {
config = cmp;
cmp = this.embeddable[0];
}
config = config || {};
var json = {
edges: this.getEdges(),
nodes: this.getNodes(),
config: config
};
if (config.limit && json.edges.length>config.limit) {
json.edges = json.edges.slice(0, config.limit);
var terms = {};
json.edges.forEach(function(edge) {
terms["_"+edge.source] = true;
terms["_"+edge.target] = true;
})
var nodes = [];
json.nodes.forEach(function(node) {
if ("_"+node.term in terms) {
nodes.push(node);
}
});
json.nodes = nodes;
}
Ext.apply(config, {
jsonData: JSON.stringify(json)
})
embed.call(this, cmp, config);
},
getString: function(config) {
config = config || {};
return this.getEdges().map(function(edge) {edge.source+"-"+edge.target}).join("; ");
}
});

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src/Voyant-master/src/main/webapp/app/data/util/Table.js
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/*
* @class VoyantTable
* A VoyantTable can facilitate working with tabular data structures, as well as
* displaying results (especially with {@link #embed} and {@link show}).
* Here's a simple example showing the Zipf-Law distribution of the top 20 frequency terms.
*
* new Corpus("austen").loadCorpusTerms(20).then(function(corpusTerms) {
* var table = new VoyantTable({rowKey: 0}); // use first column as row key
* corpusTerms.each(function(corpusTerm) {
* table.addRow([corpusTerm.getTerm(), corpusTerm.getRawFreq()]);
* });
* table.embed("voyantchart"); // graph table as line chart
* });
*/
Ext.define('Voyant.data.table.Table', {
alternateClassName: ["VoyantTable"],
mixins: ['Voyant.notebook.util.Embed','Voyant.notebook.util.Show'],
embeddable: ['Voyant.widget.VoyantTableTransform','Voyant.widget.VoyantChart','Voyant.widget.CodeEditor'],
config: {
/**
* @private
*/
rows: [],
/**
* @private
*/
headers: [],
/**
* @private
*/
rowsMap: {},
/**
* @private
*/
headersMap: {},
/**
* Specifies that a specific header should serve as row key.
*
*/
rowKey: undefined,
/**
* @private
*/
model: undefined
},
clone: function() {
var table = new VoyantTable();
table.setRows(Ext.clone(this.getRows()));
table.setHeaders(Ext.clone(this.getHeaders()))
table.setRowsMap(Ext.clone(this.getRowsMap()))
table.setHeadersMap(Ext.clone(this.getHeadersMap()))
table.setRowKey(Ext.clone(this.getRowKey()))
return table;
},
constructor: function(config, opts) {
config = config || {};
if (config.fromBlock) {
var data = Voyant.notebook.Notebook.getDataFromBlock(config.fromBlock);
if (data) {
data = data.trim();
config.rows = [];
data.split(/\n+/).forEach(function(line,i) {
var cells = line.split("\t");
if (i==0 && !config.noHeaders) {
config.headers = cells
} else {
config.rows.push(cells)
}
})
}
} else if (config.count && Ext.isArray(config.count)) {
// create counts
var freqs = {};
config.count.forEach(function(item) {freqs[item] = freqs[item] ? freqs[item]+1 : 1;});
// sort counts
var counts = [];
for (var key in freqs) {counts.push([key, freqs[key]])}
counts.sort(function(a,b) {return b[1] - a[1]});
if (config.limit && counts.length>config.limit) {
counts.splice(config.limit);
}
if (config.orientation && config.orientation=="horizontal") {
config.headers = counts.map(function(item) {return item[0]});
config.rows = [counts.map(function(item) {return item[1]})];
} else {
config.headers = config.headers ? config.headers : ["Item","Count"];
config.rows = counts;
}
} else if (config.isStore || config.store) {
var store = config.store ? config.store : config;
if (opts && opts.headers) {
config.headers = opts.headers;
} else {
// store.getModel() doesn't seem to work (for CorpusTerms at least)
// so instead we'll try looking at the first record to get headers
var record = store.getAt(0);
if (record) { // don't know what to do if this fails?
config.headers = record.getFields().map(function(field) {return field.getName()});
}
}
// now we get rows
config.rows = [];
store.each(function(record) {
var data = record.getData();
var cells = config.headers.map(function(header) {return data[header]}); // only from headers
config.rows.push(cells);
}, this);
}
// not sure why config isn't working
if (!config.rows && Ext.isArray(config)) {
config.rows = config;
}
if (!this.getHeaders()) {
if (!config.headers && !config.noHeaders && config.rows) {
this.setHeaders(config.rows.shift())
} else {
this.setHeaders(Ext.Array.from(config.headers));
}
}
this.setRows(Ext.Array.from(config.rows));
this.setRowKey(config.rowKey ? config.rowKey : this.getHeaders()[0]);
// if we have no headers, use the index as header
if (this.getHeaders().length==0) {
var firstRow = this.getRow(0, false);
if (firstRow) {
this.setHeaders(firstRow.map(function(cell, i) {return i}));
}
}
var headersMap = {};
this.getHeaders().forEach(function(header, i) {
headersMap[header] = i;
});
this.setHeadersMap(headersMap);
this.reMapRows();
this.callParent();
},
addRow: function(row) {
if (Ext.isArray(row))
if (Ext.isObject(row)) {
var len = this.getRows().length;
for (var key in row) {
this.updateCell(len, key, row[key])
}
} else if (Ext.isArray(row)) {
this.getRows().push(row);
var header = this.getColumnIndex(this.getRowKey());
if (header!==undefined && row[header]!==undefined) {
this.getRowsMap()[row[header]] = this.getRows().length-1;
}
}
},
eachRecord: function(fn, scope) {
var item, i=0, len=this.getRows().length;
for (; i<len; i++) {
item = this.getRecord(i);
if (fn.call(scope || item, item, i, len) === false) {
break;
}
}
},
eachRow: function(fn, asMap, scope) {
var item, i=0, len=this.getRows().length;
for (; i<len; i++) {
item = this.getRow(i, asMap);
if (fn.call(scope || item, item, i, len) === false) {
break;
}
}
},
getRow: function(index, asMap) {
var r = this.getRowIndex(index);
if (asMap) {
var row = {};
var headers = this.getHeaders();
Ext.Array.from(this.getRows()[r]).forEach(function(item, i) {
row[headers[i] || i] = item;
}, this);
return row;
} else {
return this.getRows()[r];
}
},
getRecord: function(index) {
if (this.model) {return new this.model(this.getRow(index, true))}
},
mapRows: function(fn, asMap, scope) {
var rows = [];
this.eachRow(function(row, i) {
// if (Object.keys(row).length>0) {
rows.push(fn.call(scope || this, row, i))
// }
}, asMap, this)
return rows;
},
/**
* Update the cell value at the specified row and column.
*
* This will create the row and column as needed. If there's an existing value in the cell,
* it will be added to the new value, unless the `replace` argument is set to true.
*
* @param {Number/String} row The cell's row.
* @param {Number/String} column The cell's column.
* @param {Mixed} value The cell's value.
* @param {boolean} [replace] Replace the current value (if it exists), otherwise
* the value is added to any current value (which is the default behaviour).
*/
updateCell: function(row, column, value, replace) {
var rows = this.getRows();
var r = Ext.isNumber(row) ? row : this.getRowIndex(row);
var c = this.getColumnIndex(column);
if (rows[r]===undefined) {rows[r]=[]}
if (rows[r][c]===undefined || replace) {rows[r][c]=value}
else {rows[r][c]+=value}
// add to rowsMap if this is the header
if (this.getHeaders()[c]===this.getRowKey()) {
this.getRowsMap()[column] = r;
}
},
getRowIndex: function(key) {
if (Ext.isNumber(key)) {return key;}
if (Ext.isString(key)) {
var rowsMap = this.getRowsMap();
if (!(key in rowsMap)) {
rowsMap[key] = this.getRows().length;
this.getRows().push(new Array(this.getHeaders().length))
}
return rowsMap[key];
}
},
getColumnIndex: function(column) {
var headers = this.getHeaders();
if (Ext.isNumber(column)) {
if (headers[column]===undefined) {
headers[column]=column;
this.getRows().forEach(function(row) {
row.splice(column, 0, undefined);
});
}
return column;
} else if (Ext.isString(column)) {
if (!(column in this.getHeadersMap())) {
// we don't have this column yet, so create it and expand rows
this.getHeaders().push(column);
this.getHeadersMap()[column] = this.getHeaders().length-1
this.getRows().forEach(function(row) {
row.push(undefined)
});
}
return this.getHeadersMap()[column]
}
},
getColumnHeader: function(column) {
var c = this.getColumnIndex(column);
return this.getHeaders()[c];
},
/**
* Compute the sum of the values in the column.
*
* @param {Number/String} column The column index (as a number) or key (as a string).
*/
getColumnSum: function(column) {
return Ext.Array.sum(this.getColumnValues(column, true));
},
/**
* Compute the sum of the values in the column.
*
* @param {Number/String} column The column index (as a number) or key (as a string).
*/
getColumnMean: function(column) {
return Ext.Array.mean(this.getColumnValues(column, true));
},
/**
* Get the largest value in the array.
*
* @param {Number/String} column The column index (as a number) or key (as a string).
*/
getColumnMax: function(column) {
return Ext.Array.max(this.getColumnValues(column, true));
},
/**
* Get the smallest value in the array.
*
* @param {Number/String} column The column index (as a number) or key (as a string).
*/
getColumnMin: function(column) {
return Ext.Array.min(this.getColumnValues(column, true));
},
getColumnValues: function(column, clean) {
var c = this.getColumnIndex(column), vals = [];
this.eachRow(function(row) {
vals.push(row[c]);
});
if (clean) {return Ext.Array.clean(vals)}
else {return vals;}
},
/**
* @private
*/
reMapRows: function() {
var rowKey = this.getRowKey();
var rowsMap = {}
this.eachRow(function(row, i) {
if (rowKey in row) {
rowsMap[row[rowKey]] = i;
}
}, true);
this.setRowsMap(rowsMap)
},
sortByColumn: function(columns) {
var rows = this.getRows(),
sortColumnsIndices = Ext.Array.from(columns).map(function(column) {
if (Ext.isObject(column)) {
for (key in column) {
return {
index: this.getColumnIndex(key),
direction: column[key].indexOf("asc")>-1 ? 'asc' : 'desc'
}
}
} else {
return {
index: this.getColumnIndex(column),
direction: "desc"
}
}
}, this);
rows.sort(function(a, b) {
for (var i=0, len=sortColumnsIndices.length; i<len; i++) {
var header = sortColumnsIndices[i].index
if (a[header]!=b[header]) {
if (sortColumnsIndices[i].direction=='asc') {return a[header] > b[header] ? 1 : -1}
else {return a[header] > b[header] ? -1 : 1}
}
}
});
this.reMapRows();
return this;
},
loadCorrespondenceAnalysis: function(config) {
return this._doAnalysisLoad('table.CA', 'Voyant.data.store.CAAnalysis', config);
},
loadPrincipalComponentAnalysis: function(config) {
return this._doAnalysisLoad('table.PCA', 'Voyant.data.store.PCAAnalysis', config);
},
loadTSNEAnalysis: function(config) {
return this._doAnalysisLoad('table.TSNE', 'Voyant.data.store.TSNEAnalysis', config);
},
_doAnalysisLoad: function(tool, storeType, config) {
if (this.then) {
return Voyant.application.getDeferredNestedPromise(this, arguments);
} else {
config = config || {};
var dfd = Voyant.application.getDeferred(this);
Ext.apply(config, {
columnHeaders: true,
rowHeaders: true,
tool: tool,
analysisInput: this.toTsv(),
inputFormat: 'tsv'
});
var store = Ext.create(storeType, {noCorpus: true});
store.load({
params: config,
callback: function(records, operation, success) {
if (success) {
dfd.resolve(store, records)
} else {
dfd.reject(operation.error.response);
}
}
})
return dfd.promise
}
},
embed: function(cmp, config) {
if (!config && Ext.isObject(cmp)) {
config = cmp;
cmp = this.embeddable[0];
}
config = config || {};
var columnHeaders = Ext.Array.from(config.headers || this.getHeaders()).map(function(header) {return this.getColumnHeader(header);}, this);
var json = {
rowkey: this.getRowKey(),
config: config,
headers: columnHeaders
};
if ("headers" in config) {
var columnIndices = Ext.Array.from(config.headers).map(function(header) {return this.getColumnIndex(header);}, this);
var rows = [];
this.getRows().forEach(function(row) {
rows.push(columnIndices.map(function(i) {
return row[i]
}))
})
Ext.apply(json, {
rows: rows
})
} else {
Ext.apply(json, {
rows: this.getRows()
})
}
Ext.apply(config, {
tableJson: JSON.stringify(json)
});
delete config.axes;
delete config.series;
embed.call(this, cmp, config);
},
toTsv: function(config) {
var tsv = this.getHeaders().join("\t");
this.getRows().forEach(function(row, i) {
if (config && Ext.isNumber(config) && i>config) {return;}
tsv += "\n"+row.map(function(cell) {
return Ext.isString(cell) ? cell.replace(/(\n|\t)/g, "") : cell;
}).join("\t");
})
return tsv;
},
getString: function(config) {
config = config || {};
var table = "<table class='voyant-table' style='"+(config.width ? ' width: '+config.width : '')+"' id='"+(config.id ? config.id : Ext.id())+"'>";
var headers = this.getHeaders();
if (headers.length) {
table+="<thead><tr>";
for (var i=0, len = headers.length; i<len; i++) {
table+="<th>"+headers[i]+"</th>";
}
table+="</tr></thead>";
}
table+="<tbody>";
for (var i=0, len = Ext.isNumber(config) ? config : this.getRows().length; i<len; i++) {
var row = this.getRow(i);
if (row && Ext.isArray(row)) {
table+="<tr>";
row.forEach(function(cell) {
table+="<td>"+cell+"</td>";
})
table+="</tr>";
}
}
table+="</tbody></table>";
return table;
}
});

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src/Voyant-master/src/main/webapp/app/notebook/Catalogue.js
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Ext.define('Voyant.notebook.Catalogue', {
extend: 'Ext.Component',
requires: ['Voyant.widget.Facet','Voyant.data.store.NotebookFacets'],
mixins: ['Voyant.util.Localization'],
alias: 'widget.notebookcatalogue',
statics: {
i18n: {
title: 'Notebooks Catalogue',
browse: 'Browse Notebooks',
keywords: 'Keywords',
author: 'Author',
language: 'Language',
license: 'License',
search: 'Search',
noResults: 'No matching notebooks',
suggested: 'Suggested Notebooks',
load: 'Load Selected Notebook'
}
},
window: undefined,
store: undefined,
template: undefined,
config: {
facets: {}
},
constructor: function() {
this.store = Ext.create('Ext.data.JsonStore', {
fields: [
{name: 'id'},
{name: 'author'},
{name: 'title'},
{name: 'description'},
{name: 'keywords'},
{name: 'language'},
{name: 'license'},
{name: 'created', type: 'date'},
{name: 'modified', type: 'date'},
{name: 'version'}
]
});
this.template = new Ext.XTemplate(
'<tpl for=".">',
'<div class="catalogue-notebook">',
'<div class="id">{id}</div>',
'<div class="title nowrap" title="{title}">{title}</div>',
'<div class="author nowrap"><i class="fa fa-user" aria-hidden="true"></i> {author}</div>',
'<div class="dates"><span class="date"><i class="fa fa-clock-o" aria-hidden="true"></i> {[Ext.Date.format(values.modified, "M j Y")]}</span></div>',
'</div>',
'</tpl>'
);
this.callParent(arguments);
},
initComponent: function(config) {
this.callParent(arguments);
},
showWindow: function() {
if (this.window === undefined) {
this.window = Ext.create('Ext.window.Window', {
title: this.localize('title'),
width: 800,
height: 675,
modal: true,
layout: 'border',
items: [{
xtype: 'panel',
region: 'center',
flex: 2,
border: true,
layout: {
type: 'vbox',
align: 'stretch'
},
items: [{
xtype: 'toolbar',
height: 30,
layout: {
type: 'hbox',
pack: 'center'
},
items: [{xtype:'tbspacer', flex: .1},{
xtype: 'textfield',
itemId: 'queryfield',
emptyText: this.localize('search'),
flex: .8,
enableKeyEvents: true,
triggers: {
search: {
cls: 'fa-trigger form-fa-search-trigger',
handler: function(cmp) {
// var query = cmp.getValue();
// if (query.trim().length > 0) {
// this.getNotebooks([query]);
// }
this.getNotebooks();
},
scope: this
}
},
listeners: {
keyup: function(cmp, e) {
if (e.getCharCode() === 13) {
this.getNotebooks();
}
},
scope: this
}
},{xtype:'tbspacer', flex: .1}]
},{
xtype: 'dataview',
flex: 1,
width: '100%',
padding: 10,
scrollable: 'vertical',
itemId: 'catalogue',
store: this.store,
tpl: this.template,
itemSelector: 'div.catalogue-notebook',
overItemCls: 'catalogue-notebook-over',
selectedItemCls: 'catalogue-notebook-selected',
listeners: {
itemdblclick: function(view, record, el) {
this.fireEvent('notebookSelected', this, record.get('id'));
},
scope: this
}
}]
},{
xtype: 'panel',
region: 'west',
collapsible: true,
title: this.localize('browse'),
flex: 1,
itemId: 'facets',
layout: {
type: 'accordion',
animate: false,
multi: true,
align: 'stretch',
hideCollapseTool: true
},
defaults: {
xtype: 'facet',
flex: 1
},
items: [{
title: this.localize('keywords'),
facet: 'facet.keywords',
store: Ext.create('Voyant.data.store.NotebookFacets', {
facet: 'facet.keywords'
})
},{
title: this.localize('author'),
facet: 'facet.author',
store: Ext.create('Voyant.data.store.NotebookFacets', {
facet: 'facet.author'
})
},{
title: this.localize('language'),
facet: 'facet.language',
store: Ext.create('Voyant.data.store.NotebookFacets', {
facet: 'facet.language'
})
},{
title: this.localize('license'),
facet: 'facet.license',
store: Ext.create('Voyant.data.store.NotebookFacets', {
facet: 'facet.license'
})
}]
},{
xtype: 'panel',
region: 'east',
collapsible: true,
collapsed: true,
title: this.localize('suggested'),
flex: 1,
items: [{
}]
}],
closeAction: 'hide',
buttons: [{
text: this.localize('load'),
handler: function(but) {
var record = this.window.down('#catalogue').getSelection()[0]
if (record !== undefined) {
this.fireEvent('notebookSelected', this, record.get('id'))
}
},
scope: this
}]
});
this.window.query('#facets > facet').forEach(function(facetCmp) {
facetCmp.getSelectionModel().on('selectionchange', this._handleFacetSelection.bind(this, facetCmp.facet))
facetCmp.getStore().load();
}, this);
} else {
// reset
this.setFacets({});
this.window.query('#facets > facet').forEach(function(facetCmp) {
facetCmp.getSelectionModel().deselectAll();
});
this.window.down('#queryfield').setValue('');
this.window.down('#catalogue').getSelectionModel().deselectAll();
this.store.removeAll();
}
this.window.show();
},
hideWindow: function() {
if (this.window !== undefined) {
this.window.close();
}
},
_handleFacetSelection: function(facet, model, selected) {
var labels = [];
selected.forEach(function(model) {
labels.push({facet: facet, label: model.getLabel ? model.getLabel() : model.getTerm()})
})
this.getFacets()[facet] = labels;
this.getNotebooks();
},
getNotebooks: function(queries) {
if (!queries) {
queries = [];
var facets = this.getFacets();
for (facet in facets) {
facets[facet].forEach(function(label) {
queries.push(label.facet+":"+label.label);
})
}
var queryfieldstring = this.window.down('#queryfield').getValue();
if (queryfieldstring.trim().length > 0) {
queries.push(queryfieldstring);
}
return this.getNotebooks(queries);
}
if (queries.length === 0) {
this.window.down('#catalogue').getSelectionModel().deselectAll();
this.store.removeAll();
return;
}
this.window.down('#catalogue').mask('Loading');
this.window.down('#catalogue').getSelectionModel().deselectAll();
var me = this;
Spyral.Load.trombone({
tool: 'notebook.NotebookFinder',
query: queries,
noCache: 1
}).then(function(json) {
me.window.down('#catalogue').unmask();
me.store.loadRawData(json.catalogue.notebooks);
me.store.sort('modified', 'DESC');
}).catch(function(err) {
me.window.unmask()
});
}
});

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src/Voyant-master/src/main/webapp/app/notebook/Notebook.js
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src/Voyant-master/src/main/webapp/app/notebook/editor/CodeEditor.js
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Ext.define("Voyant.notebook.editor.CodeEditor", {
extend: "Ext.Component",
alias: "widget.notebookcodeeditor",
mixins: ["Voyant.util.Localization",'Voyant.notebook.util.Embed'],
embeddable: ["Voyant.notebook.editor.CodeEditor"],
cls: 'notebook-code-editor',
config: {
theme: 'ace/theme/chrome',
mode: 'ace/mode/javascript',
content: '',
docs: undefined,
isChangeRegistered: false,
editor: undefined,
editedTimeout: undefined,
lines: 0
},
statics: {
i18n: {
},
api: {
content: undefined
}
},
constructor: function(config) {
this.callParent(arguments);
},
listeners: {
boxready: function() {
var me = this;
var editor = ace.edit(Ext.getDom(this.getEl()));
editor.$blockScrolling = Infinity;
editor.getSession().setUseWorker(true);
editor.setTheme(this.getTheme());
editor.getSession().setMode(this.getMode());
editor.setOptions({
minLines: 6,
maxLines: Infinity, // this.getMode().indexOf("javascript")>-1 ? Infinity : 10,
autoScrollEditorIntoView: true,
scrollPastEnd: true
});
editor.setHighlightActiveLine(false);
editor.setHighlightGutterLine(false);
editor.renderer.setShowPrintMargin(false);
// editor.renderer.setShowGutter(false);
editor.setValue(this.getContent() ? this.getContent() : "" /*this.localize('emptyText')*/);
editor.clearSelection();
editor.on("focus", function() {
setTimeout(function() {
me.getEditor().setHighlightGutterLine(true);
}, 100); // slight delay to avoid selecting a range of text, caused by showing the gutter while mouse is still pressed
}, this);
editor.on("change", function(ev, editor) {
var lines = editor.getSession().getScreenLength();
if (lines!=me.getLines()) {
me.up('notebookcodeeditorwrapper').setSize({height: lines*editor.renderer.lineHeight+editor.renderer.scrollBar.getWidth()})
me.setLines(lines);
}
if (me.getIsChangeRegistered()==false) {
me.setIsChangeRegistered(true);
var wrapper = me.up('notebookcodeeditorwrapper');
if (wrapper) {
wrapper.setIsRun(false);
var notebook = wrapper.up("notebook");
if (notebook) {notebook.setIsEdited(true);}
}
} else {
if (!me.getEditedTimeout()) { // no timeout, so set it to 30 seconds
me.setEditedTimeout(setTimeout(function() {
me.setIsChangeRegistered(false);
}, 30000));
}
}
}, this);
editor.on("blur", function() {
me.getEditor().setHighlightGutterLine(false);
});
editor.commands.addCommand({
name: 'run',
bindKey: {win: "Shift-Enter", mac: "Shift-Enter"}, // additional bindings like alt/cmd-enter don't seem to work
exec: function(editor) {
var wrapper = me.up('notebookcodeeditorwrapper');
if (wrapper) {
wrapper.run();
}
}
});
editor.commands.addCommand({
name: 'rununtil',
bindKey: {win: "Command-Shift-Enter", mac: "Command-Shift-Enter"}, // additional bindings like alt/cmd-enter don't seem to work
exec: function(editor) {
var wrapper = me.up('notebookcodeeditorwrapper');
var notebook = wrapper.up("notebook");
notebook.runUntil(wrapper);
}
});
this.setEditor(editor);
ace.config.loadModule('ace/ext/tern', function (module) {
me.getEditor().setOptions({
/**
* Either `true` or `false` or to enable with custom options pass object that
* has options for tern server: http://ternjs.net/doc/manual.html#server_api
* If `true`, then default options will be used
*/
enableTern: {
/* http://ternjs.net/doc/manual.html#option_defs */
defs: me.docs ? ['browser', 'ecma5', me.docs] : ['ecma5', 'browser'],
plugins: {
doc_comment: {
fullDocs: true
}
},
/**
* (default is true) If web worker is used for tern server.
* This is recommended as it offers better performance, but prevents this from working in a local html file due to browser security restrictions
*/
useWorker: true
},
/**
* when using tern, it takes over Ace's built in snippets support.
* this setting affects all modes when using tern, not just javascript.
*/
enableSnippets: false,
/**
* when using tern, Ace's basic text auto completion is enabled still by default.
* This settings affects all modes when using tern, not just javascript.
* For javascript mode the basic auto completion will be added to completion results if tern fails to find completions or if you double tab the hotkey for get completion (default is ctrl+space, so hit ctrl+space twice rapidly to include basic text completions in the result)
*/
enableBasicAutocompletion: false
});
});
},
removed: function(cmp, container) {
if (cmp.getEditor()) {
cmp.getEditor().destroy();
}
}
},
switchModes: function(mode) {
this.setMode('ace/mode/'+mode);
this.getEditor().getSession().setMode(this.getMode());
// this.getEditor().setOptions({maxLines: this.getMode().indexOf("javascript")>-1 ? Infinity : 10});
},
getValue: function() {
return this.getEditor().getValue();
}
})

637
src/Voyant-master/src/main/webapp/app/notebook/editor/CodeEditorWrapper.js
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Ext.define("Voyant.notebook.editor.CodeEditorWrapper", {
extend: "Voyant.notebook.editor.EditorWrapper",
requires: ["Voyant.notebook.editor.CodeEditor","Voyant.notebook.editor.button.Run","Voyant.notebook.editor.button.RunAll"],
alias: "widget.notebookcodeeditorwrapper",
cls: 'notebook-code-wrapper',
statics: {
i18n: {
runMultiple: "Run multiple cells",
runUntil: "Run up to here",
runUntilTip: "Run previous code blocks and this one.",
runFrom: "Run from here onwards",
runFromTip: "Run this and following code blocks.",
codeMode: "select from several formats for this cell",
codeModeTitle: "Code Mode",
codeModeTip: "Select from multiple code formats for this cell.",
configureTip: "Configuration Options",
autoExecuteOnLoad: "auto-run this cell on page load",
ok: "OK",
cancel: "Cancel"
},
configWin: undefined,
getConfigWindow: function(codeEditorInstance) {
if (this.configWin === undefined) {
this.configWin = new Ext.Window({
title: codeEditorInstance.localize('codeModeTitle'),
closeAction: 'hide',
layout: 'fit',
width: 240,
items: [{
xtype: 'form',
layout: {
type: 'vbox',
align: 'stretch'
},
bodyPadding: 10,
items: [{
xtype: 'fieldset',
title: codeEditorInstance.localize("modeCode"),
items: [{
xtype : 'radiofield',
boxLabel : codeEditorInstance.localize('modeJavascript'),
name : 'codeMode',
inputValue: 'javascript',
flex : 1,
listeners: {
change: function(cmp, newval, oldval) {
var autoExecCheck = cmp.up().queryById('autoExecute');
autoExecCheck.setHidden(!newval);
if (!newval) {
autoExecCheck.setValue(false);
}
}
}
},{
xtype: 'checkbox',
boxLabel: codeEditorInstance.localize('autoExecuteOnLoad'),
name: 'autoExecute',
itemId: 'autoExecute'
}]
},{
xtype: 'fieldset',
title: codeEditorInstance.localize("modeData"),
items: [{
items: {
xtype : 'radiofield',
boxLabel : codeEditorInstance.localize('modeJson'),
name : 'codeMode',
inputValue: 'json',
flex : 1
}
},{
items: {
xtype : 'radiofield',
boxLabel : codeEditorInstance.localize('modeText'),
name : 'codeMode',
inputValue: 'text',
flex : 1
}
},/*{
items: {
xtype : 'radiofield',
boxLabel : codeEditorInstance.localize('modeCsv'),
name : 'codeMode',
inputValue: 'csv',
flex : 1
}
},{
items: {
xtype : 'radiofield',
boxLabel : codeEditorInstance.localize('modeTsv'),
name : 'codeMode',
inputValue: 'tsv',
flex : 1
}
},*/{
items: {
xtype : 'radiofield',
boxLabel : codeEditorInstance.localize('modeHtml'),
name : 'codeMode',
inputValue: 'html',
flex : 1
}
},{
items: {
xtype : 'radiofield',
boxLabel : codeEditorInstance.localize('modeXml'),
name : 'codeMode',
inputValue: 'xml',
flex : 1
}
}]
}]
}],
buttons: [{
text: codeEditorInstance.localize('ok'),
itemId: 'ok'
},{
text: codeEditorInstance.localize('cancel'),
handler: function(btn) {
btn.up('window').close();
},
scope: this
}]
})
}
// set form values
var mode = codeEditorInstance.getMode();
this.configWin.down('radiofield[name=codeMode][inputValue="'+mode+'"]').setValue(true);
this.configWin.down('checkbox#autoExecute').setValue(codeEditorInstance.getAutoExecute());
// set ok handler
this.configWin.down('button#ok').setHandler(function(btn) {
var win = btn.up('window');
var form = win.down('form');
if (form.isDirty()) {
var values = form.getValues();
codeEditorInstance.switchModes(values.codeMode);
codeEditorInstance.setAutoExecute(values.autoExecute === 'on');
codeEditorInstance.down('button#config').toggleCls("autoExecute", values.autoExecute === 'on');
codeEditorInstance.up('notebook').setIsEdited(true);
}
win.close();
});
return this.configWin;
}
},
config: {
isRun: false,
autoExecute: false,
mode: 'javascript',
isWarnedAboutPreviousCells: false,
expandResults: true,
emptyResultsHeight: 40,
minimumResultsHeight: 120
},
layout: {
type: 'vbox',
align: 'stretch'
},
height: 150,
border: false,
EMPTY_RESULTS_TEXT: ' ', // text to use when clearing results, prior to running code
constructor: function(config) {
config.mode = config.mode !== undefined ? config.mode : this.config.mode;
var runnable = config.mode.indexOf('javascript') > -1;
this.editor = Ext.create("Voyant.notebook.editor.CodeEditor", {
content: Ext.Array.from(config.input).join("\n"),
docs: config.docs,
mode: 'ace/mode/'+config.mode
});
Ext.apply(this, {
dockedItems: [{
xtype: 'toolbar',
dock: 'left',
defaults: {
textAlign: 'left'
},
items: [
{
xtype: 'notebookwrapperadd'
},{
xtype: 'notebookwrapperrun',
hidden: !runnable,
listeners: {
click: {
fn: this.run,
scope: this
}
}
},{
glyph: 'xf050@FontAwesome',
tooltip: this.localize("runMultiple"),
itemId: 'runMultiple',
// xtype: 'notebookwrapperrununtil',
hidden: !runnable,
listeners: {
click: {
fn: function(btn, ev) {
Ext.create('Ext.menu.Menu', {
items: [{
text: this.localize("runUntil"),
tooltip: this.localize("runUntilTip"),
glyph: 'xf049@FontAwesome',
handler: function() {
this.up('notebook').runUntil(this);
},
scope: this
},{
text: this.localize("runFrom"),
tooltip: this.localize("runFromTip"),
glyph: 'xf050@FontAwesome',
handler: function() {
this.up('notebook').runFrom(this);
},
scope: this
}]
}).showAt(ev.pageX, ev.pageY)
},
scope: this
}
}
},{
xtype: 'button',
itemId: 'config',
glyph: 'xf013@FontAwesome',
tooltip: this.localize("configureTip"),
cls: config.autoExecute ? "autoExecute" : "",
handler: function(btn, ev) {
Voyant.notebook.editor.CodeEditorWrapper.getConfigWindow(this).show();
},
scope: this
},{
xtype: "notebookwrapperexport",
hidden: runnable
}
]
},{
xtype: 'toolbar',
dock: 'right',
items: [{
xtype: 'notebookwrappercounter',
order: config.order,
name: config.cellId
},{
xtype: 'notebookwrapperremove'
},{
xtype: 'notebookwrappermoveup'
},{
xtype: 'notebookwrappermovedown'
}
]
}],
items: [this.editor]
});
if (config.uiHtml !== undefined) {
this.items.push(this._getUIComponent(config.uiHtml))
}
this.results = this._getResultsComponent(Ext.Array.from(config.output).join(""), config);
this.results.setVisible(runnable);
this.items.push(this.results);
this.callParent(arguments);
},
initComponent: function(config) {
var me = this;
me.on("afterrender", function() {
this.getTargetEl().on("resize", function(el) {
me._setResultsHeight();
var height = 20;
me.items.each(function(item) {height+=item.getHeight();})
me.setSize({height: height});
});
}, this);
me.callParent(arguments);
},
switchModes: function(mode) {
this.setMode(mode);
this.editor.switchModes(mode);
var runnable = mode.indexOf('javascript') > -1;
this.down('notebookwrapperrun').setVisible(runnable);
this.down('notebookwrapperexport').setVisible(!runnable);
this.queryById("runMultiple").setVisible(runnable);
this.results.setVisible(runnable);
},
/**
* Run the code in this editor.
* @param {boolean} forceRun True to force the code to run, otherwise a check is performed to see if previous editors have already run.
*/
run: function(forceRun) {
if (this.editor.getMode()==='ace/mode/javascript') { // only run JS
if (forceRun===true || this.getIsWarnedAboutPreviousCells()) {
return this._run();
} else {
// this code was for checking if previous cells hadn't been run, but it didn't seem worthwhile
var notebook = this.up('notebook');
Ext.Array.each(notebook.query('notebookcodeeditorwrapper'), function(wrapper) {
if (wrapper===this) {this._run(); return false;} // break
if (wrapper.editor && wrapper.editor.getMode() === 'ace/mode/javascript' && wrapper.getIsRun()===false) {
Ext.Msg.confirm(this.localize('previousNotRunTitle'), this.localize('previousNotRun'), function(btnId) {
if (btnId==='yes') {
notebook.runUntil(this);
} else {
this._run();
}
}, this);
this.setIsWarnedAboutPreviousCells(true);
return false;
}
}, this);
}
}
},
_run: function() {
this.results.show(); // make sure it's visible
this.results.update(this.EMPTY_RESULTS_TEXT); // clear out the results
this.results.mask('working…'); // mask results
var code = this.editor.getValue();
Voyant.notebook.util.Show.TARGET = this.results.getResultsEl(); // this is for output
Voyant.notebook.Notebook.currentBlock = this; // this is to tie back in to the block
Voyant.notebook.Notebook.currentNotebook.setCurrentBlock(this);
var result;
try {
// I'd like to be able to run this in another scope/context, but it
// doesn't seem possible for the type of code that's being run
result = eval.call(window, code);
}
catch (e) {
this.results.unmask();
Voyant.notebook.util.Show.showError(e);
this.getTargetEl().fireEvent('resize');
return e;
}
this.setIsRun(true);
if (result!==undefined) {
if (result.then && result.catch && result.finally) {
var me = this;
result.then(function(result) {
me.results.unmask();
if (result!==undefined) {
me._showResult(result);
}
}).catch(function(err) {
me.results.unmask();
Voyant.notebook.util.Show.showError(err);
}).finally(function() {
Ext.defer(function() {this.getTargetEl().fireEvent('resize')}, 50, me);
})
} else {
this.results.unmask();
this._showResult(result);
this.getTargetEl().fireEvent('resize');
}
} else {
this.results.unmask();
this.getTargetEl().fireEvent('resize');
}
return result;
},
_getResultsComponent: function(html, config) {
var me = this;
var isExpanded = config.expandResults === undefined ? me.config.expandResults : config.expandResults;
var height = me.config.emptyResultsHeight;
return Ext.create('Ext.Container', {
itemId: 'parent',
cls: 'notebook-code-results',
height: height,
layout: {
type: 'vbox',
align: 'stretch'
},
items: [{
xtype: 'container',
flex: 1,
layout: {
type: 'absolute'
},
items: [{
xtype: 'component',
itemId: 'results',
x: 0,
y: 0,
anchor: '100%',
height: '100%',
html: html
},{
xtype: 'toolbar',
itemId: 'buttons',
hidden: true,
x: 0,
y: 0,
style: { background: 'none', paddingTop: '0px', pointerEvents: 'none' },
defaults: { style: { pointerEvents: 'auto'} },
items: ['->',{
itemId: 'expandButton',
glyph: isExpanded ? 'xf066@FontAwesome' : 'xf065@FontAwesome',
tooltip: isExpanded ? 'Contract Results' : 'Expand Results',
handler: function() {
me.results.doExpandContract();
}
},{
xtype: 'notebookwrapperexport',
exportType: 'output'
},{
glyph: 'xf014@FontAwesome',
tooltip: 'Remove Results',
handler: function() {
me.clearResults();
}
}]
}]
},{
xtype: 'component',
itemId: 'expandWidget',
height: 20,
hidden: isExpanded ? true : false,
style: {textAlign: 'center', fontSize: '26px', cursor: 'pointer', borderTop: '1px solid #DDD'},
html: '&#8943;',
listeners: {
afterrender: function(cmp) {
cmp.getEl().on('click', function() {
me.results.doExpandContract();
})
}
}
}],
getValue: function() {
var resultEl = this.getResultsEl().dom.cloneNode(true);
var output = resultEl.innerHTML;
return output;
},
getResultsEl: function() {
return this.down('#results').getEl();
},
doExpandContract: function() {
var expandButton = me.results.down('#expandButton');
if (me.getExpandResults()) {
me.setExpandResults(false);
expandButton.setTooltip('Expand Results');
expandButton.setGlyph('xf065@FontAwesome');
} else {
me.setExpandResults(true);
expandButton.setTooltip('Contract Results');
expandButton.setGlyph('xf066@FontAwesome');
}
me.getTargetEl().fireEvent('resize');
},
// override update method and call it on results child instead
update: function() {
var results = this.down('#results');
results.update.apply(results, arguments);
},
listeners: {
afterrender: function(cmp) {
cmp.getEl().on('mouseover', function(event, el) {
cmp.down('#buttons').setVisible(true);
});
cmp.getEl().on('mouseout', function(event, el) {
cmp.down('#buttons').setVisible(false);
});
}
}
});
},
_getUIComponent: function(html) {
return Ext.create('Ext.Component', {
align: 'stretch',
cls: 'notebook-code-ui',
padding: '20 10',
html: html,
getValue: function() {
const el = this.getTargetEl()
const resultEl = el.dom.cloneNode(true);
let output = resultEl.innerHTML;
return output;
}
});
},
_showResult: function(result) {
// check for pre-existing content (such as from highcharts) and if it exists don't update
if (this.results.getResultsEl().dom.innerHTML === this.EMPTY_RESULTS_TEXT) {
if (result.toString) {result = result.toString()}
if (result && result.then) {
var me = this;
result.then(out => {
me.results.update(out);
return out;
})
} else {
this.results.update(result);
}
}
},
/**
* Set the height of the results component
*/
_setResultsHeight: function() {
var height = this._measureResultsHeight();
var resultsEl = this.results.getResultsEl();
var expandWidget = this.results.down('#expandWidget');
if (this.getExpandResults()) {
expandWidget.hide();
this.results.setHeight(Math.max(height, this.getEmptyResultsHeight()));
resultsEl.removeCls('collapsed');
} else {
height = Math.min(Math.max(height, this.getEmptyResultsHeight()), this.getMinimumResultsHeight());
if (height < this.getMinimumResultsHeight()) {
expandWidget.hide();
} else {
expandWidget.show();
}
this.results.setHeight(height);
resultsEl.addCls('collapsed');
}
},
_measureResultsHeight: function() {
if (this.results.paddingHeight === undefined) {
// compute and store parent padding, which we'll need when determining proper height
var computedStyle = window.getComputedStyle(this.results.getEl().dom);
this.results.paddingHeight = parseFloat(computedStyle.getPropertyValue('padding-top'))+parseFloat(computedStyle.getPropertyValue('padding-bottom'));
}
var resultsEl = this.results.getResultsEl();
var resultsChildHeight = undefined;
if (resultsEl.dom.childElementCount > 0) {
// child might be taller than the results el (e.g. in the case of highcharts)
resultsChildHeight = resultsEl.getFirstChild().getHeight() + this.results.paddingHeight;
} else if (resultsEl.dom.firstChild !== null && resultsEl.dom.firstChild.nodeType === Node.TEXT_NODE) {
// calculate text height
var textHeight = Ext.util.TextMetrics.measure(resultsEl, resultsEl.dom.firstChild.data, resultsEl.getWidth()).height;
resultsChildHeight = textHeight + this.results.paddingHeight;
} else {
// no results?
resultsChildHeight = this.getEmptyResultsHeight();
}
return resultsChildHeight;
},
clearResults: function() {
this.results.show();
var panel = this.results.el.down('.x-panel');
if (panel) {
var id = panel.id;
var cmp = Ext.getCmp(id);
if (cmp) {
cmp.destroy();
} else {
panel.destroy();
}
} else if (this.results.getResultsEl().dom.hasAttribute('data-highcharts-chart')) {
var chartId = this.results.getResultsEl().dom.id;
var highchart = undefined;
Highcharts.charts.forEach(function(chart) {
if (chart !== undefined && chart.renderTo.id === chartId) {
highchart = chart;
}
})
if (highchart) {
highchart.destroy();
// remove highcharts style changes from results element
var resultsDom = this.results.getResultsEl().dom;
resultsDom.style.height = '100%';
resultsDom.style.overflow = '';
} else {
console.warn('tried to destroy highchart but could not', chartId);
}
} else {
this.results.update(' ');
}
this.getTargetEl().fireEvent('resize');
},
tryToUnmask: function() {
if (Spyral && Spyral.promises) {
Ext.defer(this.tryToUnmask, 20, this);
}
if (Voyant.application.getDeferredCount()===0) {
for (var key in window) {
if (typeof window[key] == 'object' && window[key] && key!="opener" && window[key].isFulfilled && window[key].isFulfilled()) {
window[key] = window[key].valueOf();
}
}
this.results.unmask();
if (this.results.getTargetEl().getHtml().trim().length===0) {
this.results.hide();
}
this.getTargetEl().fireEvent('resize');
}
else {
Ext.defer(this.tryToUnmask, 20, this);
}
},
getContent: function() {
var toReturn = {
input: this.editor.getValue(),
mode: this.getMode()
}
if (toReturn.mode==='javascript') {
toReturn.output = this.results.getValue();
var ui = this.down('component[cls="notebook-code-ui"]');
if (ui !== null) {
toReturn.ui = ui.getValue();
}
}
return toReturn;
},
setContentAndMode: function(content, mode, config) {
debugger
this.editor.setContent(content);
this.switchModes(mode || "javascript")
}
})

54
src/Voyant-master/src/main/webapp/app/notebook/editor/EditorWrapper.js
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Ext.define("Voyant.notebook.editor.EditorWrapper", {
extend: "Ext.panel.Panel",
mixins: ["Voyant.util.Localization"],
requires: ["Voyant.notebook.editor.button.Movement","Voyant.notebook.editor.button.Add"],
alias: "widget.notebookeditorwrapper",
cls: "notebook-editor-wrapper",
config: {
cellId: undefined,
content: '',
isEditing: false
},
border: false,
bodyBorder: false,
initComponent: function() {
this.setCellId(this.config.cellId);
this.on("afterrender", function(){
this.getDockedItems().forEach(function(tb) {
tb.getTargetEl().setVisibilityMode(Ext.dom.Element.VISIBILITY);
});
this.setActiveMode(false);
this.body.on("click", function() {
this.removeCls("notebook-editor-wrapper-hover");
this.setActiveMode(true); // added for touch devices
}, this);
this.mon(this.getEl(), "mouseover", function() {
this.setActiveMode(true);
}, this);
this.mon(this.getEl(), "mouseout", function() {
this.setActiveMode(false);
}, this);
}, this);
this.callParent(arguments);
},
setActiveMode: function(mode) {
this.getDockedItems().forEach(function(tb) {
if (tb.dock=='right') {
tb.items.each(function(item) {
if (item.hasCls("notebookwrappercounter")==false) {
item.getTargetEl().setVisibility(mode);
}
})
} else {
tb.getTargetEl().setVisibility(mode);
}
}, this);
if (!this.getIsEditing()) {
if (mode) {
this.body.addCls("notebook-editor-wrapper-hover");
} else {
this.body.removeCls("notebook-editor-wrapper-hover");
}
}
}
})

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src/Voyant-master/src/main/webapp/app/notebook/editor/TextEditor.js
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Ext.define("Voyant.notebook.editor.TextEditor", {
extend: "Ext.Component",
mixins: ["Voyant.util.Localization"],
alias: "widget.notebooktexteditor",
cls: 'notebook-text-editor',
config: {
ckeditorConfig : { // when upgrading ckeditor, remember to copy stopediting and inserthtml4x plugins
toolbar: [
{ name: 'basicstyles', items: [ 'Bold', 'Italic', '-', 'RemoveFormat' ] },
{ name: 'paragraph', items: [ 'NumberedList', 'BulletedList', '-', 'Justify', 'Outdent', 'Indent', 'Blockquote', 'JustifyLeft', 'JustifyCenter', 'JustifyRight' ] },
{ name: 'colors', items: [ 'TextColor', 'BGColor' ] },
{ name: 'styles', items: [ 'Styles', 'Format' ] },
{ name: 'links', items: [ 'Link', 'Unlink', 'Anchor'] },
{ name: 'insert', items: [ 'Image', 'Table' ] },
{ name: 'document', items: [ 'inserthtml4x', 'Sourcedialog', 'Stopediting'] }
],
extraPlugins: 'stopediting,sourcedialog,justify,colorbutton,inserthtml4x',
allowedContent: true,
toolbarCanCollapse: false,
startupFocus: true
},
editor: undefined,
isEditRegistered: false,
currentHeight: 0
},
statics: {
i18n: {
}
},
border: false,
constructor: function(config) {
Ext.apply(this, {
html: config.content ? config.content : this.localize("emptyText")
});
this.callParent(arguments);
},
listeners: {
boxready: function(cmp) {
this.getTargetEl().on("click", function(e, t) {
if (t.tagName!="A") {
this.handleClick(cmp);
}
}, this);
},
removed: function(cmp, container) {
// properly remove editor
if (cmp.getEditor()) {
cmp.getEditor().focusManager.blur(true); //focusManager bug workaround, see: https://dev.ckeditor.com/ticket/16825
cmp.getEditor().destroy();
}
}
},
handleClick: function(cmp) {
if (!cmp.getEditor() || (cmp.getEditor() && cmp.getEditor().readOnly)) {
var el = this.getTargetEl();
el.set({contenteditable: true});
this.findParentByType("notebookeditorwrapper").setIsEditing(true);
if (!cmp.getEditor()) {
var editor = CKEDITOR.inline( el.dom, this.getCkeditorConfig() );
// erase contents if it's click to edit (not localized, FIXME
editor.on("focus", function(evt) {
if (this.getTargetEl().dom.innerText==this.localize("emptyText")) {
this.getTargetEl().update('')
}
}, this)
editor.on("blur", function(evt) {
// cmp.setEditor(undefined);
cmp.findParentByType("notebookeditorwrapper").setIsEditing(false).getEl().fireEvent("mouseout");
// el.set({contenteditable: false});
editor.setReadOnly(true);
})
editor.on("change", function() {
var editorHeight = editor.container.$.clientHeight;
if (editorHeight!=this.getCurrentHeight()) {
this.findParentByType("notebookeditorwrapper").setHeight(editorHeight);
this.setCurrentHeight(editor.container.$.clientHeight)
}
if (!this.getIsEditRegistered()) {
this.findParentByType("notebook").setIsEdited(true);
this.setIsEditRegistered(true);
} else {
var me = this; // make sure to allow edits to be auto-saved every 30 seconds
setTimeout(function() {
me.setIsEditRegistered(false);
}, 30000);
}
}, this)
this.setEditor(editor);
} else {
cmp.getEditor().setReadOnly(false);
}
}
},
getContent: function() {
return this.getTargetEl().dom.innerHTML;
}
})

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src/Voyant-master/src/main/webapp/app/notebook/editor/TextEditorWrapper.js
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Ext.define("Voyant.notebook.editor.TextEditorWrapper", {
extend: "Voyant.notebook.editor.EditorWrapper",
requires: ["Voyant.notebook.editor.TextEditor","Voyant.notebook.editor.button.Edit"],
alias: "widget.notebooktexteditorwrapper",
cls: 'notebook-text-wrapper',
config: {
content: ''
},
minHeight: 85,
constructor: function(config) {
Ext.apply(this, {
items: [{
xtype: 'notebooktexteditor',
content: Ext.Array.from(config.input).join("")
}],
dockedItems: [{
xtype: 'toolbar',
dock: 'left',
items: [{
xtype: 'notebookwrapperadd'
}
]
},{
xtype: 'toolbar',
dock: 'right',
items: [{
xtype: 'notebookwrappercounter',
order: config.order,
name: config.cellId
},{
xtype: 'notebookwrapperremove'
},{
xtype: 'notebookwrappermoveup'
},{
xtype: 'notebookwrappermovedown'
}
]
}]
});
this.callParent(arguments);
},
getContent: function() {
return this.items.get(0).getContent();
}
})

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src/Voyant-master/src/main/webapp/app/notebook/editor/button/Add.js
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Ext.define("Voyant.notebook.editor.button.Add", {
extend: "Ext.button.Button",
mixins: ["Voyant.util.Localization"],
alias: 'widget.notebookwrapperadd',
statics: {
i18n: {
}
},
constructor: function(config) {
Ext.apply(this, {
tooltip: this.localize('tip')
})
this.callParent(arguments);
},
glyph: 'xf067@FontAwesome',
textAlign: 'left',
listeners: {
click: function(btn, e) {
this.findParentByType('notebook').fireEvent("notebookWrapperAdd", this.findParentByType("notebookeditorwrapper"), e);
}
}
})

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src/Voyant-master/src/main/webapp/app/notebook/editor/button/Counter.js
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Ext.define("Voyant.notebook.editor.button.Counter", {
extend: "Ext.toolbar.TextItem",
mixins: ["Voyant.util.Localization"],
alias: 'widget.notebookwrappercounter',
statics: {
i18n: {
}
},
config: {
order: 0,
name: undefined
},
cls: 'notebookwrappercounter',
constructor: function(config) {
Ext.apply(this, {
toolTip: this.localize('tip')
})
this.callParent(arguments);
},
setOrder: function(pos) {
this.callParent(arguments);
this.updateHtml();
},
updateHtml: function() {
var pos = this.getOrder()+1;
var lnk = 'spyralcounter_'+pos;
var name = this.getName();
this.setHtml('<a name="'+name+'" href="#'+name+'">'+pos+'</a>');
}
})

21
src/Voyant-master/src/main/webapp/app/notebook/editor/button/Edit.js
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Ext.define("Voyant.notebook.editor.button.Edit", {
extend: "Ext.button.Button",
mixins: ["Voyant.util.Localization"],
alias: 'widget.notebookwrapperedit',
statics: {
i18n: {
}
},
constructor: function(config) {
Ext.apply(this, {
toolTip: this.localize('tip')
})
this.callParent(arguments);
},
glyph: 'xf040@FontAwesome',
listeners: {
click: function() {
this.findParentByType('notebook').fireEvent("notebookWrapperEdit", this.findParentByType("notebookeditorwrapper"));
}
}
})

108
src/Voyant-master/src/main/webapp/app/notebook/editor/button/Export.js
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Ext.define("Voyant.notebook.editor.button.Export", {
extend: "Ext.button.Button",
mixins: ["Voyant.util.Localization"],
alias: 'widget.notebookwrapperexport',
statics: {
i18n: {
tip: "Export",
exportTitle: "Export",
exportOpen: "Export content into new window",
exportDownload: "Download file to your machine",
cancelTitle: "Cancel"
},
exportWin: undefined,
getExportWindow: function(instance) {
if (this.exportWin === undefined) {
this.exportWin = Ext.create('Ext.window.Window', {
title: instance.localize("exportTitle"),
closeAction: 'hide',
modal: true,
bodyPadding: 5,
layout: {
type: 'vbox',
align: 'stretch'
},
defaults: {
xtype: 'button'
},
items: [{
itemId: 'open',
text: instance.localize('exportOpen'),
glyph: 'xf08e@FontAwesome'
},{
itemId: 'download',
margin: '5 0 0 0',
preventDefault: false,
text: instance.localize('exportDownload'),
glyph: 'xf019@FontAwesome',
handler: function(btn) {
btn.up('window').close();
}
}],
buttons: [{
text: instance.localize("cancelTitle"),
glyph: 'xf00d@FontAwesome',
handler: function(btn) {
btn.up('window').close();
}
}]
});
}
var wrapper = instance.up("notebookcodeeditorwrapper");
var content = wrapper.getContent();
var fileContent = instance.getExportType() === 'output' ? content.output : content.input;
var filename = wrapper.getCellId()+"."+instance.getFileExtension(content.mode);
var properties = {type: content.mode==="text" || true ? "text/plain" : "text/"+content.mode};
var file;
try {
file = new File([fileContent], filename, properties);
} catch (e) {
file = new Blob([fileContent], properties);
}
this.exportWin.down('#open').setHandler(function(btn) {
var myWindow = window.open();
myWindow.document.write(fileContent);
myWindow.document.close();
myWindow.focus();
btn.up('window').close();
});
this.exportWin.addListener('show', function() {
var url = URL.createObjectURL(file);
this.exportWin.down('#download').getEl().set({
download: filename,
href: url
});
}, this, { single: true });
return this.exportWin;
}
},
constructor: function(config) {
Ext.apply(config, {
tooltip: this.localize('tip')
})
this.callParent(arguments);
},
config: {
exportType: 'input' // what type of content to include in the export: 'input' or 'output'
},
glyph: 'xf08e@FontAwesome',
listeners: {
click: function(cmp) {
Voyant.notebook.editor.button.Export.getExportWindow(cmp).show();
}
},
getFileExtension: function(mode) {
if (
mode === 'text' ||
(mode === 'javascript' && this.getExportType() === 'output') // use txt for javascript results because they could be anything
) {
return 'txt';
} else {
return mode;
}
}
})

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src/Voyant-master/src/main/webapp/app/notebook/editor/button/Metadata.js
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Ext.define("Voyant.notebook.editor.button.Metadata", {
extend: "Ext.button.Button",
mixins: ["Voyant.util.Localization"],
alias: 'widget.notebookwrappermetadata',
statics: {
i18n: {
}
},
constructor: function(config) {
Ext.apply(this, {
tooltip: this.localize('tip')
})
this.callParent(arguments);
},
glyph: 'xf02c@FontAwesome',
textAlign: 'left',
listeners: {
click: function(btn, e) {
this.findParentByType('notebook').fireEvent("notebookWrapperMetadata", this.findParentByType("notebookeditorwrapper"), e);
}
}
})

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src/Voyant-master/src/main/webapp/app/notebook/editor/button/MoveDown.js
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Ext.define("Voyant.notebook.editor.button.MoveDown", {
extend: "Ext.button.Button",
mixins: ["Voyant.util.Localization"],
alias: 'widget.notebookwrappermovedown',
statics: {
i18n: {
}
},
constructor: function(config) {
Ext.apply(this, {
tooltip: this.localize('tip')
})
this.callParent(arguments);
},
glyph: 'xf063@FontAwesome',
textAlign: 'left',
listeners: {
click: function() {
this.findParentByType('notebook').fireEvent("notebookWrapperMoveDown", this.findParentByType("notebookeditorwrapper"));
}
}
})

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src/Voyant-master/src/main/webapp/app/notebook/editor/button/MoveUp.js
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Ext.define("Voyant.notebook.editor.button.MoveUp", {
extend: "Ext.button.Button",
mixins: ["Voyant.util.Localization"],
alias: 'widget.notebookwrappermoveup',
statics: {
i18n: {
}
},
constructor: function(config) {
Ext.apply(this, {
tooltip: this.localize('tip')
})
this.callParent(arguments);
},
glyph: 'xf062@FontAwesome',
textAlign: 'left',
listeners: {
click: function() {
this.findParentByType('notebook').fireEvent("notebookWrapperMoveUp", this.findParentByType("notebookeditorwrapper"));
}
}
})

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src/Voyant-master/src/main/webapp/app/notebook/editor/button/Movement.js
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Ext.define("Voyant.notebook.editor.button.Movement", {
extend: "Ext.button.Button",
mixins: ["Voyant.util.Localization"],
requires: ["Voyant.notebook.editor.button.MoveUp", "Voyant.notebook.editor.button.MoveDown", "Voyant.notebook.editor.button.Remove"],
alias: 'widget.notebookwrappermovement',
statics: {
i18n: {
}
},
constructor: function(config) {
Ext.apply(this, {
tooltip: this.localize('tip')
})
this.callParent(arguments);
},
glyph: 'xf07d@FontAwesome',
menu: [
{
xtype: 'notebookwrappermoveup'
},{
xtype: 'notebookwrappermovedown'
},{
xtype: 'notebookwrapperremove'
}
]
})

33
src/Voyant-master/src/main/webapp/app/notebook/editor/button/Remove.js
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Ext.define("Voyant.notebook.editor.button.Remove", {
extend: "Ext.button.Button",
mixins: ["Voyant.util.Localization"],
alias: 'widget.notebookwrapperremove',
statics: {
i18n: {
}
},
constructor: function(config) {
Ext.apply(this, {
tooltip: this.localize('tip')
})
this.callParent(arguments);
},
glyph: 'xf014@FontAwesome',
textAlign: 'left',
listeners: {
click: function() {
Ext.Msg.show({
buttons: Ext.Msg.OKCANCEL,
icon: Ext.MessageBox.QUESTION,
msg: this.localize("confirmRemove"),
title: this.localize("confirmRemoveTitle"),
fn: function(buttonId) {
if (buttonId=='ok') {
this.findParentByType('notebook').fireEvent("notebookWrapperRemove", this.findParentByType("notebookeditorwrapper"));
}
},
scope: this
})
}
}
})

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src/Voyant-master/src/main/webapp/app/notebook/editor/button/Run.js
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Ext.define("Voyant.notebook.editor.button.Run", {
extend: "Ext.button.Button",
mixins: ["Voyant.util.Localization"],
alias: 'widget.notebookwrapperrun',
statics: {
i18n: {
}
},
glyph: 'xf04b@FontAwesome',
constructor: function(config) {
config = config || {};
config.tooltip = this.localize('tip');
this.callParent(arguments);
}
})

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src/Voyant-master/src/main/webapp/app/notebook/editor/button/RunAll.js
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Ext.define("Voyant.notebook.editor.button.RunAll", {
extend: "Ext.button.Button",
mixins: ["Voyant.util.Localization"],
alias: 'widget.notebookwrapperrunall',
statics: {
i18n: {
}
},
glyph: 'xf04e@FontAwesome',
constructor: function(config) {
config = config || {};
config.tooltip = this.localize('tip');
this.callParent(arguments);
}
})

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src/Voyant-master/src/main/webapp/app/notebook/editor/button/RunUntil.js
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Ext.define("Voyant.notebook.editor.button.RunUntil", {
extend: "Ext.button.Button",
mixins: ["Voyant.util.Localization"],
alias: 'widget.notebookwrapperrununtil',
statics: {
i18n: {
}
},
glyph: 'xf050@FontAwesome',
constructor: function(config) {
config = config || {};
config.tooltip = this.localize('tip');
this.callParent(arguments);
}
})

247
src/Voyant-master/src/main/webapp/app/notebook/storage/github/FileSaver.js
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Ext.define("Voyant.notebook.github.FileSaver", {
extend: "Ext.container.Container",
xtype: "githubfilesaver",
config: {
currentFile: undefined,
username: undefined
},
octokit: undefined,
saveData: undefined,
constructor: function(config) {
config = config || {};
this.octokit = config.octokit;
this.saveData = config.saveData;
this.setCurrentFile(config.currentFile);
this.callParent(arguments);
},
initComponent: function() {
Ext.apply(this, {
layout: {
type: 'vbox',
pack: 'start',
align: 'stretch'
},
items: [{
xtype: 'githubreposbrowser',
octokit: this.octokit,
itemId: 'repoBrowser',
flex: 1,
listeners: {
nodeSelected: function(src, type, node) {
const form = this.queryById('saveForm').getForm();
const [owner, repo] = src.getRepoId().split('/');
form.setValues({owner, repo});
if (type === 'file') {
const pathComponents = this.getPathComponents(src.getPath());
form.setValues({...pathComponents});
} else if (type === 'folder') {
const folder = src.getPath().replace(/^\//, '');
form.setValues({folder, file: ''});
} else if (type === 'repo') {
form.setValues({folder: '', file: ''});
}
},
nodeDeselected: function(node) {
// loadWin.queryById('load').setDisabled(true);
},
scope: this
}
},{
bodyPadding: '10',
height: 200,
layout: {
type: 'vbox',
pack: 'start'
},
xtype: 'form',
itemId: 'saveForm',
items: [{
html: '<span class="x-panel-header-title-default">Repository Path</span>'
},{
xtype: 'container',
layout: 'hbox',
defaults: {
xtype: 'textfield',
labelAlign: 'top'
},
items: [{
fieldLabel: 'GitHub User',
name: 'owner',
allowBlank: false,
margin: '0 10 0 0'
},{
fieldLabel: 'Repository Name',
allowBlank: false,
name: 'repo'
}]
},{
html: '<span class="x-panel-header-title-default">File Path</span>',
margin: '10 0 0 0',
},{
xtype: 'container',
layout: 'hbox',
defaults: {
xtype: 'textfield',
labelAlign: 'top'
},
items: [{
fieldLabel: 'Folder(s)',
name: 'folder',
allowBlank: true,
margin: '0 10 0 0'
},{
fieldLabel: 'File Name',
allowBlank: false,
name: 'file'
}]
},{
/*
xtype: 'container',
width: '100%',
layout: {
type: 'hbox',
align: 'middle',
pack: 'start'
},
margin: '25 0 0 0',
defaults: {
xtype: 'button'
},
items: [{
text: 'Save',
handler: function () {
this.doSave(false);
},
scope: this,
margin: '0 10 0 0'
}
// ,{
// text: 'Save as Pull Request',
// handler: function () {
// this.doSave(true);
// },
// scope: this
// }
]
},{
*/
itemId: 'status',
html: '',
margin: '15 0 0 0'
}],
listeners: {
validitychange: function(form, valid) {
this.fireEvent('formValidityChange', this, valid);
},
scope: this
}
}],
listeners: {
boxready: function() {
this.initForm();
},
scope: this
}
});
this.callParent(arguments);
},
initForm: function() {
this.octokit.getInfoForAuthenticatedUser().then(function(resp) {
const username = resp.data.login;
this.setUsername(username);
const form = this.queryById('saveForm').getForm();
const currentFile = this.getCurrentFile();
if (currentFile !== undefined) {
const pathComponents = this.getPathComponents(currentFile.path);
form.setValues({
owner: currentFile.owner,
repo: currentFile.repo,
...pathComponents
});
} else {
form.setValues({owner: username});
}
}.bind(this))
},
getPathComponents: function(path) {
const pathComponents = path.split('/');
let file = pathComponents[pathComponents.length-1];
let folder = '';
if (pathComponents.length > 2) {
folder = pathComponents.slice(0, -1).join('/');
}
return {
folder,
file
}
},
doSave: async function(isPR=false) {
const form = this.queryById('saveForm').getForm();
if (form.isValid()) {
const {owner, repo, folder, file} = form.getValues();
let path = file;
if (folder !== '') {
path = folder+'/'+file;
}
this.setStatus('Checking repository');
const repoExists = await this.octokit.doesRepoExist(owner, repo);
if (repoExists) {
this.setStatus('Checking permissions');
const permission = await this.octokit.getPermissionsForUser(owner, repo, this.getUsername());
if (permission === 'none' || permission === 'read') {
this.setStatus('You don\'t have permission to write to this repository', 'error');
} else {
this.setStatus('Checking file');
const branch = 'master';
const content = this.saveData;
const fileData = {owner, repo, branch, path};
const sha = await this.octokit.getLatestFileSHA(fileData);
if (sha !== undefined) {
const message = 'File updated by Spyral';
this.octokit.saveFile(owner, repo, path, content, branch, message, sha).then(function(resp) {
this.setStatus('File updated');
setTimeout(function() {
this.fireEvent('fileSaved', this, fileData);
}.bind(this), 500);
}.bind(this), function(error) {
this.setStatus('Error: '+error.message, 'error');
});
} else {
const message = 'File created by Spyral';
this.octokit.saveFile(owner, repo, path, content, branch, message).then(function(resp) {
this.setStatus('File created');
setTimeout(function() {
this.fireEvent('fileSaved', this, fileData);
}.bind(this), 500);
}.bind(this), function(error) {
this.setStatus('Error: '+error.message, 'error');
});
}
}
} else {
this.setStatus('The specified repository does not exist', 'error');
}
} else {
this.setStatus('Form is not valid', 'error');
}
},
setStatus: function(message, type) {
let cls = '';
if (type && type === 'error') {
cls = 'x-form-invalid-under-default';
}
this.queryById('status').setHtml(`<span class="${cls}">${message}</span>`);
}
});

224
src/Voyant-master/src/main/webapp/app/notebook/storage/github/GitHubDialogs.js
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Ext.define("Voyant.notebook.github.GitHubDialogs", {
extend: "Ext.Component",
requires: ['Voyant.notebook.github.OctokitWrapper','Voyant.notebook.github.ReposBrowser','Voyant.notebook.github.FileSaver'],
alias: "widget.githubdialogs",
config: {
repoType: 'owner',
currentFile: undefined
},
authToken: undefined,
octokitWrapper: undefined,
currentWindow: undefined,
constructor: function(config) {
config = config || {};
this.callParent(arguments);
},
initComponent: function() {
this.callParent(arguments);
},
close: function() {
if (this.currentWindow !== undefined) {
this.currentWindow.close();
this.currentWindow = undefined;
}
},
showAuthenticate: function(callback) {
const parent = this;
let authWin = undefined;
authWin = Ext.create('Ext.window.Window', {
title: 'Authenticate with GitHub',
width: 750,
height: 550,
closable: false,
layout: {
type: 'vbox',
align: 'middle',
pack: 'center'
},
items: [{
html: '<div style="margin-bottom: 10px;">You must authorize Spyral to use GitHub on your behalf.</div>'
},{
xtype: 'button',
text: 'Authorize with GitHub',
handler: function(button) {
function postMessageHandler(event) {
if (event.origin === window.location.origin && event.data === 'oauth_cookie_set') {
window.removeEventListener("message", postMessageHandler, false);
event.source.close();
parent.initOctokitWrapper();
button.up('window').close();
callback.call(parent);
}
}
window.open(Voyant.application.getBaseUrlFull()+'spyral/oauth', '_blank');
window.addEventListener("message", postMessageHandler, false);
}
}],
buttons: [{
text: 'Cancel',
handler: function() {
parent.close();
}
}]
});
authWin.show();
this.currentWindow = authWin;
},
showLoad: function() {
const parent = this;
this.authToken = this.getCookieValue('access-token');
if (this.authToken === '') {
this.showAuthenticate(this.showLoad);
return;
} else if (this.octokitWrapper === undefined) {
this.initOctokitWrapper();
}
let loadWin = undefined;
loadWin = Ext.create('Ext.window.Window', {
title: 'Load from GitHub',
width: 750,
height: 550,
closable: false,
maximizable: true,
layout: 'fit',
items: {
xtype: 'githubreposbrowser',
octokit: this.octokitWrapper,
itemId: 'repoBrowser',
listeners: {
nodeSelected: function(src, type, node) {
if (type === 'file') {
loadWin.queryById('load').setDisabled(false);
} else {
loadWin.queryById('load').setDisabled(true);
}
},
nodeDeselected: function(node) {
loadWin.queryById('load').setDisabled(true);
}
}
},
buttons: [{
text: 'Load Selected',
itemId: 'load',
disabled: true,
handler: function() {
const repoBrowser = loadWin.queryById('repoBrowser');
this.loadFile(repoBrowser.getRepoId(), repoBrowser.getPath());
},
scope: this
},{
text: 'Cancel',
handler: function() {
parent.close();
}
}]
});
loadWin.show();
this.currentWindow = loadWin;
},
showSave: function(data) {
const parent = this;
this.authToken = this.getCookieValue('access-token');
if (this.authToken === '') {
this.showAuthenticate();
return;
} else if (this.octokitWrapper === undefined) {
this.initOctokitWrapper();
}
let saveWin = undefined;
saveWin = Ext.create('Ext.window.Window', {
title: 'Save to GitHub',
width: 750,
height: 650,
closable: false,
maximizable: true,
layout: 'fit',
items: {
xtype: 'githubfilesaver',
octokit: this.octokitWrapper,
currentFile: this.getCurrentFile(),
saveData: data,
itemId: 'fileSaver',
listeners: {
formValidityChange: function(src, valid) {
saveWin.queryById('save').setDisabled(!valid);
},
fileSaved: function(src, fileData) {
parent.fireEvent('fileSaved', parent, fileData);
}
}
},
buttons: [{
text: 'Save',
itemId: 'save',
disabled: true,
handler: function() {
saveWin.queryById('fileSaver').doSave();
},
scope: this
},{
text: 'Cancel',
handler: function() {
parent.close();
parent.fireEvent('saveCancelled', parent);
}
}]
});
saveWin.show();
this.currentWindow = saveWin;
},
getCookieValue: function(cookieName) {
const re = new RegExp('[; ]'+cookieName+'=([^\\s;]*)');
const sMatch = (' '+document.cookie).match(re);
if (cookieName && sMatch) return unescape(sMatch[1]);
return '';
},
initOctokitWrapper: function() {
this.authToken = this.getCookieValue('access-token');
this.octokitWrapper = new Voyant.notebook.github.OctokitWrapper({
authToken: this.authToken
});
},
loadFileFromId: function(id) {
const parts = decodeURIComponent(id).split('/');
if (parts.length >= 3) {
const repoId = parts[0]+'/'+parts[1];
const filePath = parts.slice(2).join('/');
this.loadFile(repoId, filePath);
}
},
loadFile: function(repoId, filePath) {
this.authToken = this.getCookieValue('access-token');
if (this.authToken === '') {
this.showAuthenticate(this.loadFile.bind(this, repoId, filePath));
return;
} else if (this.octokitWrapper === undefined) {
this.initOctokitWrapper();
}
this.octokitWrapper.loadFile(repoId, filePath).then((data) => {
this.setCurrentFile(data);
this.fireEvent('fileLoaded', this, data);
});
}
})

188
src/Voyant-master/src/main/webapp/app/notebook/storage/github/OctokitWrapper.js
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Ext.define("Voyant.notebook.github.OctokitWrapper", {
extend: "Ext.Base",
alias: "octokitwrapper",
octokit: undefined,
constructor: function(config) {
const authToken = config.authToken;
this.octokit = new Octokit({
auth: authToken,
userAgent: 'https://github.com/sgsinclair/Voyant'
});
},
getInfoForAuthenticatedUser: function() {
return this.octokit.users.getAuthenticated();
},
getReposForAuthenticatedUser: function(affiliation='owner', page=0, per_page=10) {
return this.octokit.repos.listForAuthenticatedUser({
affiliation,
page,
per_page
});
},
getReposForUser: function(owner, page=0, per_page=10) {
return this.octokit.search.repos({
q: 'user:'+owner,
page,
per_page
})
},
searchWithinRepositories: function(query, page=0, per_page=10) {
console.log(query);
},
getRepoContents: function(repoId) {
let {owner, repo} = this.parseFullName(repoId);
return this.getBranchSHAs({owner, repo, branch: 'master'}).then(function(resp) {
return this.getTreeContentsRecursively(resp);
}.bind(this));
},
getTreeContentsRecursively: function(params) {
return this.octokit.git.getTree({
owner: params.owner,
repo: params.repo,
tree_sha: params.baseTreeSHA,
recursive: 1,
headers: {
'If-None-Match': '' // cache busting
}
}).then(function (resp) {
return {
...params,
contents: this.unflattenContents(resp.data.tree),
truncated: resp.data.truncated
}
}.bind(this));
},
loadFile: function(repoId, path) {
let {owner, repo} = this.parseFullName(repoId);
let ref = 'master';
return this.octokit.repos.getContents({
owner, repo, ref, path
}).then(function(resp) {
return {
owner, repo, ref, path,
sha: resp.data.sha,
file: atob(resp.data.content)
}
}.bind(this));
},
// SAVING
doesRepoExist: function(owner, repo) {
return this.getRepoContents(owner+'/'+repo).then(function(resp) {
return true;
}.bind(this), function(err) {
console.log(err);
return false;
}.bind(this));
},
getPermissionsForUser: function(owner, repo, username) {
return this.octokit.repos.getCollaboratorPermissionLevel({
owner, repo, username
}).then(function(resp) {
return resp.data.permission;
}.bind(this), function(err) {
return 'none';
}.bind(this));
},
saveFile: async function(owner, repo, path, content, branch, message, sha) {
if (sha === undefined) {
sha = await this.getLatestFileSHA({owner, repo, branch, path})
}
return this.octokit.repos.createOrUpdateFile({owner, repo, path, content: btoa(content), branch, message, sha});
},
// UTILITIES
parseFullName: function(fullName) {
let [owner, repo] = fullName.split('/');
return {owner, repo};
},
getBranchSHAs: function(params) {
return this.octokit.repos.getBranch({
owner: params.owner,
repo: params.repo,
branch: params.branch,
headers: {
'If-None-Match': '' // cache busting
}
}).then((resp) => {
return {
...params,
baseTreeSHA: resp.data.commit.commit.tree.sha,
parentCommitSHA: resp.data.commit.sha
}
})
},
getLatestFileSHA: async function(params) {
const {owner, repo, branch, path} = params
const {data: {data: {repository: {object: result}}}} = await this.octokit.request({
method: 'POST',
url: '/graphql',
query: `{
repository(owner: "${owner}", name: "${repo}") {
object(expression: "${branch}:${path}") {
... on Blob {
oid
}
}
}
}`
}).catch(function(error) {
console.log(error);
});
const sha = result ? result.oid : undefined
return sha
},
unflattenContents: function(flatContents) {
const files = flatContents.filter(file=>file.type==='blob')
var result = {type: 'folder', name: '', path: '', contents: []}
const findSubFolder = (parentFolder, folderNameToFind) => {
const subfolder = parentFolder.contents.find(el => {
return el.type === 'folder' && el.name === folderNameToFind
})
return subfolder;
}
const addSubFolder = (newFolderName, parentFolder) => {
const newSubFolder = {type: 'folder', name: newFolderName, path: `${parentFolder.path}/${newFolderName}`, contents:[]}
parentFolder.contents.push(newSubFolder)
return newSubFolder;
}
const addFile = (newFileName, parentFolder) => {
const newFile = {type: 'file', name: newFileName, path: `${parentFolder.path}/${newFileName}`}
parentFolder.contents.push(newFile)
}
const isFile = (pathSections, currentIndex) => {
return pathSections.length - 1 == currentIndex
}
files.forEach(file=>{
const pathSections = file.path.split('/')
pathSections.reduce(function(parentFolder, pathSection, pathSectionIndex) {
const subFolder = findSubFolder(parentFolder, pathSection)
if (subFolder) {
return subFolder
} else if (isFile(pathSections, pathSectionIndex)) {
return addFile(pathSection, parentFolder)
} else {
return addSubFolder(pathSection, parentFolder)
}
}, result)
})
return result
}
});

263
src/Voyant-master/src/main/webapp/app/notebook/storage/github/ReposBrowser.js
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Ext.define("Voyant.notebook.github.ReposBrowser", {
extend: "Ext.container.Container",
xtype: "githubreposbrowser",
config: {
repoType: 'owner',
selectedNode: undefined,
repoId: undefined,
path: undefined
},
octokit: undefined,
constructor: function(config) {
config = config || {};
this.octokit = config.octokit;
this.callParent(arguments);
},
initComponent: function() {
Ext.apply(this, {
layout: {
type: 'hbox',
align: 'stretch',
pack: 'start'
},
items: [{
layout: {
type: 'vbox',
align: 'stretch',
pack: 'start'
},
flex: 1,
items: [{
layout: {
type: 'accordion'
},
items: [{
title: 'My Repositories',
frame: true,
items: {
xtype: 'radiogroup',
fieldLabel: 'Show repositories for which I am',
labelAlign: 'top',
layout: 'vbox',
items: [{
boxLabel: 'Owner',
name: 'repoType',
inputValue: 'owner',
checked: true
},{
boxLabel: 'Collaborator',
name: 'repoType',
inputValue: 'collaborator'
},{
boxLabel: 'Organization Member',
name: 'repoType',
inputValue: 'organization_member'
}],
listeners: {
change: function(field, newValues, oldValue) {
this.setRepoType(newValues.repoType);
this.clearTree(true);
this.octokit.getReposForAuthenticatedUser(this.getRepoType(), 0, 100).then((resp) => {
this.addReposToTree(resp.data);
},(error) => {
console.log(error);
})
},
scope: this
}
},
listeners: {
expand: function() {
this.clearTree(true);
this.octokit.getReposForAuthenticatedUser(this.getRepoType(), 0, 100).then((resp) => {
this.addReposToTree(resp.data);
},(error) => {
console.log(error);
})
},
scope: this
}
},{
title: 'Public Repositories',
frame: true,
layout: 'vbox',
items: [{
fieldLabel: 'Limit to user or organization',
labelAlign: 'top',
xtype: 'textfield'
},{
text: 'Search',
xtype: 'button',
handler: function(button) {
let repoOwner = button.prev('textfield').getValue();
if (repoOwner !== '') {
this.clearTree(true);
this.octokit.getReposForUser(repoOwner, 0, 100).then((resp) => {
this.addReposToTree(resp.data.items);
},(error) => {
console.log(error);
})
}
},
scope: this
}],
listeners: {
expand: function() {
this.clearTree();
},
scope: this
}
}]
}
// ,{
// padding: '20 0 0 0',
// items: [{
// fieldLabel: 'Search within repositories',
// labelAlign: 'top',
// xtype: 'textfield'
// },{
// xtype: 'button',
// text: 'Search',
// margin: '0 5 0 0',
// handler: function(button) {
// let query = button.prev('textfield').getValue();
// if (query !== '') {
// this.searchWithinRepositories(query);
// }
// },
// scope: this
// },{
// xtype: 'button',
// text: 'Clear',
// handler: function(button) {
// },
// scope: this
// }]
// }
]
},{
flex: 2,
layout: 'fit',
xtype: 'treepanel',
itemId: 'repoTree',
title: 'Repositories',
scrollable: true,
rootVisible: false,
viewConfig: {
emptyText: 'No results',
listeners: {
afteritemexpand: function(node, index, el) {
if (node.hasChildNodes() === false) {
switch(node.data.type) {
case 'repo':
let tr = el.querySelector('tr');
Ext.fly(tr).addCls('x-grid-tree-loading');
this.octokit.getRepoContents(node.getId()).then(function(resp) {
Ext.fly(tr).removeCls('x-grid-tree-loading');
this.addRepoContentsToNode(node, resp);
}.bind(this))
break;
case 'folder':
break;
}
}
},
itemclick: function(view, node, el) {
this.setSelectedNode(node);
this.fireEvent('nodeSelected', this, node.data.type, node);
},
scope: this
}
},
store: {
root: {
name: 'Root',
children: []
}
}
}],
listeners: {
boxready: function() {
this.down('#repoTree').setLoading(true);
this.octokit.getReposForAuthenticatedUser(this.getRepoType(), 0, 100).then((resp) => {
this.addReposToTree(resp.data);
},(error) => {
console.log(error);
})
}
}
});
this.callParent(arguments);
},
updateSelectedNode: function(node, oldValue) {
if (node !== undefined) {
let repoParent = node;
while (repoParent !== null && repoParent.data.type !== 'repo') {
repoParent = repoParent.parentNode;
}
this.setRepoId(repoParent.getId());
this.setPath(node.getId());
} else {
this.setRepoId(undefined);
this.setPath(undefined);
}
},
clearTree: function(setLoading) {
let repoTree = this.down('#repoTree');
let root = repoTree.getRootNode();
root.removeAll();
repoTree.getView().refresh();
if (setLoading) {
repoTree.setLoading(true);
}
this.setSelectedNode(undefined);
this.fireEvent('nodeDeselected', this);
},
addReposToTree: function(rawRepos) {
let repoTree = this.down('#repoTree');
repoTree.setLoading(false);
let root = repoTree.getRootNode();
let repos = rawRepos.map((repo) => {
return {
id: repo.full_name,
text: repo.full_name,
description: repo.description,
leaf: false,
type: 'repo'
}
});
root.appendChild(repos);
},
addRepoContentsToNode: function(node, octokitResponse) {
function parseContents(content) {
let nodeConfig = {
id: content.path,
text: content.name,
type: content.type,
leaf: content.type === 'file'
};
if (nodeConfig.leaf === false) {
nodeConfig.children = [];
content.contents.forEach((child) => {
nodeConfig.children.push(parseContents(child));
})
}
return nodeConfig;
}
let contents = parseContents(octokitResponse.contents);
node.appendChild(contents.children);
}
})

192
src/Voyant-master/src/main/webapp/app/notebook/storage/voyant/StorageDialogs.js
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Ext.define("Voyant.notebook.StorageDialogs", {
extend: "Ext.Component",
requires: [],
alias: "",
config: {
accessCode: undefined
},
constructor: function(config) {
config = config || {};
this.callParent(arguments);
},
initComponent: function() {
this.callParent(arguments);
},
showSave: function(data, metadata, notebookId='') {
const me = this;
const newNotebook = notebookId === '';
const title = newNotebook ? 'Save New Notebook' : 'Overwrite Existing Notebook';
Ext.create('Ext.window.Window', {
title: title,
items: [{
xtype: 'form',
width: 450,
bodyPadding: 5,
plugins: ['datatip'],
listeners: {
beforeshowtip: function(tip, config, msg) {
return !config.currentTarget.el.hasCls('x-form-invalid'); // don't show tooltip if the field is invalid because otherwise the two tips overlap
}
},
layout: 'anchor',
defaults: {
labelAlign: 'right',
labelWidth: 160,
width: 360,
inputAttrTpl: 'spellcheck="false"',
xtype: 'textfield'
},
items: [{
fieldLabel: 'Notebook ID' + (newNotebook ? ' (optional)' : ''),
name: 'notebookId',
value: notebookId,
allowBlank: true,
readOnly: !newNotebook,
tooltip: 'An ID used to identify this notebook. If left blank, one will be generated for you.',
validator: function(val) {
if (val == '') {
return true;
} else if (val.match(/^[\w-]{4,16}$/) === null) {
return 'The ID must be between 4 and 16 alphanumeric characters.'
} else {
return true;
}
}
},{
fieldLabel: 'Access Code',
name: 'accessCode',
allowBlank: false,
value: newNotebook ? this.generateAccessCode() : this.getAccessCode(),
tooltip: 'The Access Code is required to overwrite this notebook.',
validator: function(val) {
if (val.match(/^[\w-]{4,16}$/) === null) {
return 'The access code must be between 4 and 16 alphanumeric characters.'
} else {
return true;
}
}
},{
fieldLabel: 'Email (optional)',
name: 'email',
allowBlank: true,
vtype: 'email',
hidden: !newNotebook,
tooltip: 'An email will be sent to this address with the Notebook URL and Access Code.'
}]
}],
buttons: [{
text: 'Cancel',
ui: 'default-toolbar',
handler: function() {
this.up('window').close();
me.fireEvent('saveCancelled', me);
}
}, " ", {
text: 'Save',
handler: function(button) {
const win = button.up('window');
const form = win.down('form').getForm();
if (form.isValid()) {
const values = form.getValues();
values.data = data;
values.metadata = metadata;
if (newNotebook && values.notebookId !== '') {
me.doesNotebookIdExist(values.notebookId).then(function(exists) {
if (exists) {
form.findField('notebookId').markInvalid('That Notebook ID already exists.');
} else {
me.doSave(values);
win.close();
}
});
} else {
button.setDisabled(true);
me.doSave(values).then(function(didSave) {
button.setDisabled(false);
if (didSave) {
win.close();
} else {
form.findField('accessCode').markInvalid('Invalid access code.');
}
});
}
}
}
}],
listeners: {
close: function() {
me.fireEvent('close', me); // need an additional close event in case the user uses the close tool / esc button
}
}
}).show();
},
doesNotebookIdExist: function(id) {
const dfd = new Ext.Deferred();
Spyral.Load.trombone({
tool: 'notebook.GitNotebookManager',
action: 'exists',
id: id,
noCache: 1
}).then(function(json) {
var exists = json.notebook.data === 'true';
dfd.resolve(exists);
}).catch(function(err) {
console.log(err);
});
return dfd.promise;
},
doSave: function({notebookId, accessCode, email, data, metadata}) {
const me = this;
metadata.id = notebookId;
return Spyral.Load.trombone({
tool: 'notebook.GitNotebookManager',
action: 'save',
id: notebookId,
accessCode: accessCode,
email: email,
data: data,
metadata: JSON.stringify(metadata)
}).then(function(json) {
if (json.notebook.data !== 'true') {
return false;
} else {
me.setAccessCode(accessCode);
const notebookId = json.notebook.id;
me.fireEvent('fileSaved', me, notebookId);
return true;
}
}).catch(function(err) {
me.fireEvent('fileSaved', me, null);
return false;
});
},
generateAccessCode: function() {
const alphabet = ['a','b','c','d','e','f','g','h','i','j','k','l','m','n','o','p','q','r','s','t','u','v','w','x','y','z'];
let code = '';
while (code.length < 6) {
if (Math.random() < .3) {
code += Math.floor(Math.random()*9);
} else {
let letter = alphabet[Math.floor(Math.random()*alphabet.length)];
if (Math.random() < .5) {
letter = letter.toUpperCase();
}
code += letter;
}
}
return code;
},
reset: function() {
this.setAccessCode(undefined);
}
})

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src/Voyant-master/src/main/webapp/app/notebook/util/Embed.js
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Ext.define("Voyant.notebook.util.Embed", {
transferable: ['embed'],
embed: function() { // this is for instances
embed.apply(this, arguments);
},
constructor: function(config) {
var me = this;
},
statics: {
i18n: {},
api: {
embeddedParameters: undefined,
embeddedConfig: undefined
},
embed: function(cmp, config) {
if (this.then) {
this.then(function(embedded) {
embed.call(embedded, cmp, config)
})
} else if (Ext.isArray(cmp)) {
Voyant.notebook.util.Show.SINGLE_LINE_MODE=true;
show("<table><tr>");
cmp.forEach(function(embeddable) {
show("<td>");
if (Ext.isArray(embeddable)) {
if (embeddable[0].embeddable) {
embeddable[0].embed.apply(embeddable[0], embeddable.slice(1))
} else {
embed.apply(this, embeddable)
}
} else {
embed.apply(this, embeddable);
}
show("</td>")
})
// for (var i=0; i<arguments.length; i++) {
// var unit = arguments[i];
// show("<td>")
// unit[0].embed.call(unit[0], unit[1], unit[2]);
// show("</td>")
// }
show("</tr></table>")
Voyant.notebook.util.Show.SINGLE_LINE_MODE=false;
return
} else {
// use the default (first) embeddable panel if no panel is specified
if (this.embeddable && (!cmp || Ext.isObject(cmp))) {
// if the first argument is an object, use it as config instead
if (Ext.isObject(cmp)) {config = cmp;}
cmp = this.embeddable[0];
}
if (Ext.isString(cmp)) {
cmp = Ext.ClassManager.getByAlias('widget.'+cmp.toLowerCase()) || Ext.ClassManager.get(cmp);
}
var isEmbedded = false;
if (Ext.isFunction(cmp)) {
var name = cmp.getName();
if (this.embeddable && Ext.Array.each(this.embeddable, function(item) {
if (item==name) {
config = config || {};
var embeddedParams = {};
for (key in Ext.ClassManager.get(Ext.getClassName(cmp)).api) {
if (key in config) {
embeddedParams[key] = config[key]
}
}
if (!embeddedParams.corpus) {
if (Ext.getClassName(this)=='Voyant.data.model.Corpus') {
embeddedParams.corpus = this.getId();
} else if (this.getCorpus) {
var corpus = this.getCorpus();
if (corpus) {
embeddedParams.corpus = this.getCorpus().getId();
}
}
}
Ext.applyIf(config, {
style: 'width: '+(config.width || '90%') + (Ext.isNumber(config.width) ? 'px' : '')+
'; height: '+(config.height || '400px') + (Ext.isNumber(config.height) ? 'px' : '')
});
delete config.width;
delete config.height;
var corpus = embeddedParams.corpus;
delete embeddedParams.corpus;
Ext.applyIf(embeddedParams, Voyant.application.getModifiedApiParams());
var embeddedConfigParamEncodded = Ext.encode(embeddedParams);
var embeddedConfigParam = encodeURIComponent(embeddedConfigParamEncodded);
var iframeId = Ext.id();
var url = Voyant.application.getBaseUrlFull()+"tool/"+name.substring(name.lastIndexOf(".")+1)+'/?';
if (true || embeddedConfigParam.length>1800) {
show('<iframe style="'+config.style+'" id="'+iframeId+'" name="'+iframeId+'"></iframe>');
var dfd = Voyant.application.getDeferred(this);
Ext.Ajax.request({
url: Voyant.application.getTromboneUrl(),
params: {
tool: 'resource.StoredResource',
storeResource: embeddedConfigParam
}
}).then(function(response) {
var json = Ext.util.JSON.decode(response.responseText);
var params = {
minimal: true,
embeddedApiId: json.storedResource.id
}
if (corpus) {
params.corpus = corpus;
}
Ext.applyIf(params, Voyant.application.getModifiedApiParams());
document.getElementById(iframeId).setAttribute("src",url+Ext.Object.toQueryString(params));
dfd.resolve();
}).otherwise(function(response) {
showError(response);
dfd.reject();
})
} else {
show('<iframe src="'+url+embeddedConfigParam+'" style="'+config.style+'" id="'+iframeId+'" name="'+iframeId+'"></iframe>');
}
isEmbedded = true;
return false;
}
}, this)===true) {
Voyant.notebook.util.Embed.showWidgetNotRecognized.call(this);
}
if (!isEmbedded) {
var embedded = Ext.create(cmp, config);
embedded.embed(config);
isEmbedded = true;
}
}
if (!isEmbedded) {
Voyant.notebook.util.Embed.showWidgetNotRecognized.call(this);
}
}
},
showWidgetNotRecognized: function() {
var msg = Voyant.notebook.util.Embed.i18n.widgetNotRecognized;
if (this.embeddable) {
msg += Voyant.notebook.util.Embed.i18n.tryWidget+'<ul>'+this.embeddable.map(function(cmp) {
var widget = cmp.substring(cmp.lastIndexOf(".")+1).toLowerCase()
return "\"<a href='../../docs/#!/guide/"+widget+"' target='voyantdocs'>"+widget+"</a>\""
}).join(", ")+"</ul>"
}
showError(msg)
}
}
})
embed = Voyant.notebook.util.Embed.embed

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src/Voyant-master/src/main/webapp/app/notebook/util/Show.js
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Ext.define("Voyant.notebook.util.Show", {
transferable: ['show'],
/**
* Shows a one-line summary of this object. For example, for a corpus:
*
* new Corpus("Hello World!").show(true);
*
* @param {boolean} [withID] Includes the corpus ID in parentheses at the end, if true.
*/
show: function(len) { // this is for instances
if (this.then) {
return Voyant.application.getDeferredNestedPromise(this, arguments);
} else {
show.call(this, this.getString ? this.getString(len) : this.toString(), !this.getString && Ext.isNumber(len) ? len : undefined);
}
},
statics: {
show: function(contents, len) {
if (this.then) {
var arg = contents;
this.then(function(val) {
show.call(val, val, arg);
})
} else {
if (contents === undefined) {
return;
}
if (Ext.isArray(contents)) {
var allContents = "";
contents.forEach(function(content) {
allContents += content.getString ? content.getString() : content.toString();
});
contents = allContents;
} else if (Ext.isString(this) || this instanceof String) {
if (Ext.isNumber(contents)) {len = contents;}
contents = this;
}
if (contents.then) { // check if we currently have a promise
return contents.then(function(text) {show(text, len)})
}
if (contents.toHtml) {contents=contents.toHtml()}
else if (contents.getString) {contents=contents.getString()}
else if (contents.toString) {contents=contents.toString()}
// contents = contents.getString ? contents.getString() : contents.toString();
if (contents.then) { // check again to see if we have a promise (like from toString())
contents.then(function(text) {show(text, len)})
} else {
if (len && Ext.isNumber(len)) {contents = contents.substring(0,len)}
if (Voyant.notebook.util.Show.SINGLE_LINE_MODE==false) {contents="<div class='"+Voyant.notebook.util.Show.MODE+"'>"+contents+"</div>";}
Voyant.notebook.util.Show.TARGET.insertHtml('beforeEnd',contents);
}
}
},
showError: function(error, more) {
var mode = Voyant.notebook.util.Show.MODE;
Voyant.notebook.util.Show.MODE='error';
if (this instanceof Voyant.util.ResponseError) {
error = this;
}
if (error instanceof Voyant.util.ResponseError) {
if (console) {console.error(error.getResponse())}
more = error.getResponse().responseText
error = error.getMsg();
}
else {
if (error !== undefined && error.stack && !more) {more=error.stack}
if (more && Ext.isString(more)===false) {more=more.toString()}
}
if (console) {console.error(error)}
if (more) {
if (console) {console.error(more);}
error="<h3>"+error.toString()+"</h3><pre>"+Ext.String.htmlEncode(more)+'</pre>';
}
show(error);
Voyant.notebook.util.Show.MODE = mode;
},
TARGET : null,
MODE: 'info',
SINGLE_LINE_MODE : false
}
});
String.prototype.show = Voyant.notebook.util.Show.show;
var show = Voyant.notebook.util.Show.show;
var showError = Voyant.notebook.util.Show.showError;

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src/Voyant-master/src/main/webapp/app/panel/Bubblelines.js
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// assuming Bubblelines library is loaded by containing page (via voyant.jsp)
Ext.define('Voyant.panel.Bubblelines', {
extend: 'Ext.panel.Panel',
mixins: ['Voyant.panel.Panel'],
alias: 'widget.bubblelines',
statics: {
i18n: {
},
api: {
/**
* @property bins How many "bins" to separate a document into.
* @type Integer
* @private
*/
bins: 50,
/**
* @property query A string to search for in a document.
* @type String
* @private
*/
query: null,
/**
* @property stopList The stop list to use to filter results.
* Choose from a pre-defined list, or enter a comma separated list of words, or enter an URL to a list of stop words in plain text (one per line).
* @type String
* @private
*/
stopList: 'auto',
/**
* @property docId The document ID to restrict results to.
* @type String
* @private
*/
docId: undefined,
/**
* @property docIndex The document index to restrict results to.
* @type Integer
* @private
*/
docIndex: undefined,
/**
* @property maxDocs The maximum number of documents to show.
* @type Integer
* @private
*/
maxDocs: 50
},
glyph: 'xf06e@FontAwesome'
},
config: {
bubblelines: undefined,
termStore: undefined,
docTermStore: undefined,
selectedDocs: undefined,
options: [{xtype: 'stoplistoption'},{xtype: 'categoriesoption'},{xtype: 'colorpaletteoption'}]
},
termTpl: new Ext.XTemplate(
'<tpl for=".">',
'<div class="term" style="color: rgb({color});float: left;padding: 3px;margin: 2px;">{term}</div>',
'</tpl>'
),
constructor: function() {
this.callParent(arguments);
this.mixins['Voyant.panel.Panel'].constructor.apply(this, arguments);
this.on('loadedCorpus', function(src, corpus) {
this.setDocTermStore(corpus.getDocumentTerms({
proxy: {
extraParams: {
withDistributions: 'raw',
withPositions: true
}
},
listeners: {
load: function(store, records, successful, options) {
records.forEach(function(record) {
var termData = this.processTerms(record);
var docId = record.get('docId');
var term = record.get('term');
var termObj = {};
termObj[term] = termData;
this.getBubblelines().addTermsToDoc(termObj, docId);
}, this);
this.getBubblelines().doBubblelinesLayout();
},
scope: this
}
}));
if (this.isVisible() && this.getBubblelines()) {
this.initLoad();
}
}, this);
this.on('activate', function() { // load after tab activate (if we're in a tab panel)
if (this.getCorpus()) {
Ext.Function.defer(this.initLoad, 100, this);
}
}, this);
this.on('query', function(src, query) {
if (query !== undefined && query != '') {
this.getDocTermsFromQuery(query);
}
}, this);
this.on('documentsSelected', function(src, docIds) {
this.setApiParam('docId', docIds);
this.getBubblelines().cache.each(function(d) {
d.hidden = docIds.indexOf(d.id) === -1;
});
this.getBubblelines().drawGraph();
}, this);
this.on('termsClicked', function(src, terms) {
if (src !== this) {
var queryTerms = [];
terms.forEach(function(term) {
if (Ext.isString(term)) {queryTerms.push(term);}
else if (term.term) {queryTerms.push(term.term);}
else if (term.getTerm) {queryTerms.push(term.getTerm());}
});
this.getDocTermsFromQuery(queryTerms);
}
}, this);
this.on('documentTermsClicked', function(src, terms) {
var queryTerms = [];
terms.forEach(function(term) {
if (term.getTerm()) {queryTerms.push(term.getTerm());}
});
this.getDocTermsFromQuery(queryTerms);
}, this);
this.down('#granularity').setValue(parseInt(this.getApiParam('bins')));
},
initComponent: function() {
this.setTermStore(Ext.create('Ext.data.ArrayStore', {
fields: ['term', 'color'],
listeners: {
load: function(store, records, successful, options) {
var termsView = this.down('#termsView');
for (var i = 0; i < records.length; i++) {
var r = records[i];
termsView.select(r, true);
}
},
scope: this
}
}));
Ext.apply(this, {
title: this.localize('title'),
dockedItems: [{
dock: 'bottom',
xtype: 'toolbar',
overflowHandler: 'scroller',
items: [{
xtype: 'querysearchfield'
},{
text: this.localize('clearTerms'),
glyph: 'xf014@FontAwesome',
handler: function() {
this.down('#termsView').getSelectionModel().deselectAll(true);
this.getTermStore().removeAll();
this.setApiParams({query: null});
this.getBubblelines().removeAllTerms();
this.getBubblelines().drawGraph();
},
scope: this
},{
xtype: 'documentselectorbutton'
},{
xtype: 'slider',
itemId: 'granularity',
fieldLabel: this.localize('granularity'),
labelAlign: 'right',
labelWidth: 70,
width: 150,
increment: 10,
minValue: 10,
maxValue: 300,
listeners: {
changecomplete: function(slider, newvalue) {
this.setApiParams({bins: newvalue});
this.getBubblelines().bubbleSpacing = newvalue;
this.reloadTermsData();
},
scope: this
}
},{
xtype: 'checkbox',
boxLabel: this.localize('separateLines'),
boxLabelAlign: 'before',
checked: false,
handler: function(checkbox, checked) {
this.getBubblelines().SEPARATE_LINES_FOR_TERMS = checked;
this.getBubblelines().lastClickedBubbles = {};
this.getBubblelines().setCanvasHeight();
this.getBubblelines().drawGraph();
},
scope: this
}]
}],
border: false,
layout: 'fit',
items: {
layout: {
type: 'vbox',
align: 'stretch'
},
defaults: {border: false},
items: [{
height: 30,
itemId: 'termsView',
xtype: 'dataview',
store: this.getTermStore(),
tpl: this.termTpl,
itemSelector: 'div.term',
overItemCls: 'over',
selectedItemCls: 'selected',
selectionModel: {
mode: 'SIMPLE'
},
// cls: 'selected', // default selected
focusCls: '',
listeners: {
beforeitemclick: function(dv, record, item, index, event, opts) {
event.preventDefault();
event.stopPropagation();
dv.fireEvent('itemcontextmenu', dv, record, item, index, event, opts);
return false;
},
beforecontainerclick: function() {
// cancel deselect all
event.preventDefault();
event.stopPropagation();
return false;
},
selectionchange: function(selModel, selections) {
var dv = this.down('#termsView');
var terms = [];
dv.getStore().each(function(r) {
if (selections.indexOf(r) !== -1) {
terms.push(r.get('term'));
Ext.fly(dv.getNodeByRecord(r)).removeCls('unselected').addCls('selected');
} else {
Ext.fly(dv.getNodeByRecord(r)).removeCls('selected').addCls('unselected');
}
});
for (var index in this.getBubblelines().lastClickedBubbles) {
var lcTerms = this.getBubblelines().lastClickedBubbles[index];
for (var term in lcTerms) {
if (terms.indexOf(term) == -1) {
delete this.getBubblelines().lastClickedBubbles[index][term];
}
}
}
this.getBubblelines().termsFilter = terms;
this.getBubblelines().setCanvasHeight();
this.getBubblelines().drawGraph();
},
itemcontextmenu: function(dv, record, el, index, event) {
event.preventDefault();
event.stopPropagation();
var isSelected = dv.isSelected(el);
var menu = new Ext.menu.Menu({
floating: true,
items: [{
text: isSelected ? this.localize('hideTerm') : this.localize('showTerm'),
handler: function() {
if (isSelected) {
dv.deselect(index);
} else {
dv.select(index, true);
}
},
scope: this
},{
text: this.localize('removeTerm'),
handler: function() {
dv.deselect(index);
var term = this.getTermStore().getAt(index).get('term');
this.getTermStore().removeAt(index);
dv.refresh();
this.getBubblelines().removeTerm(term);
this.getBubblelines().setCanvasHeight();
this.getBubblelines().drawGraph();
},
scope: this
}]
});
menu.showAt(event.getXY());
},
scope: this
}
},{
flex: 1,
xtype: 'container',
autoEl: 'div',
itemId: 'canvasParent',
layout: 'fit',
overflowY: 'auto',
overflowX: 'hidden'
}],
listeners: {
render: function(component) {
var canvasParent = this.down('#canvasParent');
this.setBubblelines(new Bubblelines({
container: canvasParent,
clickHandler: this.bubbleClickHandler.bind(this)
}));
this.getBubblelines().bubbleSpacing = parseInt(this.getApiParam('bins'));
},
afterlayout: function(container) {
if (this.getBubblelines().initialized === false) {
this.getBubblelines().initializeCanvas();
}
},
resize: function(cnt, width, height) {
this.getBubblelines().doBubblelinesLayout();
},
scope: this
}
}
});
this.callParent(arguments);
},
initLoad: function() {
// get doc info
var docIds = [];
this.getCorpus().getDocuments().each(function(doc, index, total) {
var inLimit = index < this.getApiParam('maxDocs');
this.getBubblelines().addDocToCache({
id: doc.getId(),
index: doc.getIndex(),
title: doc.getShortTitle(),
totalTokens: doc.get('tokensCount-lexical'),
terms: {},
hidden: !inLimit
});
if (inLimit) {
docIds.push(doc.getId());
}
}, this);
this.setApiParam('docId', docIds);
// get top terms in corpus
this.getCorpus().getCorpusTerms({autoload: false}).load({
callback: function(records, operation, success) {
var query = [];
records.forEach(function(record, index) {
query.push(record.get('term'));
}, this);
this.getDocTermsFromQuery(query);
},
scope: this,
params: {
limit: this.getApiParam('query') ? undefined : 5,
stopList: this.getApiParams('stopList'),
query: this.getApiParam('query')
}
});
},
/**
* Get the results for the query(s) for each of the corpus documents.
* @param query {String|Array}
*/
getDocTermsFromQuery: function(query) {
if (query) {this.setApiParam('query', query);} // make sure it's set for subsequent calls
if (this.getCorpus() && this.isVisible()) {
this.getDocTermStore().load({params: this.getApiParams()});
}
},
reloadTermsData: function() {
var terms = [];
for (var term in this.getBubblelines().currentTerms) {
terms.push(term);
}
this.getDocTermsFromQuery(terms);
},
filterDocuments: function() {
var docIds = this.getApiParam('docId');
if (docIds == '') {
docIds = [];
this.getCorpus().getDocuments().each(function(item, index) {
docIds.push(item.getId());
});
this.setApiParams({docId: docIds});
}
if (typeof docIds == 'string') docIds = [docIds];
if (docIds == null) {
this.setSelectedDocs(this.getCorpus().getDocuments().clone());
var count = this.getSelectedDocs().getCount();
if (count > 10) {
for (var i = 10; i < count; i++) {
this.getSelectedDocs().removeAt(10);
}
}
docIds = [];
this.getSelectedDocs().eachKey(function(docId, doc) {
docIds.push(docId);
}, this);
this.setApiParams({docId: docIds});
} else {
this.setSelectedDocs(this.getCorpus().getDocuments().filterBy(function(doc, docId) {
return docIds.indexOf(docId) != -1;
}, this));
}
},
processTerms: function(termRecord) {
var termObj;
var term = termRecord.get('term');
var rawFreq = termRecord.get('rawFreq');
var positions = termRecord.get('positions');
if (rawFreq > 0) {
var color = this.getApplication().getColorForTerm(term);
if (this.getTermStore().find('term', term) === -1) {
this.getTermStore().loadData([[term, color]], true);
var index = this.getTermStore().find('term', term);
this.down('#termsView').select(index, true); // manually select since the store's load listener isn't triggered
}
var distributions = termRecord.get('distributions');
termObj = {positions: positions, distributions: distributions, rawFreq: rawFreq, color: color};
} else {
termObj = false;
}
return termObj;
},
bubbleClickHandler: function(data) {
this.getApplication().dispatchEvent('termsClicked', this, data);
}
});

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src/Voyant-master/src/main/webapp/app/panel/BubblelinesSet.js
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Ext.define('Voyant.panel.BubblelinesSet', {
extend: 'Ext.panel.Panel',
requires: ['Voyant.panel.Bubblelines','Voyant.panel.Contexts', 'Voyant.panel.Reader'],
mixins: ['Voyant.panel.Panel'],
alias: 'widget.bubblelinesset',
statics: {
i18n: {
},
glyph: 'xf17a@FontAwesome'
},
constructor: function(config) {
this.callParent(arguments);
this.mixins['Voyant.panel.Panel'].constructor.apply(this, arguments);
},
layout: 'vbox',
header: false,
items: [{
width: '100%',
height: '100%',
xtype: 'bubblelines',
flex: 5
},{
width: '100%',
height: '100%',
split: {width: 5},
layout: 'hbox',
flex: 4,
defaults: {
width: '100%',
height: '100%',
flex: 1,
frame: true,
border: true
},
items: [{
xtype: 'contexts'
},{
xtype: 'reader'
}]
}]
})

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src/Voyant-master/src/main/webapp/app/panel/Bubbles.js
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// assuming Bubblelines library is loaded by containing page (via voyant.jsp)
Ext.define('Voyant.panel.Bubbles', {
extend: 'Ext.panel.Panel',
mixins: ['Voyant.panel.Panel'],
alias: 'widget.bubbles',
statics: {
i18n: {
},
api: {
/**
* @property stopList The stop list to use to filter results.
* Choose from a pre-defined list, or enter a comma separated list of words, or enter an URL to a list of stop words in plain text (one per line).
* @type String
* @private
*/
stopList: 'auto',
docIndex: 0,
limit: 100,
audio: false,
speed: 30
},
glyph: 'xf06e@FontAwesome'
},
config: {
options: {xtype: 'stoplistoption'},
audio: false
},
constructor: function() {
this.mixins['Voyant.util.Localization'].constructor.apply(this, arguments);
Ext.apply(this, {
title: this.localize('title'),
html: '<canvas style="width: 100%; height: 100%"></canvas>',
dockedItems: [{
dock: 'bottom',
xtype: 'toolbar',
overflowHandler: 'scroller',
items: [{
xtype: 'documentselectorbutton',
singleSelect: true
},{
xtype: 'slider',
fieldLabel: this.localize('speed'),
labelAlign: 'right',
labelWidth: 40,
width: 100,
increment: 1,
minValue: 1,
maxValue: 60,
value: 30,
listeners: {
render: function(cmp) {
cmp.setValue(parseInt(this.getApiParam("speed")));
if (this.bubbles) {this.bubbles.frameRate(cmp.getValue())}
this.setAudio(cmp.getValue());
Ext.tip.QuickTipManager.register({
target: cmp.getEl(),
text: this.localize('speedTip')
});
},
beforedestroy: function(cmp) {
Ext.tip.QuickTipManager.unregister(cmp.getEl());
},
changecomplete: function(cmp, val) {
this.setApiParam('speed', val);
if (this.bubbles) {this.bubbles.frameRate(val)}
},
scope: this
}
},{
xtype: 'checkbox',
boxLabel: this.localize('sound'),
listeners: {
render: function(cmp) {
cmp.setValue(this.getApiParam("audio")===true || this.getApiParam("audio")=="true");
this.setAudio(cmp.getValue());
Ext.tip.QuickTipManager.register({
target: cmp.getEl(),
text: this.localize('soundTip')
});
},
beforedestroy: function(cmp) {
Ext.tip.QuickTipManager.unregister(cmp.getEl());
},
change: function(cmp, val) {
this.setApiParam('audio', val);
this.setAudio(val);
},
scope: this
}
},{xtype: 'tbfill'}, {
xtype: 'tbtext',
html: this.localize('adaptation') //https://www.m-i-b.com.ar/letters/en/
}]
}]
});
this.callParent(arguments);
this.mixins['Voyant.panel.Panel'].constructor.apply(this, arguments);
this.on('loadedCorpus', function(src, corpus) {
var canvas = this.getTargetEl().dom.querySelector("canvas");
var me = this;
Ext.Ajax.request({
url: this.getBaseUrl()+'resources/voyant/current/bubbles/bubbles.pjs'
}).then(function(data) {
var canvas = me.getTargetEl().dom.querySelector("canvas");
me.bubbles = new Processing(canvas, data.responseText);
me.bubbles.size(me.getTargetEl().getWidth(),me.getTargetEl().getHeight());
me.bubbles.frameRate(me.getApiParam('speed'));
me.bubbles.bindJavascript(me);
me.bubbles.noLoop();
me.loadDocument();
})
}, this);
this.on("resize", function() {
if (this.bubbles) {
this.bubbles.size(this.body.getWidth(),this.body.getHeight());
}
});
this.on("documentselected", function(src, doc) {
this.setApiParam('docIndex', this.getCorpus().getDocument(doc).getIndex());
this.loadDocument();
})
},
setAudio: function(val) {
if (this.gainNode) {this.gainNode.gain.value=val ? 1 : 0;}
this.callParent(arguments)
},
handleCurrentTerm: function(term) {
if (this.oscillator) {this.oscillator.frequency.value = this.terms[term] ? parseInt((this.terms[term]-this.minFreq) * 2000 / (this.maxFreq-this.minFreq)) : 0;}
},
handleDocFinished: function() {
if (this.gainNode) {this.gainNode.gain.value = 0;}
var index = parseInt(this.getApiParam('docIndex'));
if (index+1<this.getCorpus().getDocumentsCount()) {
this.setApiParam('docIndex', index+1);
this.loadDocument();
}
},
loadDocument: function() {
var me = this, doc = this.getCorpus().getDocument(parseInt(this.getApiParam('docIndex')));
// if we're not in a tab panel, set the document title as part of the header
if (!this.up("tabpanel")) {
this.setTitle(this.localize('title') + " <span class='subtitle'>"+doc.getFullLabel()+"</span>");
}
doc.loadDocumentTerms(Ext.apply(this.getApiParams(["stopList"]), {
limit: 100
})).then(function(documentTerms) {
me.terms = {};
documentTerms.each(function(documentTerm) {
me.terms[documentTerm.getTerm()] = documentTerm.getRawFreq();
})
var values = Object.keys(me.terms).map(function(k){return me.terms[k]});
me.minFreq = Ext.Array.min(values);
me.maxFreq = Ext.Array.max(values);
me.getCorpus().loadTokens({whitelist: Object.keys(me.terms), noOthers: true, limit: 0, docIndex: me.getApiParam('docIndex')}).then(function(tokens) {
var words = [];
tokens.each(function(token) {
words.push(token.getTerm().toLowerCase());
})
me.bubbles.setLines([doc.getTitle(),words.join(" ")]);
me.bubbles.loop();
me.oscillator.frequency.value = 150;
me.gainNode.gain.value = me.getAudio() ? 1 : 0;
})
})
},
initComponent: function() {
// make sure to load script
Ext.Loader.loadScript(this.getBaseUrl()+"resources/processingjs/processing.min.js");
var audioCtx = new (window.AudioContext || window.webkitAudioContext)();
this.oscillator = audioCtx.createOscillator();
this.gainNode = audioCtx.createGain();
this.oscillator.connect(this.gainNode);
this.gainNode.connect(audioCtx.destination);
this.oscillator.frequency.value = 0;
this.oscillator.start();
this.gainNode.gain.value = 0;
this.callParent(arguments);
}
});

550
src/Voyant-master/src/main/webapp/app/panel/Catalogue.js
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Ext.define('Voyant.panel.Catalogue', {
extend: 'Ext.panel.Panel',
requires: ['Voyant.widget.Facet'],
mixins: ['Voyant.panel.Panel','Voyant.util.Downloadable'],
alias: 'widget.catalogue',
statics: {
i18n: {
},
api: {
config: undefined,
stopList: 'auto',
facet: ['facet.title','facet.author','facet.language'],
title: undefined,
splash: undefined,
reader: "reader"
},
glyph: 'xf1ea@FontAwesome'
},
config: {
facets: {},
matchingDocIds: [],
customResultsHtml: undefined
},
constructor: function(config) {
config = config || {};
this.mixins['Voyant.util.Api'].constructor.apply(this, arguments); // we need api
Ext.apply(this, {
title: this.localize('title'),
layout: 'hbox',
items: [
{
layout: 'vbox',
height: '100%',
align: 'stretch',
itemId: 'facets',
defaults: {
width: 250,
flex: 1,
xtype: 'facet',
margin: 5,
border: true,
frame: true,
includeTools: {
close: {
type: 'close',
tooltip: this.localize('closeFacetTip'),
callback: function(facetCmp) {
delete this.facets[facetCmp.facet]; // remove from facets map
facetCmp.destroy(); // remove this facet
this.updateResults();
},
scope: this
},
add: {
type: 'plus',
tooltip: this.localize('plusFacetTip'),
callback: function() {
this.addFacet();
},
scope: this
}
}
},
items: []
},
{
xtype: 'panel',
html: config.customResultsHtml || '',
flex: 1,
itemId: 'results',
height: '100%',
align: 'stretch',
scrollable: true,
margin: 5,
getCorpus: function() { // for query search field
return this.findParentByType('panel').getCorpus();
},
listeners: {
query: function(src, query) {
this.findParentByType('panel').updateResults(Ext.isString(query) ? [query] : query)
}
},
dockedItems: [{
dock: 'bottom',
xtype: 'toolbar',
overflowHandler: 'scroller',
items: [{
itemId: 'sendToVoyant',
text: this.localize('sendToVoyantButton'),
disabled: true,
handler: function() {
this.mask(this.localize("exportInProgress"));
var catalogue = this;
Ext.Ajax.request({
url: this.getApplication().getTromboneUrl(),
params: {
corpus: this.getCorpus().getId(),
tool: 'corpus.CorpusManager',
keepDocuments: true,
docId: this.getMatchingDocIds()
},
success: function(response, opts) {
catalogue.unmask();
var json = Ext.JSON.decode(response.responseText);
var url = catalogue.getBaseUrl()+"?corpus="+json.corpus.id;
catalogue.openUrl(url);
},
failure: function(response, opts) {
catalogue.unmask();
me.showResponseError("Unable to export corpus: "+catalogue.getCorpus().getId(), response);
}
})
},
scope: this
},{
itemId: 'export',
text: this.localize('downloadButton'),
disabled: true,
handler: function() {
this.mask(this.localize("exportInProgress"));
var catalogue = this;
Ext.Ajax.request({
url: this.getApplication().getTromboneUrl(),
params: {
corpus: this.getCorpus().getId(),
tool: 'corpus.CorpusManager',
keepDocuments: true,
docId: this.getMatchingDocIds()
},
success: function(response, opts) {
catalogue.unmask();
var json = Ext.JSON.decode(response.responseText);
catalogue.downloadFromCorpusId(json.corpus.id);
},
failure: function(response, opts) {
catalogue.unmask();
me.showResponseError("Unable to export corpus: "+catalogue.getCorpus().getId(), response);
}
})
},
scope: this
},{
xtype: 'querysearchfield',
width: 200,
flex: 1
},{
itemId: 'status',
xtype: 'tbtext'
}]
}]
}, {
xtype: this.getApiParam("reader"),
flex: 1,
height: '100%',
align: 'stretch',
header: false
}]
});
this.callParent(arguments);
this.mixins['Voyant.panel.Panel'].constructor.apply(this, arguments);
// create a listener for corpus loading (defined here, in case we need to load it next)
this.on('loadedCorpus', function(src, corpus) {
this.queryById('status').update(new Ext.XTemplate(this.localize('noMatches')).apply([corpus.getDocumentsCount()]))
if (!this.getCustomResultsHtml()) {
if (this.getApiParam("splash")) {
this.setCustomResultsHtml(this.getApiParam("splash"));
this.updateResults();
return;
}
this.setCustomResultsHtml(new Ext.XTemplate(this.localize('noMatches')).apply([corpus.getDocumentsCount()]));
this.updateResults();
Ext.Ajax.request({
url: this.getTromboneUrl(),
params: {
tool: 'resource.StoredResource',
verifyResourceId: 'customhtml-'+corpus.getAliasOrId()
},
success: function(response, req) {
var json = Ext.util.JSON.decode(response.responseText);
if (json && json.storedResource && json.storedResource.id) {
Ext.Ajax.request({
url: this.getTromboneUrl(),
params: {
tool: 'resource.StoredResource',
retrieveResourceId: 'customhtml-'+corpus.getAliasOrId()
},
success: function(response, req) {
var json = Ext.util.JSON.decode(response.responseText);
if (json && json.storedResource && json.storedResource.resource) {
this.setCustomResultsHtml(json.storedResource.resource);
this.updateResults()
}
},
scope: this
})
}
},
scope: this
})
}
});
this.on('afterrender', function(panel) {
var facetsCmp = this.queryById('facets');
this.addFacet({
facet: 'lexical',
includeTools: {add: {
type: 'plus',
tooltip: this.localize('plusFacetTip'),
callback: function() {
this.addFacet();
},
scope: this
}},
store: new Voyant.data.store.CorpusTerms({
parentPanel: this,
proxy: {
extraParams: {
stopList: this.getApiParam("stopList")
}
}
})
}, facetsCmp)
var facets = this.getApiParam('facet');
if (Ext.isString(facets)) {facets = facets.split(",")}
facets.forEach(function(facet) {
this.addFacet({facet: facet}, facetsCmp)
/*
facetCmp.getSelectionModel().on('selectionchange', function(model, selected) {
var labels = [];
selected.forEach(function(model) {
labels.push({facet: model.getFacet(), label: model.getLabel()})
})
panel.getFacets()[facet] = labels;
panel.updateResults();
})
facetCmp.on('query', function(model, selected) {
panel.getFacets()[facetCmp.facet] = [];
panel.updateResults();
})*/
}, this);
/*
facetCmp.getSelectionModel().on('selectionchange', function(model, selected) {
var labels = [];
selected.forEach(function(model) {
labels.push({facet: 'lexical', label: model.getTerm()})
})
panel.getFacets()['lexical'] = labels;
panel.updateResults();
})*/
var title = this.getApiParam("title");
if (title) {this.setTitle(title)}
});
},
addFacet: function(config, facetsCmp) {
if (!config) {
// select first, then add
return this.selectFacet(function(facet) {
this.addFacet({facet: facet})
})
}
facetsCmp = facetsCmp || this.queryById('facets');
var facet = config.facet,
itemTpl = '<span style="font-size: smaller;">(<span class="info-tip" data-qtip="'+this.localize('matchingDocuments')+'">{inDocumentsCount}</span>)</span> {term}'+'<span style="font-size: smaller;"> (<span class="info-tip" data-qtip="'+this.localize('rawFreqs')+'">{rawFreq}</span>)</span>'
var title = this.localize(facet+"Title");
if (title=="["+facet+"Title]") {
title = facet.replace(/^facet\./,"").replace(/^extra./,"");
}
var matchingDocumentsLabel = this.localize('matchingDocuments');
Ext.applyIf(config, {
title: title,
collapsible: true,
facet: facet,
columns: [{
renderer: function(value, metaData, record) {
return '<span style="font-size: smaller;">(<span class="info-tip" data-qtip="'+this.localize('matchingDocuments')+'">'+record.getInDocumentsCount()+"</span>) </span>"+
(record.getLabel ? record.getLabel() : record.getTerm()+'<span style="font-size: smaller;"> (<span class="info-tip" data-qtip="'+this.localize('rawFreqs')+'">'+record.getRawFreq()+"</span>)</span>")
},
flex: 1
}],
bbar: [{
xtype: 'querysearchfield',
width: '100%',
tokenType: facet.replace("facet.", ""),
itemTpl: itemTpl
}],
corpus: this.getCorpus()
})
var facetCmp = facetsCmp.add(config);
facetCmp.getSelectionModel().on('selectionchange', function(model, selected) {
var labels = [];
selected.forEach(function(model) {
labels.push({facet: facetCmp.facet, label: model.getLabel ? model.getLabel() : model.getTerm()})
})
this.getFacets()[facet] = labels;
this.updateResults();
}, this)
facetCmp.on('query', function(model, selected) {
this.getFacets()[facetCmp.facet] = [];
this.updateResults();
}, this)
return facetCmp;
},
updateResults: function(queries) {
var facets = this.getFacets();
if (!queries) {
var queries = [];
for (facet in facets) {
facets[facet].forEach(function(label) {
queries.push(label.facet+":"+label.label);
})
}
if (queries) {
return this.updateResults(queries)
}
}
var results = this.queryById("results").getTargetEl();
var catalogue = this;
results.update(this.getCustomResultsHtml() ? this.getCustomResultsHtml() : new Ext.XTemplate(this.localize('noMatches')).apply([this.getCorpus().getDocumentsCount()]));
this.queryById('status').update(new Ext.XTemplate(this.localize('noMatches')).apply([this.getCorpus().getDocumentsCount()]))
this.queryById('sendToVoyant').setDisabled(true);
this.queryById('export').setDisabled(true);
if (queries && queries.length>0) {
this.mask(this.localize("loading"));
var documentQueryMatches = this.getCorpus().getDocumentQueryMatches();
documentQueryMatches.load({
params: {query: queries, includeDocIds: true},
callback: function(records, operation, success) {
this.unmask();
if (records && records.length>0) {
this.queryById('status').setHtml(records.length)
var list = "<ul>";
var matchingDocIds = [];
records.forEach(function(record) {
record.getDocIds().forEach(function(docId) {
matchingDocIds.push(docId);
var doc = documentQueryMatches.getCorpus().getDocument(docId);
var item = "<li id='"+results.getId()+'_'+docId+"' class='cataloguedoc'>";
item += "<a href='#' class='cataloguedoctitle' data='"+docId+"'>"+doc.getTitle()+"</a>";
for (facet in facets) {
if (facets[facet].length==0) {continue;}
var labelItems = "";
if (facet!='facet.title') {
var suffix = facet.replace(/^.+?\./,"");
var label = doc.get(suffix);
if (label) {
var isArray = Ext.isArray(label);
if (isArray) {
labelItems+="<li>"+suffix+"<ul>"
} else {
label = [label];
}
label.forEach(function(l) {
var isMatch = false;
facets[facet].forEach(function(f) {
if (f.label==l) {isMatch=true}
else if (f.facet.indexOf('facet')==-1) {
f.label.split(/\W+/).forEach(function(part) {
if (part.trim().length>0 && l.toLowerCase().indexOf(part.toLowerCase())>-1) {
isMatch=true;
}
})
}
})
labelItems+="<li>"+(isArray ? '' : suffix.replace('extra.','')+": ")+(isMatch ? '<span class="keyword">'+l+'</span>' : l)+"</li>"
})
if (isArray) {
labelItems+="</ul></li>";
}
}
}
if (labelItems) {
item+="<ul>"+labelItems+"</ul>";
}
}
item += "</li>";
list += item;
})
})
list += "</ul>";
results.update(list);
var me = this;
var lnks = results.query(".cataloguedoctitle");
lnks.forEach(function(lnk) {
Ext.get(lnk).on("click", function(e,el) {
this.dispatchEvent("documentSelected", me, el.getAttribute("data"));
}, me)
});
if (lnks.length==1) {
this.dispatchEvent("documentSelected", me, lnks[0].getAttribute("data"));
}
this.queryById('status').update(new Ext.XTemplate(this.localize('queryMatches')).apply([matchingDocIds.length,this.getCorpus().getDocumentsCount()]))
this.setMatchingDocIds(Ext.Array.clone(matchingDocIds));
if (matchingDocIds.length>0) {
this.queryById('export').setDisabled(false);
this.queryById('sendToVoyant').setDisabled(false);
}
// now try to load some snippets, if need be
if (facets['lexical']) {
var firstDocIds = matchingDocIds.splice(0,5);
this.loadSnippets(firstDocIds, results.first().first());
if (matchingDocIds && matchingDocIds.length>0) {
this.loadSnippets(matchingDocIds); // load the rest
}
}
}
},
scope: this
})
}
},
loadSnippets: function(docIds, elToMask) {
var results = this.queryById("results").getTargetEl();
var facets = this.getFacets();
if (facets['lexical']) {
var queries = facets['lexical'].map(function(label) {return label.facet+":"+label.label});
var contexts = this.getCorpus().getContexts({buffered: false});
if (elToMask) {
elToMask.mask(this.localize("loadingSnippets"));
}
contexts.load({
method: 'POST',
params: {
stripTags: "all",
query: queries,
docId: docIds,
perDocLimit: 3,
limit: 100,
accurateTotalNotNeeded: true
},
scope: this,
callback: function(records, operation, success) {
if (elToMask) {
elToMask.unmask();
}
if (success && Ext.isArray(records) && records.length>0) {
var snippets = {};
records.forEach(function(record) {
if (!snippets[record.getDocIndex()]) {snippets[record.getDocIndex()]=[]}
snippets[record.getDocIndex()].push(record);
})
for (docIndex in snippets) {
var id = this.getCorpus().getDocument(docIndex).getId();
var html = '<li style="list-style-type: none; font-size: smaller;">'+snippets[docIndex].map(function(snippet) {
return snippet.getHighlightedContext();
}).join(" … ")+'</li>'
var docItem = results.down("#"+results.getId()+"_"+id);
if (docItem.query("ul")) {
html="<ul>"+html+"</ul>";
}
docItem.insertHtml('beforeEnd', html)
}
}
}
})
}
},
selectFacet: function(callback) {
if (!this.facetsSelectionStore) {
var keys = {};
this.getCorpus().getDocuments().each(function(doc) {
for (var key in doc.getData()) {
if (key!="corpus" && key.indexOf("parent")!==0 && key.indexOf("-lexical")=="-1") {
keys[key] = true
}
}
});
keys = Object.keys(keys);
keys.sort();
this.facetsSelectionStore = Ext.create('Ext.data.ArrayStore', {
fields: ['text'],
data: keys.map(function(key) {return [key]})
});
}
var existingFacets = {};
this.queryById('facets').items.each(function(cmp) {
existingFacets[cmp.facet]=true;
})
this.facetsSelectionStore.filterBy(function(record) {
return !("facet."+record.get('text') in existingFacets)
})
var win = Ext.create('Ext.window.Window', {
title: this.localize("selectFacet"),
modal: true,
items: {
xtype: 'form',
width: 300,
items: {
xtype: 'combo',
store: this.facetsSelectionStore,
forceSelection: true,
width: 300
},
buttons: [{
text: this.localize("cancel"),
ui: 'default-toolbar',
glyph: 'xf00d@FontAwesome',
flex: 1,
handler: function(btn) {
btn.up('window').close();
}
},{
text: this.localize("select"),
glyph: 'xf00c@FontAwesome',
flex: 1,
handler: function(btn) {
var facet = btn.up('window').down('combo').getValue();
if (!facet) {
return this.showError(this.localize('selectValidFacet'));
} else {
callback.call(this, "facet."+facet);
btn.up('window').close();
}
},
scope: this
}]
},
bodyPadding: 5
}).show()
}
});

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src/Voyant-master/src/main/webapp/app/panel/Cirrus.js
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// assuming Cirrus library is loaded by containing page (via voyant.jsp)
/**
* Cirrus tool, a wordcloud-like visuaization.
*
* // simple cirrus
* loadCorpus("austen").tool("cirrus");
*
* // define stopwords list and styling
* loadCorpus("austen").tool("cirrus", {
* stopList: 'auto',
* style: 'width: 500px; height: 400px'
* });
*/
Ext.define('Voyant.panel.Cirrus', {
extend: 'Ext.panel.Panel',
mixins: ['Voyant.panel.Panel'],
alias: 'widget.cirrus',
statics: {
i18n: {
},
api: {
/**
* @cfg {String} stopList A comma-separated list of words, a named list or a URL to a plain text list, one word per line.
* @default auto
*
* By default this is set to 'auto' which auto-detects the document's language and loads an appropriate list (if available for that language). Set this to blank to not use the default stopList.
*
* For more information see the <a href="#!/guide/search">Stopwords documentation</a>.
*/
stopList: 'auto',
categories: undefined,
whiteList: undefined, // specify a list of words to use
/**
* @cfg {Number} limit Specify the number of terms to load (which is separate from the number of {@link #visible} terms to show) at a time).
* @default 500
*
* By default this is set to 'auto' which auto-detects the document's language and loads an appropriate list (if available for that language). Set this to blank to not use the default stopList.
*/
limit: 500,
/**
* @cfg {Number} visible Specify the number of terms that are visible at a time.
* @default 50
*/
visible: 50,
terms: undefined,
docId: undefined,
docIndex: undefined,
inlineData: undefined, // format should match CorpusTerm model, only term and rawFreq required
fontFamily: '"Palatino Linotype", "Book Antiqua", Palatino, serif',
cirrusForceFlash: false,
background: '0xffffff',
fade: true,
smoothness: 2,
diagonals: 'none' // all, bigrams, none
},
glyph: 'xf06e@FontAwesome'
},
config: {
/**
* @private
*/
mode: undefined,
/**
* @private
*/
options: [
{xtype: 'stoplistoption'},
{
xtype: 'listeditor',
name: 'whiteList'
},
{xtype: 'categoriesoption'},
// {
// // TODO this field does nothing
// xtype: 'numberfield',
// name: 'label',
// fieldLabel: 'Max words',
// labelAlign: 'right',
// value: 500,
// minValue: 50,
// step: 50,
// listeners: {
// afterrender: function(field) {
// var win = field.up("window");
// if (win && win.panel) {field.setFieldLabel(win.panel.localize("maxTerms"))}
// }
// }
// },
{xtype: 'fontfamilyoption'},
{xtype: 'colorpaletteoption'}
],
/**
* @private
*/
records: undefined,
/**
* @private
*/
terms: undefined,
/**
* @private
*/
cirrusId: undefined,
/**
* @private
*/
visLayout: undefined, // cloud layout algorithm
/**
* @private
*/
vis: undefined, // actual vis
/**
* @private
*/
tip: undefined,
/**
* @private
*/
sizeAdjustment: 100, // amount to multiply a word's relative size by
/**
* @private
*/
minFontSize: 12,
/**
* @private
*/
largestWordSize: 0,
/**
* @private
*/
smallestWordSize: 1000000
},
MODE_CORPUS: 'corpus',
MODE_DOCUMENT: 'mode_document',
layout: 'fit',
/**
* @private
*/
constructor: function(config) {
this.callParent(arguments);
this.mixins['Voyant.panel.Panel'].constructor.apply(this, arguments);
this.getApplication().getCategoriesManager().addFeature('orientation', function() { return ~~(Math.random() * 2) * 90; });
this.setCirrusId(Ext.id(null, 'cirrus_'));
},
initComponent: function (config) {
Ext.apply(this, {
title: this.localize('title'),
dockedItems: [{
dock: 'bottom',
xtype: 'toolbar',
overflowHandler: 'scroller',
items: [{
xtype: 'corpusdocumentselector',
singleSelect: true
},{
fieldLabel: this.localize('visibleTerms'),
labelWidth: 40,
width: 120,
xtype: 'slider',
increment: 25,
minValue: 25,
maxValue: 500,
listeners: {
afterrender: function(slider) {
slider.maxValue = this.getApiParam("limit")
slider.increment = parseInt(slider.maxValue/50)
slider.setValue(this.getApiParam("visible"))
},
changecomplete: function(slider, newvalue) {
this.setApiParams({visible: newvalue});
this.loadFromTermsRecords();
},
scope: this
}
}]
}]
});
this.callParent(arguments);
},
listeners: {
boxready: function() {
this.initVisLayout(); // force in case we've changed fontFamily from options
var dataString = this.getApiParam('inlineData');
if (dataString !== undefined) {
if (dataString.charAt(0)=="[") {
var jsonData = Ext.decode(dataString, true);
} else {
if (dataString.indexOf(":")>-1) {
jsonData = [];
dataString.split(",").forEach(function(term) {
parts = term.split(":");
jsonData.push({
text: parts[0],
rawFreq: parseInt(parts[1])
})
})
} else {
var terms = {}
jsonData = [];
dataString.split(",").forEach(function(term) {
if (term in terms) {
terms[term]++;
} else {
terms[term] = 1;
}
});
for (term in terms) {
jsonData.push({
text: term,
rawFreq: terms[term]
})
}
}
}
if (jsonData !== null && jsonData.length>0) {
this.setApiParam('inlineData', jsonData);
this.setTerms(jsonData);
this.buildFromTerms();
}
}
},
resize: function(panel, width, height) {
if (this.getVisLayout() && this.getCorpus()) {
this.setAdjustedSizes();
var el = this.getLayout().getRenderTarget();
width = el.getWidth();
height = el.getHeight();
el.down('svg').set({width: width, height: height});
if (this.getTerms()) {
this.getVisLayout().size([width, height]).stop().words(this.getTerms()).start();
}
}
},
loadedCorpus: function(src, corpus) {
this.getApplication().getCategoriesManager().addFeature('font', this.getApiParam('fontFamily')); // make sure the default for font is set from the api
this.initVisLayout(); // force in case we've changed fontFamily from options
if (this.getApiParam("docIndex")) {
this.fireEvent("documentSelected", this, corpus.getDocument(this.getApiParam("docIndex")));
} else if (this.getApiParam("docId")) {
this.fireEvent("documentSelected", this, corpus.getDocument(this.getApiParam("docId")));
} else {
this.loadFromCorpus(corpus);
}
},
corpusSelected: function(src, corpus) {
this.loadFromCorpus(corpus);
},
documentSelected: function(src, document) {
if (document) {
var corpus = this.getCorpus();
var document = corpus.getDocument(document);
this.setApiParam('docId', document.getId());
var documentTerms = document.getDocumentTerms({autoload: false, corpus: corpus, pageSize: this.getApiParam("maxVisible"), parentPanel: this});
this.loadFromDocumentTerms(documentTerms);
}
},
ensureCorpusView: function(src, corpus) {
if (this.getMode() != this.MODE_CORPUS) {this.loadFromCorpus(corpus);}
}
},
loadFromCorpus: function(corpus) {
var jsonData = this.getApiParam('inlineData');
if (jsonData === undefined) {
this.setApiParams({docId: undefined, docIndex: undefined});
this.loadFromCorpusTerms(corpus.getCorpusTerms({autoload: false, pageSize: this.getApiParam("maxVisible"), parentPanel: this}));
} else {
// if (jsonData !== undefined) {
// var records = [];
// for (var i = 0; i < jsonData.length; i++) {
// var wordData = jsonData[i];
// wordData.term = wordData.text; // inlineData/CorpusTerm format mismatch
// var record = Ext.create('Voyant.data.model.CorpusTerm', wordData);
// records.push(record);
// }
// this.setRecords(records);
// this.setMode(this.MODE_CORPUS);
// this.loadFromTermsRecords();
// }
}
},
loadFromDocumentTerms: function(documentTerms) {
documentTerms.load({
callback: function(records, operation, success) {
this.setMode(this.MODE_DOCUMENT);
this.setRecords(operation.getRecords()); // not sure why operation.records is different from records
this.loadFromTermsRecords();
},
scope: this,
params: this.getApiParams()
});
},
loadFromCorpusTerms: function(corpusTerms) {
corpusTerms.load({
callback: function(records, operation, success) {
this.setMode(this.MODE_CORPUS);
this.setRecords(operation.getRecords()); // not sure why operation.records is different from records
this.loadFromTermsRecords();
},
scope: this,
params: this.getApiParams()
});
},
loadFromTermsRecords: function() {
var records = this.getRecords();
var visible = this.getApiParam("visible");
if (visible>records.length) {visible=records.length;}
var terms = [];
for (var i=0; i<visible; i++) {
if (records[i].get('rawFreq')>0) {
terms.push({text: records[i].get('term').replace(/"/g,''), rawFreq: records[i].get('rawFreq')});
}
}
this.setTerms(terms);
this.buildFromTerms();
},
initVisLayout: function(forceLayout) {
if (forceLayout || this.getVisLayout() == undefined) {
var cirrusForceFlash = this.getApiParam('cirrusForceFlash');
if (cirrusForceFlash == 'true' || cirrusForceFlash === true) {
this.setApiParam('cirrusForceFlash', true);
var id = this.getCirrusId();
var appVars = {
id: id
};
var keys = ['background','fade','smoothness','diagonals'];
for (var i = 0; i < keys.length; i++) {
appVars[keys[i]] = this.getApiParam(keys[i]);
}
var swfscript = '<script type="text/javascript" src="'+this.getApplication().getBaseUrl()+'resources/swfobject/swfobject.js'+'"></script>';
var cirrusLinks = '<script type="text/javascript">'+
'cirrusClickHandler'+id+' = function(word, value) {\n'+
'\tif (window.console && console.info) console.info(word, value);\n'+
'\tvar cirrusTool = Ext.getCmp("'+this.id+'");\n'+
'\tcirrusTool.dispatchEvent("termsClicked", cirrusTool, [word]);\n'+
'}\n'+
'cirrusLoaded'+id+' = function() {\n'+
'\tif (window.console && console.info) console.info("cirrus flash loaded");\n'+
'}\n'+
'cirrusPNGHandler'+id+' = function(base64String) {\n'+
'\tvar cirrusTool = Ext.getCmp("'+this.id+'");\n'+
'\tcirrusTool.cirrusPNGHandler(base64String);\n'+
'}'+
'</script>';
this.update(swfscript+cirrusLinks, true, function() {
function loadFlash(component) {
if (typeof swfobject !== 'undefined') {
var el = component.getLayout().getRenderTarget();
var width = el.getWidth();
var height = el.getHeight();
var cirrusFlash = component.getApplication().getBaseUrl()+'resources/cirrus/flash/Cirrus.swf';
component.add({
xtype: 'flash',
id: appVars.id,
url: cirrusFlash,
width: width,
height: height,
flashVars: appVars,
flashParams: {
menu: 'false',
scale: 'showall',
allowScriptAccess: 'always',
bgcolor: '#222222',
wmode: 'opaque'
}
});
component.cirrusFlashApp = Ext.get(appVars.id).first().dom;
} else {
setTimeout(loadFlash, 50, component);
}
}
loadFlash(this);
}, this);
} else {
var el = this.getLayout().getRenderTarget();
el.update(""); // make sure to clear existing contents (especially for re-layout)
var width = el.getWidth();
var height = el.getHeight();
this.setVisLayout(
d3.layoutCloud()
.size([width, height])
.overflow(true)
.padding(1)
.rotate(function(d) { return this.getApplication().getCategoriesManager().getFeatureForTerm('orientation', d.text); }.bind(this))
.spiral('archimedean')
.font(function(d) { return this.getApplication().getCategoriesManager().getFeatureForTerm('font', d.text); }.bind(this))
.fontSize(function(d) {return d.fontSize; }.bind(this))
.text(function(d) { return d.text; })
.on('end', this.draw.bind(this))
);
var svg = d3.select(el.dom).append('svg').attr('id',this.getCirrusId()).attr('class', 'cirrusGraph').attr('width', width).attr('height', height);
this.setVis(svg.append('g').attr('transform', 'translate(' + width / 2 + ',' + height / 2 + ')'));
if (this.getTip() === undefined) {
this.setTip(Ext.create('Ext.tip.Tip', {}));
}
}
}
},
buildFromTerms: function() {
var terms = this.getTerms();
if (this.rendered && terms) {
if (this.getApiParam('cirrusForceFlash') === true) {
if (this.cirrusFlashApp !== undefined && this.cirrusFlashApp.clearAll !== undefined) {
var words = [];
for (var i = 0; i < terms.length; i++) {
var t = terms[i];
if (!t.text && t.term) {t.text=t.term;}
words.push({word: t.text, size: t.rawFreq, label: t.rawFreq});
}
this.cirrusFlashApp.clearAll();
this.cirrusFlashApp.addWords(words);
this.cirrusFlashApp.arrangeWords();
} else {
Ext.defer(this.buildFromTerms, 50, this);
}
} else {
var minSize = 1000;
var maxSize = -1;
for (var i = 0; i < terms.length; i++) {
var size = terms[i].rawFreq;
if (size < minSize) minSize = size;
if (size > maxSize) maxSize = size;
}
this.setSmallestWordSize(minSize);
this.setLargestWordSize(maxSize);
// set the relative sizes for each word (0.0 to 1.0), then adjust based on available area
this.setRelativeSizes();
this.setAdjustedSizes();
// var fontSizer = d3.scalePow().range([10, 100]).domain([minSize, maxSize]);
this.getVisLayout().words(terms).start();
}
} else {
Ext.defer(this.buildFromTerms, 50, this);
}
},
draw: function(words, bounds) {
var panel = this;
var el = this.getLayout().getRenderTarget();
var width = this.getVisLayout().size()[0];
var height = this.getVisLayout().size()[1];
var scale = bounds ? Math.min(
width / Math.abs(bounds[1].x - width / 2),
width / Math.abs(bounds[0].x - width / 2),
height / Math.abs(bounds[1].y - height / 2),
height / Math.abs(bounds[0].y - height / 2)
) / 2 : 1;
var t = d3.transition().duration(1000);
var nodes = this.getVis().selectAll('text').data(words, function(d) {return d.text;});
nodes.exit().transition(t)
.style('font-size', '1px')
.remove();
var nodesEnter = nodes.enter().append('text')
.text(function(d) { return d.text; })
.attr('text-anchor', 'middle')
.attr('data-freq', function(d) { return d.rawFreq; })
.attr('transform', function(d) { return 'translate(' + [d.x, d.y] + ')rotate(' + d.rotate + ')'; })
.style('font-family', function(d) { return panel.getApplication().getCategoriesManager().getFeatureForTerm('font', d.text); })
.style('fill', function(d) { return panel.getApplication().getColorForTerm(d.text, true); })
.style('font-size', '1px')
.on('click', function(obj) {panel.dispatchEvent('termsClicked', panel, [obj.text]);})
.on('mouseover', function(obj) {
this.getTip().show();
}.bind(this))
.on('mousemove', function(obj) {
var tip = this.getTip();
tip.update(obj.text+': '+obj.rawFreq);
var container = Ext.get(this.getCirrusId()).dom;
var coords = d3.mouse(container);
coords[1] += 30;
tip.setPosition(coords);
}.bind(this))
.on('mouseout', function(obj) {
this.getTip().hide();
}.bind(this));
var nodesUpdate = nodes.merge(nodesEnter);
nodesUpdate.transition(t)
.style('font-family', function(d) { return panel.getApplication().getCategoriesManager().getFeatureForTerm('font', d.text); })
.style('fill', function(d) { return panel.getApplication().getColorForTerm(d.text, true); })
.attr('transform', function(d) { return 'translate(' + [d.x, d.y] + ')rotate(' + d.rotate + ')'; })
.style('font-size', function(d) { return d.fontSize + 'px'; });
this.getVis().transition(t).attr('transform', 'translate(' + width / 2 + ',' + height / 2 + ')scale(' + scale + ')');
},
map: function(value, istart, istop, ostart, ostop) {
return ostart + (ostop - ostart) * ((value - istart) / (istop - istart));
},
calculateSizeAdjustment: function() {
var terms = this.getTerms();
if (terms !== undefined) {
var el = this.getLayout().getRenderTarget();
var stageArea = el.getWidth() * el.getHeight();
if (stageArea < 100000) this.setMinFontSize(8);
else this.setMinFontSize(12);
var pixelsPerWord = stageArea / terms.length;
var totalWordsSize = 0;
for (var i = 0; i < terms.length; i++) {
var word = terms[i];
var wordArea = this.calculateWordArea(word);
totalWordsSize += wordArea;
}
this.setSizeAdjustment(stageArea / totalWordsSize);
}
},
calculateWordArea: function(word) {
var baseSize = Math.log(word.relativeSize * 10) * Math.LOG10E; // take the relativeSize (0.1 to 1.0), multiply by 10, then get the base-10 log of it
var height = (baseSize + word.relativeSize) / 2; // find the average between relativeSize and the log
var width = 0; //(baseSize / 1.5) * word.text.length;
for (var i = 0; i < word.text.length; i++ ) {
var letter = word.text.charAt(i);
if (letter == 'f' || letter == 'i' || letter == 'j' || letter == 'l' || letter == 'r' || letter == 't') width += baseSize / 3;
else if (letter == 'm' || letter == 'w') width += baseSize / (4 / 3);
else width += baseSize / 1.9;
}
var wordArea = height * width;
return wordArea;
},
setAdjustedSizes: function() {
this.calculateSizeAdjustment();
var terms = this.getTerms();
if (terms !== undefined) {
for (var i = 0; i < terms.length; i++) {
var term = terms[i];
var adjustedSize = this.findNewRelativeSize(term);
term.fontSize = adjustedSize > this.getMinFontSize() ? adjustedSize : this.getMinFontSize();
}
}
},
setRelativeSizes: function() {
var terms = this.getTerms();
if (terms !== undefined) {
for (var i = 0; i < terms.length; i++) {
var word = terms[i];
word.relativeSize = this.map(word.rawFreq, this.getSmallestWordSize(), this.getLargestWordSize(), 0.1, 1);
}
}
},
findNewRelativeSize: function(word) {
var areaMultiplier = this.getSizeAdjustment();
var area = this.calculateWordArea(word) * areaMultiplier;
// given the area = (x+6)*(2*x/3*y), solve for x
var newRelativeSize = (Math.sqrt(6) * Math.sqrt(6 * Math.pow(word.text.length, 2) + area * word.text.length) - 6 * word.text.length) / (2 * word.text.length);
return newRelativeSize;
}
});

881
src/Voyant-master/src/main/webapp/app/panel/CollocatesGraph.js
Unescape View File

@ -0,0 +1,881 @@
Ext.define('Voyant.panel.CollocatesGraph', {
extend: 'Ext.panel.Panel',
mixins: ['Voyant.panel.Panel'],
alias: 'widget.collocatesgraph',
statics: {
i18n: {
},
api: {
query: undefined,
mode: undefined,
limit: 5,
stopList: 'auto',
terms: undefined,
context: 5,
centralize: undefined
},
glyph: 'xf1e0@FontAwesome'
},
config: {
options: [{xtype: 'stoplistoption'},{
xtype: 'categoriesoption'
}],
nodeData: undefined,
linkData: undefined,
visId: undefined,
vis: undefined,
visLayout: undefined,
nodes: undefined,
links: undefined,
zoom: undefined,
dragging: false,
contextMenu: undefined,
currentNode: undefined,
networkMode: undefined,
graphStyle: {
keywordNode: {
normal: {
fill: '#c6dbef',
stroke: '#6baed6'
},
highlight: {
fill: '#9ecae1',
stroke: '#3182bd'
}
},
contextNode: {
normal: {
fill: '#fdd0a2',
stroke: '#fdae6b'
},
highlight: {
fill: '#fd9a53',
stroke: '#e6550d'
}
},
link: {
normal: {
stroke: '#000000',
strokeOpacity: 0.1
},
highlight: {
stroke: '#000000',
strokeOpacity: 0.5
}
}
},
graphPhysics: {
defaultMode: {
damping: 0.4, // 0 = no damping, 1 = full damping
centralGravity: 0.1, // 0 = no grav, 1 = high grav
nodeGravity: -50, // negative = repel, positive = attract
springLength: 100,
springStrength: 0.25, // 0 = not strong, >1 = probably too strong
collisionScale: 1.25 // 1 = default, 0 = no collision
},
centralizedMode: {
damping: 0.4, // 0 = no damping, 1 = full damping
centralGravity: 0.1, // 0 = no grav, 1 = high grav
nodeGravity: -1, // negative = repel, positive = attract
springLength: 200,
springStrength: 1, // 0 = not strong, >1 = probably too strong
collisionScale: 1 // 1 = default, 0 = no collision
}
}
},
DEFAULT_MODE: 0,
CENTRALIZED_MODE: 1,
constructor: function(config) {
this.setNodeData([]);
this.setLinkData([]);
this.setVisId(Ext.id(null, 'links_'));
this.callParent(arguments);
this.mixins['Voyant.panel.Panel'].constructor.apply(this, arguments);
},
initComponent: function() {
var me = this;
Ext.apply(me, {
title: this.localize('title'),
dockedItems: [{
dock: 'bottom',
xtype: 'toolbar',
overflowHandler: 'scroller',
items: [{
xtype: 'querysearchfield'
},{
text: me.localize('clearTerms'),
glyph: 'xf014@FontAwesome',
handler: this.resetGraph,
scope: me
},this.localize('context'),{
xtype: 'slider',
itemId: 'contextSlider',
minValue: 3,
value: 5,
maxValue: 30,
increment: 2,
width: 50,
listeners: {
render: function(slider) {
slider.setValue(this.getApiParam('context'));
},
changecomplete: function(slider, newValue) {
this.setApiParam('context', slider.getValue());
if (this.getNetworkMode() === this.DEFAULT_MODE) {
var terms = this.getNodeData().map(function(node) { return node.term; });
if (terms.length > 0) {
this.setNodeData([]);
this.setLinkData([]);
this.refresh();
this.loadFromQuery(terms);
}
}
},
scope: me
}
}]
}]
});
this.setContextMenu(Ext.create('Ext.menu.Menu', {
renderTo: Ext.getBody(),
items: [{
xtype: 'box',
itemId: 'label',
margin: '5px 0px 5px 5px',
html: ''
},{
xtype: 'menuseparator'
},{
xtype: 'menucheckitem',
text: 'Fixed',
itemId: 'fixed',
listeners: {
checkchange: function(c, checked, e) {
var node = this.getCurrentNode();
if (node !== undefined) {
var data = {
fixed: checked
};
if (checked) {
data.fx = node.x;
data.fy = node.y;
} else {
data.fx = null;
data.fy = null;
}
this.updateDataForNode(node.id, data);
}
},
scope: this
}
},{
xtype: 'button',
text: 'Fetch Collocates',
style: 'margin: 5px;',
handler: function(b, e) {
var node = this.getCurrentNode();
if (node !== undefined) {
if (this.getNetworkMode() === this.CENTRALIZED_MODE) {
this.resetGraph();
this.setNetworkMode(this.DEFAULT_MODE);
this.setApiParam('centralize', undefined);
node.start = 0;
node.limit = this.getApiParam('limit');
}
this.fetchCollocatesForNode(node);
}
},
scope: this
},{
xtype: 'button',
text: 'Centralize',
style: 'margin: 5px;',
handler: function(b, e) {
var node = this.getCurrentNode();
if (node !== undefined) {
this.doCentralize(node.term);
}
this.getContextMenu().hide();
},
scope: this
},{
xtype: 'button',
text: 'Remove',
style: 'margin: 5px;',
handler: function(b, e) {
var node = this.getCurrentNode();
if (node !== undefined) {
this.removeNode(node.id);
}
b.up('menu').hide();
},
scope: this
}]
}));
this.on('loadedCorpus', function(src, corpus) {
if (this.isVisible()) {
this.initLoad();
}
}, this);
this.on('activate', function() { // load after tab activate (if we're in a tab panel)
if (this.getCorpus()) {
if (this.getNodeData().length === 0) { // only initLoad if there isn't already data
Ext.Function.defer(this.initLoad, 100, this);
}
}
}, this);
this.on('query', function(src, query) {this.loadFromQuery(query);}, this);
this.on('resize', function(panel, width, height) {
var vis = Ext.get(this.getVisId());
if (vis) {
var el = this.body;//this.getLayout().getRenderTarget();
var elHeight = el.getHeight();
var elWidth = el.getWidth();
vis.el.dom.setAttribute('width', elWidth);
vis.el.dom.setAttribute('height', elHeight);
this.getVisLayout()
.force('x', d3.forceX(elWidth/2))
.force('y', d3.forceY(elHeight/2));
// .alpha(0.5).restart(); // restarting physics messes up zoomToFit
Ext.Function.defer(this.zoomToFit, 100, this);
// this.zoomToFit();
}
}, this);
me.callParent(arguments);
},
initLoad: function() {
this.initGraph();
this.setNetworkMode(this.DEFAULT_MODE);
if (this.getApiParam('centralize')) {
this.setNetworkMode(this.CENTRALIZED_MODE);
var term = this.getApiParam('centralize');
this.doCentralize(term);
} else {
var limit = 3;
var query = this.getApiParam('query');
if (query !== undefined) {
limit = Ext.isArray(query) ? query.length : query.split(',').length;
}
this.getCorpus().getCorpusTerms({autoLoad: false}).load({
params: {
limit: limit,
query: query,
stopList: this.getApiParam('stopList'),
categories: this.getApiParam("categories")
},
callback: function(records, operation, success) {
if (success) {
this.loadFromCorpusTermRecords(records);
}
},
scope: this
});
}
},
loadFromQuery: function(query) {
if (Ext.isArray(query) && query.length==0) {
this.setApiParam("query", undefined);
this.resetGraph();
return;
}
this.setApiParams({
mode: 'corpus',
query: query
});
var params = this.getApiParams();
params.noCache=true;
(Ext.isString(query) ? [query] : query).forEach(function(q) {
this.getCorpus().getCorpusCollocates({autoLoad: false}).load({
params: Ext.apply(Ext.clone(params), {query: q}),
callback: function(records, operations, success) {
if (success) {
this.loadFromCorpusCollocateRecords(records);
}
},
scope: this
});
}, this);
},
loadFromCorpusTermRecords: function(corpusTerms) {
if (Ext.isArray(corpusTerms) && corpusTerms.length>0) {
var terms = [];
corpusTerms.forEach(function(corpusTerm) {
terms.push(corpusTerm.getTerm());
});
this.loadFromQuery(terms);
}
},
loadFromCorpusCollocateRecords: function(records, keywordId) {
if (Ext.isArray(records)) {
var start = this.getApiParam('limit');
var el = this.getLayout().getRenderTarget();
var cX = el.getWidth()/2;
var cY = el.getHeight()/2;
var existingKeys = {};
this.getNodeData().forEach(function(item) {
existingKeys[item.id] = true;
}, this);
var newNodes = [];
var newLinks = [];
records.forEach(function(corpusCollocate, index) {
var term = corpusCollocate.getTerm();
var contextTerm = corpusCollocate.getContextTerm();
var termFreq = corpusCollocate.getKeywordRawFreq();
var contextFreq = corpusCollocate.getContextTermRawFreq();
var termValue = termFreq;
var contextValue = contextFreq;
if (this.getNetworkMode() === this.CENTRALIZED_MODE) {
termValue = 0;
contextValue = Math.log(contextFreq);
}
var termEntry = undefined;
var contextTermEntry = undefined;
if (index == 0) { // only process keyword once
if (keywordId === undefined) keywordId = this.idGet(term);
if (existingKeys[keywordId] !== undefined) {
this.updateDataForNode(keywordId, {
title: term+' ('+termFreq+')',
type: 'keyword',
value: termValue
});
} else {
existingKeys[keywordId] = true;
termEntry = {
id: keywordId,
term: term,
title: term+' ('+termFreq+')',
type: 'keyword',
value: termValue,
start: start,
fixed: false,
x: cX,
y: cY
};
newNodes.push(termEntry);
}
}
if (term != contextTerm) {
var contextId = this.idGet(contextTerm);
if (existingKeys[contextId] !== undefined) {
} else {
existingKeys[contextId] = true;
contextTermEntry = {
id: contextId,
term: contextTerm,
title: contextTerm+' ('+contextFreq+')',
type: 'context',
value: contextValue,
start: 0,
fixed: false,
x: cX,
y: cY
};
newNodes.push(contextTermEntry);
}
var existingLink = null;
var linkData = this.getLinkData();
for (var i = 0; i < linkData.length; i++) {
var link = linkData[i];
if ((link.source.id == keywordId && link.target.id == contextId) || (link.source.id == contextId && link.target.id == keywordId)) {
existingLink = link;
break;
}
}
var linkValue = corpusCollocate.getContextTermRawFreq();
if (existingLink === null) {
newLinks.push({source: keywordId, target: contextId, value: linkValue, id: keywordId+'-'+contextId});
} else if (existingLink.value < linkValue) {
// existingLink.value = linkValue;
}
}
}, this);
this.setNodeData(this.getNodeData().concat(newNodes));
this.setLinkData(this.getLinkData().concat(newLinks));
this.refresh();
}
},
idGet: function(term) {
return term.replace(/\W/g, '_');
},
updateDataForNode: function(nodeId, dataObj) {
var data = this.getNodeData();
for (var i = 0; i < data.length; i++) {
if (data[i].id === nodeId) {
Ext.apply(data[i], dataObj);
break;
}
}
},
removeNode: function(nodeId, removeOrphans) {
var data = this.getNodeData();
for (var i = 0; i < data.length; i++) {
if (data[i].id === nodeId) {
data.splice(i, 1);
break;
}
}
data = this.getLinkData();
for (var i = data.length-1; i >= 0; i--) {
if (data[i].source.id === nodeId || data[i].target.id === nodeId) {
data.splice(i, 1);
}
}
this.setApiParam("query", Ext.Array.remove(Ext.Array.from(this.getApiParam("query")), nodeId));
if (removeOrphans) {
// TODO
}
this.refresh();
},
doCentralize: function(term) {
this.setApiParam("centralize",term);
this.resetGraph();
this.setNetworkMode(this.CENTRALIZED_MODE);
var data = {
id: this.idGet(term),
term: term,
title: term+' ('+1+')',
type: 'keyword',
value: 1000,
start: 0
};
this.setNodeData([data]);
this.refresh();
var centralizeLimit = 150;
var limit = this.getApiParam('limit');
this.setApiParam('limit', centralizeLimit);
this.fetchCollocatesForNode(data);
this.setApiParam('limit', limit);
},
// called by setNetworkMode
applyNetworkMode: function(mode) {
if (this.getVisLayout()) {
if (mode === this.DEFAULT_MODE) {
var physics = this.getGraphPhysics().defaultMode;
this.getVisLayout()
.velocityDecay(physics.damping)
.force('link', d3.forceLink().id(function(d) { return d.id; }).distance(physics.springLength).strength(physics.springStrength))
.force('charge', d3.forceManyBody().strength(physics.nodeGravity))
.force('collide', d3.forceCollide(function(d) { return Math.sqrt(d.bbox.width * d.bbox.height) * physics.collisionScale; }));
this.getVisLayout().force('x').strength(physics.centralGravity);
this.getVisLayout().force('y').strength(physics.centralGravity);
} else {
var physics = this.getGraphPhysics().centralizedMode;
this.getVisLayout()
.velocityDecay(physics.damping)
.force('link', d3.forceLink().id(function(d) { return d.id; }).distance(physics.springLength).strength(physics.springStrength))
.force('charge', d3.forceManyBody().strength(function(d) {
if (d.type === 'keyword') {
return -10000;
} else {
return 0;
}
}))
.force('collide', d3.forceCollide(function(d) {
if (d.type === 'keyword') {
return d.value;
} else {
return Math.sqrt(d.bbox.width * d.bbox.height) * physics.collisionScale;
}
}));
this.getVisLayout().force('x').strength(physics.centralGravity);
this.getVisLayout().force('y').strength(physics.centralGravity);
}
}
return mode; // need to return mode for it to actually be set
},
initGraph: function() {
var el = this.getLayout().getRenderTarget();
el.update('');
var width = el.getWidth();
var height = el.getHeight();
this.setVisLayout(d3.forceSimulation()
.force('x', d3.forceX(width/2))
.force('y', d3.forceY(height/2))
.on('tick', function() {
this.getLinks()
.attr('x1', function(d) { return d.source.x; })
.attr('y1', function(d) { return d.source.y; })
.attr('x2', function(d) { return d.target.x; })
.attr('y2', function(d) { return d.target.y; });
// this.getLinks().attr('d', function(d) {
// return 'M' + d[0].x + ',' + d[0].y
// + 'S' + d[1].x + ',' + d[1].y
// + ' ' + d[2].x + ',' + d[2].y;
// });
this.getNodes().attr('transform', function(d) {
var x = d.x;
var y = d.y;
if (this.getNetworkMode() === this.DEFAULT_MODE || d.type !== 'keyword') {
x -= d.bbox.width*0.5;
y -= d.bbox.height*0.5;
} else {
}
return 'translate('+x+','+y+')';
}.bind(this));
if (!this.getDragging() && this.getVisLayout().alpha() < 0.075) {
this.getVisLayout().alpha(-1); // trigger end event
}
}.bind(this))
.on('end', function() {
Ext.Function.defer(this.zoomToFit, 100, this);
}.bind(this))
);
var svg = d3.select(el.dom).append('svg').attr('id',this.getVisId()).attr('class', 'linksGraph').attr('width', width).attr('height', height);
var g = svg.append('g');
var zoom = d3.zoom()
.scaleExtent([1/4, 4])
.on('zoom', function() {
g.attr('transform', d3.event.transform);
});
this.setZoom(zoom);
svg.call(zoom);
svg.on('click', function() {
this.getContextMenu().hide();
}.bind(this));
this.setLinks(g.append('g').attr('class', 'links').selectAll('.link'));
this.setNodes(g.append('g').attr('class', 'nodes').selectAll('.node'));
this.setVis(g);
},
resetGraph: function() {
this.setNodeData([]);
this.setLinkData([]);
this.setNetworkMode(this.DEFAULT_MODE); // ? there was another version of this function without this
this.refresh();
},
refresh: function() {
var me = this;
var nodeData = this.getNodeData();
var linkData = this.getLinkData();
// var nodeMap = d3.map(nodeData, function(d) { return d.id; });
// var bilinks = [];
// linkData.forEach(function(link) {
// var s = link.source = nodeMap.get(link.source);
// var t = link.target = nodeMap.get(link.target);
// var i = {};
// nodeData.push(i);
// linkData.push({source: s, target: i}, {source: i, target: t});
// bilinks.push([s,i,t]);
// });
var link = this.getLinks().data(linkData, function(d) { return d.id; });
link.exit().remove();
var linkEnter = link.enter().append('line')
.attr('class', 'link')
.attr('id', function(d) { return d.id; })
.on('mouseover', me.linkMouseOver.bind(me))
.on('mouseout', me.linkMouseOut.bind(me))
.on('click', function(data) {
d3.event.stopImmediatePropagation();
d3.event.preventDefault();
this.dispatchEvent('termsClicked', this, ['"'+data.source.term+' '+data.target.term+'"~'+this.getApiParam('context')]);
}.bind(me))
// .style('fill', 'none')
.style('cursor', 'pointer')
.style('stroke-width', function(d) {
if (me.getNetworkMode() === me.DEFAULT_MODE) {
return Math.max(1, Math.min(15, Math.sqrt(d.value)));
} else {
return 1;
}
});
this.setLinks(linkEnter.merge(link));
var node = this.getNodes().data(nodeData, function(d) { return d.id; });
node.exit().remove();
var nodeEnter = node.enter().append('g')
.attr('class', function(d) { return 'node '+d.type; })
.attr('id', function(d) { return d.id; })
.on('mouseover', me.nodeMouseOver.bind(me))
.on('mouseout', me.nodeMouseOut.bind(me))
.on('click', function(data) {
d3.event.stopImmediatePropagation();
d3.event.preventDefault();
this.dispatchEvent('termsClicked', this, [data.term]);
}.bind(me))
.on('dblclick', function(data) {
d3.event.stopImmediatePropagation();
d3.event.preventDefault();
this.fetchCollocatesForNode(data);
}.bind(me))
.on('contextmenu', function(d, i) {
d3.event.preventDefault();
// me.getTip().hide();
var menu = me.getContextMenu();
menu.queryById('label').setHtml(d.term);
menu.queryById('fixed').setChecked(d.fixed);
menu.showAt(d3.event.pageX+10, d3.event.pageY-50);
})
.call(d3.drag()
.on('start', function(d) {
me.setDragging(true);
if (!d3.event.active) me.getVisLayout().alpha(0.3).restart();
d.fx = d.x;
d.fy = d.y;
d.fixed = true;
})
.on('drag', function(d) {
me.getVisLayout().alpha(0.3); // don't let simulation end while the user is dragging
d.fx = d3.event.x;
d.fy = d3.event.y;
if (me.isMasked()) {
if (!me.isOffCanvas(d3.event.x, d3.event.y)) {
me.unmask();
}
} else if (me.isOffCanvas(d3.event.x, d3.event.y)) {
me.mask(me.localize('releaseToRemove'));
}
})
.on('end', function(d) {
me.setDragging(false);
// if (!d3.event.active) me.getVisLayout().alpha(0);
if (d.fixed != true) {
d.fx = null;
d.fy = null;
}
if (me.isOffCanvas(d3.event.x, d3.event.y)) {
me.unmask();
me.mask(me.localize('cleaning'));
me.removeNode(d.id);
me.unmask();
}
})
);
nodeEnter.append('title').text(function(d) { return d.title; });
if (this.getNetworkMode() === this.DEFAULT_MODE) {
nodeEnter.append('rect')
.style('stroke-width', 1)
.style('stroke-opacity', 1);
} else {
nodeEnter.filter(function(d) { return d.type === 'keyword'; }).append('circle')
.style('stroke-width', 1)
.style('stroke-opacity', 1);
}
nodeEnter.append('text')
.attr('font-family', function(d) { return me.getApplication().getCategoriesManager().getFeatureForTerm('font', d.term); })
.attr('font-size', function(d) { return Math.max(10, Math.sqrt(d.value)); })
.text(function(d) { return d.term; })
.each(function(d) { d.bbox = this.getBBox(); }) // set bounding box for later use
.style('cursor', 'pointer')
.style('user-select', 'none')
.attr('dominant-baseline', 'middle');
this.setNodes(nodeEnter.merge(node));
if (this.getNetworkMode() === this.DEFAULT_MODE) {
this.getVis().selectAll('rect')
.attr('width', function(d) { return d.bbox.width+16; })
.attr('height', function(d) { return d.bbox.height+8; })
.attr('rx', function(d) { return Math.max(2, d.bbox.height * 0.2); })
.attr('ry', function(d) { return Math.max(2, d.bbox.height * 0.2); })
.call(this.applyNodeStyle.bind(this));
this.getVis().selectAll('text')
.attr('dx', 8)
.attr('dy', function(d) { return d.bbox.height*0.5+4; });
} else {
this.getVis().selectAll('circle')
.attr('r', function(d) { return Math.min(150, d.bbox.width); })
.call(this.applyNodeStyle.bind(this));
this.getVis().selectAll('text')
.attr('dx', function(d) {
if (d.type === 'keyword') {
return -d.bbox.width*0.5;
} else {
return 8;
}
})
.attr('dy', function(d) {
if (d.type === 'keyword') {
return 0;
} else {
return d.bbox.height*0.5+4;
}
});
}
this.getVis().selectAll('line').call(this.applyLinkStyle.bind(this));
this.getVisLayout().nodes(nodeData);
this.getVisLayout().force('link').links(linkData);
this.getVisLayout().alpha(1).restart();
},
isOffCanvas: function(x, y) {
var vis = Ext.get(this.getVisId());
return x < 0 || y < 0 || x > vis.getWidth() || y > vis.getHeight();
},
zoomToFit: function(paddingPercent, transitionDuration) {
var bounds = this.getVis().node().getBBox();
var width = bounds.width;
var height = bounds.height;
var midX = bounds.x + width/2;
var midY = bounds.y + height/2;
var svg = this.getVis().node().parentElement;
var svgRect = svg.getBoundingClientRect();
var fullWidth = svgRect.width;
var fullHeight = svgRect.height;
var scale = (paddingPercent || 0.8) / Math.max(width/fullWidth, height/fullHeight);
var translate = [fullWidth/2 - scale*midX, fullHeight/2 - scale*midY];
if (width<1) {return} // FIXME: something strange with spyral
d3.select(svg)
.transition()
.duration(transitionDuration || 500)
.call(this.getZoom().transform, d3.zoomIdentity.translate(translate[0],translate[1]).scale(scale));
},
applyNodeStyle: function(sel, nodeState) {
var state = nodeState === undefined ? 'normal' : nodeState;
sel.style('fill', function(d) { var type = d.type+'Node'; return this.getGraphStyle()[type][state].fill; }.bind(this));
sel.style('stroke', function(d) { var type = d.type+'Node'; return this.getGraphStyle()[type][state].stroke; }.bind(this));
},
applyLinkStyle: function(sel, linkState) {
var state = linkState === undefined ? 'normal' : linkState;
sel.style('stroke', function(d) { return this.getGraphStyle().link[state].stroke; }.bind(this));
sel.style('stroke-opacity', function(d) { return this.getGraphStyle().link[state].strokeOpacity; }.bind(this));
},
linkMouseOver: function(d) {
this.getVis().selectAll('line').call(this.applyLinkStyle.bind(this));
this.getVis().select('#'+d.id).call(this.applyLinkStyle.bind(this), 'highlight');
},
linkMouseOut: function(d) {
this.getVis().selectAll('line').call(this.applyLinkStyle.bind(this));
},
nodeMouseOver: function(d) {
this.setCurrentNode(d);
this.getVis().selectAll('rect').call(this.applyNodeStyle.bind(this));
this.getLinks().each(function(link) {
var id;
if (link.source.id == d.id) {
id = link.target.id;
} else if (link.target.id == d.id) {
id = link.source.id;
}
if (id !== undefined) {
this.getVis().select('#'+id+' rect').call(this.applyNodeStyle.bind(this), 'highlight');
this.getVis().select('#'+link.id).call(this.applyLinkStyle.bind(this), 'highlight');
}
}.bind(this));
this.getVis().select('#'+d.id+' rect')
.style('stroke-width', 3)
.call(this.applyNodeStyle.bind(this), 'highlight');
},
nodeMouseOut: function(d) {
if (!this.getContextMenu().isVisible()) {
this.setCurrentNode(undefined);
}
this.getVis().selectAll('rect')
.style('stroke-width', 1)
.call(this.applyNodeStyle.bind(this));
this.getVis().selectAll('line')
.call(this.applyLinkStyle.bind(this));
},
fetchCollocatesForNode: function(d) {
var limit = this.getApiParam('limit');
var query = this.getApiParam("query");
var query = Ext.Array.from(this.getApiParam("query"));
Ext.Array.include(query, d.term)
this.setApiParam("query", query);
var corpusCollocates = this.getCorpus().getCorpusCollocates({autoLoad: false});
corpusCollocates.load({
params: Ext.apply(this.getApiParams(), {query: d.term, start: d.start, limit: limit}),
callback: function(records, operation, success) {
if (success) {
this.updateDataForNode(d.id, {
start: d.start+limit
});
this.loadFromCorpusCollocateRecords(records, d.id);
}
},
scope: this
});
}
});

56
src/Voyant-master/src/main/webapp/app/panel/CollocatesSet.js
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Ext.define('Voyant.panel.CollocatesSet', {
extend: 'Ext.panel.Panel',
requires: ['Voyant.panel.ScatterPlot','Voyant.panel.Documents', 'Voyant.panel.Trends', 'Voyant.panel.Contexts'],
mixins: ['Voyant.panel.Panel'],
alias: 'widget.collocatesset',
statics: {
i18n: {
},
glyph: 'xf17a@FontAwesome'
},
constructor: function(config) {
this.callParent(arguments);
this.mixins['Voyant.panel.Panel'].constructor.apply(this, arguments);
},
layout: 'vbox',
header: false,
items: [{
layout: 'hbox',
align: 'stretch',
width: '100%',
height: '100%',
flex: 2,
defaults: {
width: '100%',
height: '100%',
flex: 1,
frame: true,
border: true
},
items: [{
xtype: 'corpusterms'
},{
xtype: 'documentterms'
},{
xtype: 'corpuscollocates'
}]
},{
width: '100%',
height: '100%',
split: {width: 5},
layout: 'hbox',
flex: 3,
defaults: {
width: '100%',
height: '100%',
flex: 1,
frame: true,
border: true
},
items: [{
xtype: 'contexts'
},{
xtype: 'collocatesgraph'
}]
}]
})

310
src/Voyant-master/src/main/webapp/app/panel/Contexts.js
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Ext.define('Voyant.panel.Contexts', {
extend: 'Ext.grid.Panel',
mixins: ['Voyant.panel.Panel'],
requires: ['Voyant.data.store.Contexts'],
alias: 'widget.contexts',
isConsumptive: true,
statics: {
i18n: {
},
api: {
query: undefined,
docId: undefined,
docIndex: undefined,
stopList: 'auto',
context: 5,
expand: 50
},
glyph: 'xf0ce@FontAwesome'
},
config: {
options: [{xtype: 'stoplistoption'},{xtype: 'categoriesoption'}]
},
constructor: function() {
this.callParent(arguments);
this.mixins['Voyant.panel.Panel'].constructor.apply(this, arguments);
},
initComponent: function() {
var me = this;
Ext.apply(me, {
title: this.localize('title'),
emptyText: this.localize("emptyText"),
store : Ext.create("Voyant.data.store.ContextsBuffered", {
parentPanel: this,
proxy: {
extraParams: {
stripTags: "all"
}
}
// sortOnLoad: true,
// sorters: {
// property: 'position',
// direction: 'ASC'
// }
}),
selModel: {
type: 'rowmodel',
listeners: {
selectionchange: {
fn: function(sm, selections) {
this.getApplication().dispatchEvent('termLocationClicked', this, selections);
},
scope: this
}
}
},
plugins: [{ // the expander slider assumes there's only one plugin, needs to be updated if changed
ptype: 'rowexpander',
rowBodyTpl : new Ext.XTemplate('')
}],
dockedItems: [{
dock: 'bottom',
xtype: 'toolbar',
overflowHandler: 'scroller',
items: [{
xtype: 'querysearchfield'
}, {
xtype: 'totalpropertystatus'
}, this.localize('context'), {
xtype: 'slider',
minValue: 5,
value: 5,
maxValue: 50,
increment: 5,
width: 50,
listeners: {
render: function(slider) {
slider.setValue(me.getApiParam('context'));
},
changecomplete: function(slider, newValue) {
me.setApiParam("context", slider.getValue());
me.getStore().clearAndLoad({params: me.getApiParams()});
}
}
}, this.localize('expand'), {
xtype: 'slider',
minValue: 5,
value: 5,
maxValue: 500,
increment: 10,
width: 50,
listeners: {
render: function(slider) {
slider.setValue(me.getApiParam('expand'));
},
changecomplete: function(slider, newValue) {
me.setApiParam('expand', newValue);
var view = me.getView();
var recordsExpanded = me.plugins[0].recordsExpanded;
var store = view.getStore();
for (var id in recordsExpanded) {
var record = store.getByInternalId(id);
var row = view.getRow(record);
var expandRow = row.parentNode.childNodes[1];
if (recordsExpanded[id]) {
view.fireEvent("expandbody", row, record, expandRow, {force: true});
} else {
Ext.fly(expandRow).down('.x-grid-rowbody').setHtml('');
}
}
}
}
},{
xtype: 'corpusdocumentselector'
}]
}],
columns: [{
text: this.localize("document"),
toolTip: this.localize("documentTip"),
width: 'autoSize',
dataIndex: 'docIndex',
sortable: true,
renderer: function (value, metaData, record, rowIndex, colIndex, store) {
return store.getCorpus().getDocument(value).getTinyLabel();
}
},{
text: this.localize("left"),
tooltip: this.localize("leftTip"),
align: 'right',
dataIndex: 'left',
sortable: true,
flex: 1
},{
text: this.localize("term"),
tooltip: this.localize("termTip"),
dataIndex: 'term',
sortable: true,
width: 'autoSize'
},{
text: this.localize("right"),
tooltip: this.localize("rightTip"),
dataIndex: 'right',
sortable: true,
flex: 1
},{
text: this.localize("position"),
tooltip: this.localize("positionTip"),
dataIndex: 'position',
sortable: true,
hidden: true,
flex: 1
}],
listeners: {
scope: this,
corpusSelected: function() {
if (this.getStore().getCorpus()) {
this.setApiParams({docId: undefined, docIndex: undefined})
this.getStore().clearAndLoad()
}
},
documentsSelected: function(src, docs) {
var docIds = [];
var corpus = this.getStore().getCorpus();
docs.forEach(function(doc) {
docIds.push(corpus.getDocument(doc).getId())
}, this);
this.setApiParams({docId: docIds, docIndex: undefined})
this.getStore().clearAndLoad()
},
documentSegmentTermClicked: {
fn: function(src, documentSegmentTerm) {
if (!documentSegmentTerm.term) {return;}
params = {query: documentSegmentTerm.term};
if (documentSegmentTerm.docId) {
params.docId = documentSegmentTerm.docId;
}
else {
// default to first document
params.docIndex = documentSegmentTerm.docIndex ? documentSegmentTerm.docIndex : 0;
}
this.setApiParams(params);
if (this.isVisible()) {
this.getStore().clearAndLoad()
}
},
scope: this
},
documentIndexTermsClicked: {
fn: function(src, documentIndexTerms) {
// this isn't quite right, since we want every term associated with a docIndex, but for now it will do
var queriesHash = {};
var queries = [];
var docIndexHash = {};
var docIndex = [];
documentIndexTerms.forEach(function(item) {
if (!queriesHash[item.term]) {
queries.push(item.term);
queriesHash[item.term]=true;
}
if (!docIndexHash[item.docIndex]) {
docIndex.push(item.docIndex);
docIndexHash[item.docIndex]=true;
}
});
this.setApiParams({
docId: undefined,
docIndex: docIndex,
query: queries
});
if (this.isVisible()) {
this.getStore().clearAndLoad({params: this.getApiParams()});
}
},
scope: this
},
afterrender: function(me) {
me.getView().on('expandbody', function( rowNode, record, expandRow, eOpts ) {
if (expandRow.textContent==="" || (eOpts && eOpts.force)) {
var store = Ext.create("Voyant.data.store.Contexts", {
stripTags: "all",
corpus: me.getStore().getCorpus()
});
var data = record.getData();
store.load({
params: {
query: data.query,
docIndex: data.docIndex,
position: data.position,
limit: 1,
context: me.getApiParam('expand')
},
callback: function(records, operation, success) {
if (success && records.length==1) {
data = records[0].getData();
Ext.fly(operation.expandRow).down('.x-grid-rowbody').setHtml(data.left + " <span class='word keyword'>" + data.middle + "</span> " + data.right);
}
},
expandRow: expandRow
});
}
});
}
}
});
me.on("loadedCorpus", function(src, corpus) {
if (this.hasCorpusAccess(corpus)==false) {
this.mask(this.localize('limitedAccess'), 'mask-no-spinner');
}
else {
var corpusTerms = corpus.getCorpusTerms({autoLoad: false});
corpusTerms.load({
callback: function(records, operation, success) {
if (success && records.length>0) {
this.setApiParam("query", [records[0].getTerm()]);
this.getStore().clearAndLoad({params: this.getApiParams()});
}
},
scope: me,
params: {
limit: 1,
query: this.getApiParam("query"),
stopList: this.getApiParam("stopList"),
forTool: 'contexts'
}
});
}
});
me.on("query", function(src, query) {
this.setApiParam('query', query);
this.getStore().clearAndLoad({params: this.getApiParams()});
}, me);
me.on("documentTermsClicked", function(src, documentTerms) {
var documentIndexTerms = [];
documentTerms.forEach(function(documentTerm) {
documentIndexTerms.push({
term: documentTerm.getTerm(),
docIndex: documentTerm.getDocIndex()
});
});
this.fireEvent("documentIndexTermsClicked", this, documentIndexTerms);
});
me.on("termsClicked", function(src, terms) {
var documentIndexTerms = [];
if (Ext.isString(terms)) {terms = [terms];}
terms.forEach(function(term) {
if (term.docIndex !== undefined) {
documentIndexTerms.push({
term: term.term,
docIndex: term.docIndex
});
}
});
if (documentIndexTerms.length > 0) {
this.fireEvent("documentIndexTermsClicked", this, documentIndexTerms);
}
});
me.callParent(arguments);
}
});

253
src/Voyant-master/src/main/webapp/app/panel/CorpusCollocates.js
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Ext.define('Voyant.panel.CorpusCollocates', {
extend: 'Ext.grid.Panel',
mixins: ['Voyant.panel.Panel'],
alias: 'widget.corpuscollocates',
statics: {
i18n: {
},
api: {
stopList: 'auto',
context: 5,
query: undefined,
docId: undefined,
docIndex: undefined,
sort: 'contextTermRawFreq'
},
glyph: 'xf0ce@FontAwesome'
},
config: {
options: [{xtype: 'stoplistoption'},{xtype: 'categoriesoption'}]
},
constructor: function(config) {
this.callParent(arguments);
this.mixins['Voyant.panel.Panel'].constructor.apply(this, arguments);
// create a listener for corpus loading (defined here, in case we need to load it next)
this.on('loadedCorpus', function(src, corpus) {
if (this.isVisible()) {
this.loadFromApis();
}
});
if (config.embedded) {
// var cls = Ext.getClass(config.embedded).getName();
// if (cls=="Voyant.data.store.DocumentTerms" || cls=="Voyant.data.model.Document") {
// this.fireEvent('loadedCorpus', this, config.embedded.getCorpus())
// }
}
else if (config.corpus) {
this.fireEvent('loadedCorpus', this, config.corpus)
}
this.on("corpusTermsClicked", function(src, terms) {
if (this.getStore().getCorpus()) { // make sure we have a corpus
var query = [];
terms.forEach(function(term) {
query.push(term.get("term"));
})
this.setApiParams({
query: query,
docId: undefined,
docIndex: undefined
});
if (this.isVisible()) {
this.loadFromApis();
}
}
});
this.on("documentsClicked", function(src, documents) {
var docIds = [];
documents.forEach(function(doc) {docIds.push(doc.get('id'))});
this.setApiParams({
docId: docIds,
docid: undefined,
query: undefined
})
if (this.isVisible()) {
this.loadFromApis();
}
});
this.on("activate", function() { // load after tab activate (if we're in a tab panel)
if (this.getStore().getCorpus()) {this.loadFromApis()}
}, this)
this.on("query", function(src, query) {
this.setApiParam("query", query);
this.getStore().getProxy().setExtraParam("query", query);
this.loadFromApis();
}, this)
},
loadFromApis: function() {
if (this.getStore().getCorpus()) {
if (this.getApiParam('query')) {
this.getStore().clearAndLoad({params: this.getApiParams()});
}
else {
var corpusTerms = this.getStore().getCorpus().getCorpusTerms({
leadingBufferZone: 0,
autoLoad: false
});
corpusTerms.load({
callback: function(records, operation, success) {
if (success) {
var terms = [];
records.forEach(function(term) {
terms.push(term.getTerm());
})
this.getStore().getProxy().setExtraParam("query", terms);
this.setApiParam('query', terms);
this.loadFromApis();
}
},
scope: this,
params: {
limit: 10,
stopList: this.getApiParam("stopList")
}
});
}
}
},
initComponent: function() {
var me = this;
var store = Ext.create("Voyant.data.store.CorpusCollocatesBuffered", {parentPanel: this});
Ext.apply(me, {
title: this.localize('title'),
emptyText: this.localize("emptyText"),
store : store,
selModel: Ext.create('Ext.selection.CheckboxModel', {
listeners: {
selectionchange: {
fn: function(sm, selections) {
var terms = [];
var context = this.getApiParam("context")
selections.forEach(function(selection) {
terms.push('"'+selection.getKeyword()+" "+selection.getContextTerm()+'"~'+context)
})
this.getApplication().dispatchEvent('termsClicked', this, terms);
},
scope: this
}
}
}),
dockedItems: [{
dock: 'bottom',
xtype: 'toolbar',
overflowHandler: 'scroller',
items: [{
xtype: 'querysearchfield'
}, {
xtype: 'totalpropertystatus'
}, this.localize('context'), {
xtype: 'slider',
minValue: 1,
value: 5,
maxValue: 30,
increment: 2,
width: 50,
listeners: {
render: function(slider) {
slider.setValue(me.getApiParam('context'))
},
changecomplete: function(slider, newValue) {
me.setApiParam("context", slider.getValue());
me.loadFromApis();
}
}
},{
xtype: 'corpusdocumentselector'
}]
}],
columns: [{
text: this.localize("term"),
dataIndex: 'term',
tooltip: this.localize("termTip"),
sortable: true,
flex: 1
},{
text: this.localize("rawFreq"),
dataIndex: 'rawFreq',
tooltip: this.localize("termRawFreqTip"),
sortable: true,
width: 'autoSize',
hidden: true
},{
text: this.localize("contextTerm"),
dataIndex: 'contextTerm',
tooltip: this.localize("contextTermTip"),
flex: 1,
sortable: true
},{
text: this.localize("contextTermRawFreq"),
tooltip: this.localize("contextTermRawFreqTip"),
dataIndex: 'contextTermRawFreq',
width: 'autoSize',
sortable: true
}/*,{
xtype: 'widgetcolumn',
text: this.localize("trend"),
tooltip: this.localize('trendTip'),
width: 120,
dataIndex: 'distributions',
widget: {
xtype: 'sparklineline'
}
}*/],
listeners: {
scope: this,
termsClicked: function(src, terms) {
if (this.getStore().getCorpus()) { // make sure we have a corpus
var queryTerms = [];
terms.forEach(function(term) {
if (Ext.isString(term)) {queryTerms.push(term);}
else if (term.term) {queryTerms.push(term.term);}
else if (term.getTerm) {queryTerms.push(term.getTerm());}
});
if (queryTerms.length > 0) {
this.setApiParams({
docIndex: undefined,
docId: undefined,
query: queryTerms
});
if (this.isVisible()) {
this.loadFromApis();
}
}
}
},
corpusSelected: function() {
if (this.getStore().getCorpus()) {
this.setApiParams({docId: undefined, docIndex: undefined})
this.loadFromApis();
}
},
documentsSelected: function(src, docs) {
var docIds = [];
var corpus = this.getStore().getCorpus();
docs.forEach(function(doc) {
docIds.push(corpus.getDocument(doc).getId())
}, this);
this.setApiParams({docId: docIds, docIndex: undefined});
this.loadFromApis();
}
}
});
me.callParent(arguments);
me.getStore().getProxy().setExtraParam("withDistributions", true);
}
})

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